co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G48610

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
2	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
3	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
4	GO:0005982: starch metabolic process	2.32E-05
5	GO:0046467: membrane lipid biosynthetic process	3.64E-05
6	GO:0071277: cellular response to calcium ion	3.64E-05
7	GO:1902358: sulfate transmembrane transport	2.33E-04
8	GO:0009152: purine ribonucleotide biosynthetic process	2.33E-04
9	GO:0046653: tetrahydrofolate metabolic process	2.33E-04
10	GO:0009765: photosynthesis, light harvesting	3.14E-04
11	GO:0015995: chlorophyll biosynthetic process	3.63E-04
12	GO:0010190: cytochrome b6f complex assembly	4.92E-04
13	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.92E-04
14	GO:0009228: thiamine biosynthetic process	4.92E-04
15	GO:0015979: photosynthesis	5.34E-04
16	GO:0010114: response to red light	6.47E-04
17	GO:0009645: response to low light intensity stimulus	6.87E-04
18	GO:0008272: sulfate transport	6.87E-04
19	GO:0009769: photosynthesis, light harvesting in photosystem II	6.87E-04
20	GO:0009704: de-etiolation	7.90E-04
21	GO:0016559: peroxisome fission	7.90E-04
22	GO:0019827: stem cell population maintenance	7.90E-04
23	GO:0009657: plastid organization	8.97E-04
24	GO:0090333: regulation of stomatal closure	1.01E-03
25	GO:0006783: heme biosynthetic process	1.01E-03
26	GO:0006779: porphyrin-containing compound biosynthetic process	1.12E-03
27	GO:0005975: carbohydrate metabolic process	1.15E-03
28	GO:0009641: shade avoidance	1.24E-03
29	GO:0006782: protoporphyrinogen IX biosynthetic process	1.24E-03
30	GO:0009773: photosynthetic electron transport in photosystem I	1.36E-03
31	GO:0030048: actin filament-based movement	1.62E-03
32	GO:0010223: secondary shoot formation	1.76E-03
33	GO:0010143: cutin biosynthetic process	1.76E-03
34	GO:0010020: chloroplast fission	1.76E-03
35	GO:0010025: wax biosynthetic process	2.04E-03
36	GO:0006636: unsaturated fatty acid biosynthetic process	2.04E-03
37	GO:0009768: photosynthesis, light harvesting in photosystem I	2.33E-03
38	GO:0016114: terpenoid biosynthetic process	2.48E-03
39	GO:0016998: cell wall macromolecule catabolic process	2.48E-03
40	GO:0009269: response to desiccation	2.48E-03
41	GO:0030433: ubiquitin-dependent ERAD pathway	2.64E-03
42	GO:0019252: starch biosynthetic process	3.82E-03
43	GO:0080167: response to karrikin	3.87E-03
44	GO:1901657: glycosyl compound metabolic process	4.37E-03
45	GO:0010411: xyloglucan metabolic process	5.76E-03
46	GO:0018298: protein-chromophore linkage	6.18E-03
47	GO:0000160: phosphorelay signal transduction system	6.39E-03
48	GO:0010311: lateral root formation	6.39E-03
49	GO:0010218: response to far red light	6.61E-03
50	GO:0009637: response to blue light	7.28E-03
51	GO:0009853: photorespiration	7.28E-03
52	GO:0034599: cellular response to oxidative stress	7.51E-03
53	GO:0006631: fatty acid metabolic process	8.21E-03
54	GO:0042546: cell wall biogenesis	8.93E-03
55	GO:0000209: protein polyubiquitination	8.93E-03
56	GO:0009644: response to high light intensity	9.17E-03
57	GO:0009416: response to light stimulus	1.01E-02
58	GO:0009736: cytokinin-activated signaling pathway	1.07E-02
59	GO:0006364: rRNA processing	1.07E-02
60	GO:0006417: regulation of translation	1.15E-02
61	GO:0006396: RNA processing	1.40E-02
62	GO:0009058: biosynthetic process	1.67E-02
63	GO:0006633: fatty acid biosynthetic process	1.89E-02
64	GO:0007623: circadian rhythm	2.02E-02
65	GO:0042254: ribosome biogenesis	2.80E-02
66	GO:0010200: response to chitin	3.30E-02
67	GO:0055114: oxidation-reduction process	3.79E-02
68	GO:0006869: lipid transport	3.91E-02
69	GO:0032259: methylation	4.12E-02
70	GO:0016042: lipid catabolic process	4.16E-02
71	GO:0006397: mRNA processing	4.38E-02

Rank	GO Term	Adjusted P value
