co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G48290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
3	GO:0009733: response to auxin	1.49E-04
4	GO:0040008: regulation of growth	2.22E-04
5	GO:0046620: regulation of organ growth	2.87E-04
6	GO:0006285: base-excision repair, AP site formation	2.89E-04
7	GO:0010726: positive regulation of hydrogen peroxide metabolic process	2.89E-04
8	GO:0046520: sphingoid biosynthetic process	2.89E-04
9	GO:0006741: NADP biosynthetic process	6.34E-04
10	GO:0031648: protein destabilization	6.34E-04
11	GO:0071398: cellular response to fatty acid	1.03E-03
12	GO:0048575: short-day photoperiodism, flowering	1.03E-03
13	GO:0019674: NAD metabolic process	1.03E-03
14	GO:0090506: axillary shoot meristem initiation	1.03E-03
15	GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion	1.03E-03
16	GO:0010321: regulation of vegetative phase change	1.47E-03
17	GO:0019363: pyridine nucleotide biosynthetic process	1.47E-03
18	GO:0010371: regulation of gibberellin biosynthetic process	1.47E-03
19	GO:0042546: cell wall biogenesis	1.59E-03
20	GO:0009686: gibberellin biosynthetic process	1.95E-03
21	GO:0009755: hormone-mediated signaling pathway	1.97E-03
22	GO:0016131: brassinosteroid metabolic process	2.52E-03
23	GO:0048497: maintenance of floral organ identity	2.52E-03
24	GO:0010438: cellular response to sulfur starvation	2.52E-03
25	GO:0045487: gibberellin catabolic process	2.52E-03
26	GO:0009741: response to brassinosteroid	2.67E-03
27	GO:0010268: brassinosteroid homeostasis	2.67E-03
28	GO:0009734: auxin-activated signaling pathway	2.89E-03
29	GO:0009913: epidermal cell differentiation	3.11E-03
30	GO:1902456: regulation of stomatal opening	3.11E-03
31	GO:0003006: developmental process involved in reproduction	3.11E-03
32	GO:0010942: positive regulation of cell death	3.11E-03
33	GO:0010358: leaf shaping	3.11E-03
34	GO:0071554: cell wall organization or biogenesis	3.30E-03
35	GO:0032502: developmental process	3.52E-03
36	GO:0031930: mitochondria-nucleus signaling pathway	3.74E-03
37	GO:0045892: negative regulation of transcription, DNA-templated	4.88E-03
38	GO:0006402: mRNA catabolic process	5.12E-03
39	GO:0010439: regulation of glucosinolate biosynthetic process	5.12E-03
40	GO:0009690: cytokinin metabolic process	5.12E-03
41	GO:0009704: de-etiolation	5.12E-03
42	GO:2000070: regulation of response to water deprivation	5.12E-03
43	GO:0009819: drought recovery	5.12E-03
44	GO:0042255: ribosome assembly	5.12E-03
45	GO:0006353: DNA-templated transcription, termination	5.12E-03
46	GO:0010411: xyloglucan metabolic process	5.61E-03
47	GO:0048573: photoperiodism, flowering	5.61E-03
48	GO:0007186: G-protein coupled receptor signaling pathway	5.87E-03
49	GO:0051865: protein autoubiquitination	6.65E-03
50	GO:0000373: Group II intron splicing	6.65E-03
51	GO:0009056: catabolic process	6.65E-03
52	GO:0048507: meristem development	6.65E-03
53	GO:0009867: jasmonic acid mediated signaling pathway	7.88E-03
54	GO:0009739: response to gibberellin	7.99E-03
55	GO:0009870: defense response signaling pathway, resistance gene-dependent	8.33E-03
56	GO:0009641: shade avoidance	8.33E-03
57	GO:0009682: induced systemic resistance	9.22E-03
58	GO:0006631: fatty acid metabolic process	9.37E-03
59	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.01E-02
60	GO:0010582: floral meristem determinacy	1.01E-02
61	GO:0009926: auxin polar transport	1.02E-02
62	GO:2000028: regulation of photoperiodism, flowering	1.11E-02
63	GO:0009767: photosynthetic electron transport chain	1.11E-02
64	GO:0010588: cotyledon vascular tissue pattern formation	1.11E-02
65	GO:0010102: lateral root morphogenesis	1.11E-02
66	GO:0006351: transcription, DNA-templated	1.20E-02
67	GO:0010207: photosystem II assembly	1.21E-02
68	GO:0010223: secondary shoot formation	1.21E-02
69	GO:0009887: animal organ morphogenesis	1.21E-02
70	GO:0006302: double-strand break repair	1.21E-02
71	GO:0048467: gynoecium development	1.21E-02
72	GO:0090351: seedling development	1.31E-02
73	GO:0006863: purine nucleobase transport	1.41E-02
74	GO:0048366: leaf development	1.49E-02
75	GO:0005992: trehalose biosynthetic process	1.52E-02
76	GO:0009416: response to light stimulus	1.56E-02
77	GO:0016567: protein ubiquitination	1.57E-02
78	GO:0048367: shoot system development	1.68E-02
79	GO:0051321: meiotic cell cycle	1.75E-02
80	GO:0016114: terpenoid biosynthetic process	1.75E-02
81	GO:0010431: seed maturation	1.75E-02
82	GO:0006306: DNA methylation	1.75E-02
83	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.86E-02
84	GO:0010082: regulation of root meristem growth	1.98E-02
85	GO:0001944: vasculature development	1.98E-02
86	GO:0009625: response to insect	1.98E-02
87	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.98E-02
88	GO:0009693: ethylene biosynthetic process	1.98E-02
89	GO:0071215: cellular response to abscisic acid stimulus	1.98E-02
90	GO:0045492: xylan biosynthetic process	2.10E-02
91	GO:0006284: base-excision repair	2.10E-02
92	GO:0080022: primary root development	2.35E-02
93	GO:0010087: phloem or xylem histogenesis	2.35E-02
94	GO:0010118: stomatal movement	2.35E-02
95	GO:0010182: sugar mediated signaling pathway	2.48E-02
96	GO:0009960: endosperm development	2.48E-02
97	GO:0010305: leaf vascular tissue pattern formation	2.48E-02
98	GO:0048825: cotyledon development	2.75E-02
99	GO:0009753: response to jasmonic acid	2.83E-02
100	GO:0016132: brassinosteroid biosynthetic process	2.88E-02
101	GO:0002229: defense response to oomycetes	2.88E-02
102	GO:0010583: response to cyclopentenone	3.02E-02
103	GO:0019761: glucosinolate biosynthetic process	3.02E-02
104	GO:1901657: glycosyl compound metabolic process	3.16E-02
105	GO:0016125: sterol metabolic process	3.31E-02
106	GO:0051607: defense response to virus	3.60E-02
107	GO:0010027: thylakoid membrane organization	3.75E-02
108	GO:0007166: cell surface receptor signaling pathway	3.87E-02
109	GO:0009908: flower development	4.65E-02
110	GO:0000160: phosphorelay signal transduction system	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0008395: steroid hydroxylase activity	2.89E-04
3	GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	2.89E-04
4	GO:0042736: NADH kinase activity	2.89E-04
5	GO:0010012: steroid 22-alpha hydroxylase activity	2.89E-04
6	GO:0000170: sphingosine hydroxylase activity	2.89E-04
7	GO:0050139: nicotinate-N-glucosyltransferase activity	2.89E-04
8	GO:0045543: gibberellin 2-beta-dioxygenase activity	6.34E-04
9	GO:0010296: prenylcysteine methylesterase activity	6.34E-04
10	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	6.34E-04
11	GO:0042284: sphingolipid delta-4 desaturase activity	6.34E-04
12	GO:0003906: DNA-(apurinic or apyrimidinic site) lyase activity	1.03E-03
13	GO:0045544: gibberellin 20-oxidase activity	1.47E-03
14	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.47E-03
15	GO:0005345: purine nucleobase transmembrane transporter activity	1.49E-03
16	GO:0019104: DNA N-glycosylase activity	1.97E-03
17	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.52E-03
18	GO:0080030: methyl indole-3-acetate esterase activity	3.11E-03
19	GO:0004709: MAP kinase kinase kinase activity	3.11E-03
20	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.30E-03
21	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.74E-03
22	GO:0016832: aldehyde-lyase activity	3.74E-03
23	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	3.74E-03
24	GO:0016413: O-acetyltransferase activity	4.50E-03
25	GO:0004871: signal transducer activity	5.12E-03
26	GO:0016798: hydrolase activity, acting on glycosyl bonds	5.61E-03
27	GO:0003951: NAD+ kinase activity	5.87E-03
28	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	6.65E-03
29	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	7.19E-03
30	GO:0004805: trehalose-phosphatase activity	8.33E-03
31	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.09E-02
32	GO:0043621: protein self-association	1.10E-02
33	GO:0003677: DNA binding	1.11E-02
34	GO:0003712: transcription cofactor activity	1.31E-02
35	GO:0031418: L-ascorbic acid binding	1.52E-02
36	GO:0033612: receptor serine/threonine kinase binding	1.75E-02
37	GO:0003964: RNA-directed DNA polymerase activity	1.75E-02
38	GO:0008408: 3'-5' exonuclease activity	1.75E-02
39	GO:0010333: terpene synthase activity	1.75E-02
40	GO:0016874: ligase activity	1.85E-02
41	GO:0003727: single-stranded RNA binding	2.10E-02
42	GO:0005199: structural constituent of cell wall	2.48E-02
43	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.48E-02
44	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.53E-02
45	GO:0004842: ubiquitin-protein transferase activity	2.56E-02
46	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.80E-02
47	GO:0009055: electron carrier activity	2.83E-02
48	GO:0004518: nuclease activity	3.02E-02
49	GO:0000156: phosphorelay response regulator activity	3.16E-02
50	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.16E-02
51	GO:0016759: cellulose synthase activity	3.31E-02
52	GO:0051213: dioxygenase activity	3.75E-02
53	GO:0102483: scopolin beta-glucosidase activity	4.21E-02
54	GO:0008236: serine-type peptidase activity	4.37E-02

Rank	GO Term	Adjusted P value
1	GO:0000791: euchromatin	2.89E-04
2	GO:0030870: Mre11 complex	6.34E-04
3	GO:0009654: photosystem II oxygen evolving complex	1.49E-03
4	GO:0009544: chloroplast ATP synthase complex	1.97E-03
5	GO:0000795: synaptonemal complex	2.52E-03
6	GO:0019898: extrinsic component of membrane	3.08E-03
7	GO:0010494: cytoplasmic stress granule	6.65E-03
8	GO:0042644: chloroplast nucleoid	6.65E-03
9	GO:0030095: chloroplast photosystem II	1.21E-02
10	GO:0005634: nucleus	1.33E-02
11	GO:0005875: microtubule associated complex	1.41E-02
12	GO:0009532: plastid stroma	1.75E-02
13	GO:0009504: cell plate	2.75E-02
14	GO:0000785: chromatin	3.02E-02
15	GO:0030529: intracellular ribonucleoprotein complex	3.75E-02
16	GO:0000932: P-body	3.75E-02
17	GO:0000151: ubiquitin ligase complex	4.53E-02