1	GO:0080082: esculin beta-glucosidase activity	0.00E+00
2	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
3	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
4	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
5	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
6	GO:0004567: beta-mannosidase activity	0.00E+00
7	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
8	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	3.64E-05
9	GO:0030794: (S)-coclaurine-N-methyltransferase activity	3.64E-05
10	GO:0080079: cellobiose glucosidase activity	3.64E-05
11	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	3.64E-05
12	GO:0031957: very long-chain fatty acid-CoA ligase activity	3.64E-05
13	GO:0004565: beta-galactosidase activity	4.65E-05
14	GO:0008883: glutamyl-tRNA reductase activity	9.09E-05
15	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	9.09E-05
16	GO:0033201: alpha-1,4-glucan synthase activity	9.09E-05
17	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.58E-04
18	GO:0008864: formyltetrahydrofolate deformylase activity	1.58E-04
19	GO:0004373: glycogen (starch) synthase activity	1.58E-04
20	GO:0009011: starch synthase activity	3.14E-04
21	GO:2001070: starch binding	4.92E-04
22	GO:0102391: decanoate--CoA ligase activity	5.88E-04
23	GO:0004467: long-chain fatty acid-CoA ligase activity	6.87E-04
24	GO:0008271: secondary active sulfate transmembrane transporter activity	8.97E-04
25	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	1.12E-03
26	GO:0015116: sulfate transmembrane transporter activity	1.49E-03
27	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.76E-03
28	GO:0003774: motor activity	1.76E-03
29	GO:0031409: pigment binding	2.04E-03
30	GO:0042802: identical protein binding	2.58E-03
31	GO:0003727: single-stranded RNA binding	2.96E-03
32	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.00E-03
33	GO:0000156: phosphorelay response regulator activity	4.37E-03
34	GO:0016491: oxidoreductase activity	5.14E-03
35	GO:0016168: chlorophyll binding	5.35E-03
36	GO:0016798: hydrolase activity, acting on glycosyl bonds	5.76E-03
37	GO:0102483: scopolin beta-glucosidase activity	5.76E-03
38	GO:0008422: beta-glucosidase activity	7.74E-03
39	GO:0050661: NADP binding	7.97E-03
40	GO:0043621: protein self-association	9.17E-03
41	GO:0015293: symporter activity	9.42E-03
42	GO:0031625: ubiquitin protein ligase binding	1.15E-02
43	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.34E-02
44	GO:0008017: microtubule binding	2.09E-02
45	GO:0008168: methyltransferase activity	2.69E-02
46	GO:0016788: hydrolase activity, acting on ester bonds	2.80E-02
47	GO:0061630: ubiquitin protein ligase activity	3.34E-02
48	GO:0052689: carboxylic ester hydrolase activity	3.46E-02
49	GO:0003924: GTPase activity	4.25E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	8.18E-06
2	GO:0043036: starch grain	9.09E-05
3	GO:0009579: thylakoid	2.72E-04
4	GO:0009517: PSII associated light-harvesting complex II	3.14E-04
5	GO:0031969: chloroplast membrane	4.52E-04
6	GO:0009501: amyloplast	7.90E-04
7	GO:0016459: myosin complex	1.24E-03
8	GO:0009534: chloroplast thylakoid	1.89E-03
9	GO:0030076: light-harvesting complex	1.89E-03
10	GO:0043234: protein complex	2.04E-03
11	GO:0009535: chloroplast thylakoid membrane	2.07E-03
12	GO:0009654: photosystem II oxygen evolving complex	2.33E-03
13	GO:0009522: photosystem I	3.64E-03
14	GO:0009523: photosystem II	3.82E-03
15	GO:0019898: extrinsic component of membrane	3.82E-03
16	GO:0005618: cell wall	4.92E-03
17	GO:0009707: chloroplast outer membrane	6.18E-03
18	GO:0009941: chloroplast envelope	6.37E-03
19	GO:0031977: thylakoid lumen	8.21E-03
20	GO:0009570: chloroplast stroma	1.06E-02
21	GO:0010287: plastoglobule	1.55E-02
22	GO:0009543: chloroplast thylakoid lumen	1.61E-02
23	GO:0048046: apoplast	1.86E-02
24	GO:0005576: extracellular region	2.44E-02
25	GO:0009505: plant-type cell wall	2.57E-02