co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G48200

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0098586: cellular response to virus	0.00E+00
2	GO:0010203: response to very low fluence red light stimulus	0.00E+00
3	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
4	GO:0090279: regulation of calcium ion import	0.00E+00
5	GO:0006114: glycerol biosynthetic process	0.00E+00
6	GO:0008298: intracellular mRNA localization	0.00E+00
7	GO:0071474: cellular hyperosmotic response	0.00E+00
8	GO:0009904: chloroplast accumulation movement	4.05E-05
9	GO:0045038: protein import into chloroplast thylakoid membrane	4.05E-05
10	GO:0010190: cytochrome b6f complex assembly	6.00E-05
11	GO:0009903: chloroplast avoidance movement	8.36E-05
12	GO:0009854: oxidative photosynthetic carbon pathway	8.36E-05
13	GO:0009645: response to low light intensity stimulus	1.11E-04
14	GO:0009658: chloroplast organization	1.54E-04
15	GO:0010362: negative regulation of anion channel activity by blue light	1.82E-04
16	GO:0015969: guanosine tetraphosphate metabolic process	1.82E-04
17	GO:0031426: polycistronic mRNA processing	1.82E-04
18	GO:0051775: response to redox state	1.82E-04
19	GO:0000012: single strand break repair	1.82E-04
20	GO:0000481: maturation of 5S rRNA	1.82E-04
21	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	1.82E-04
22	GO:0043087: regulation of GTPase activity	1.82E-04
23	GO:1902458: positive regulation of stomatal opening	1.82E-04
24	GO:0034337: RNA folding	1.82E-04
25	GO:0009638: phototropism	2.59E-04
26	GO:0018298: protein-chromophore linkage	3.52E-04
27	GO:0051262: protein tetramerization	4.10E-04
28	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.10E-04
29	GO:0046741: transport of virus in host, tissue to tissue	4.10E-04
30	GO:0000256: allantoin catabolic process	4.10E-04
31	GO:0010155: regulation of proton transport	4.10E-04
32	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.10E-04
33	GO:0009767: photosynthetic electron transport chain	4.63E-04
34	GO:0000913: preprophase band assembly	6.69E-04
35	GO:0031022: nuclear migration along microfilament	6.69E-04
36	GO:0010136: ureide catabolic process	6.69E-04
37	GO:0017006: protein-tetrapyrrole linkage	6.69E-04
38	GO:0005977: glycogen metabolic process	6.69E-04
39	GO:0006107: oxaloacetate metabolic process	9.55E-04
40	GO:0010239: chloroplast mRNA processing	9.55E-04
41	GO:0009584: detection of visible light	9.55E-04
42	GO:0006145: purine nucleobase catabolic process	9.55E-04
43	GO:0033014: tetrapyrrole biosynthetic process	9.55E-04
44	GO:0009226: nucleotide-sugar biosynthetic process	9.55E-04
45	GO:0043572: plastid fission	9.55E-04
46	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.55E-04
47	GO:0009306: protein secretion	1.11E-03
48	GO:0048442: sepal development	1.27E-03
49	GO:0051322: anaphase	1.27E-03
50	GO:0006661: phosphatidylinositol biosynthetic process	1.27E-03
51	GO:0071483: cellular response to blue light	1.27E-03
52	GO:0006734: NADH metabolic process	1.27E-03
53	GO:0010021: amylopectin biosynthetic process	1.27E-03
54	GO:0007018: microtubule-based movement	1.49E-03
55	GO:0080110: sporopollenin biosynthetic process	1.61E-03
56	GO:0019761: glucosinolate biosynthetic process	1.82E-03
57	GO:0032502: developmental process	1.82E-03
58	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.98E-03
59	GO:0050665: hydrogen peroxide biosynthetic process	1.98E-03
60	GO:0000910: cytokinesis	2.32E-03
61	GO:0009612: response to mechanical stimulus	2.38E-03
62	GO:0010076: maintenance of floral meristem identity	2.38E-03
63	GO:0017148: negative regulation of translation	2.38E-03
64	GO:0016126: sterol biosynthetic process	2.46E-03
65	GO:0009395: phospholipid catabolic process	2.80E-03
66	GO:0006400: tRNA modification	2.80E-03
67	GO:0010161: red light signaling pathway	2.80E-03
68	GO:0042255: ribosome assembly	3.24E-03
69	GO:0006353: DNA-templated transcription, termination	3.24E-03
70	GO:0009690: cytokinin metabolic process	3.24E-03
71	GO:0006605: protein targeting	3.24E-03
72	GO:0032508: DNA duplex unwinding	3.24E-03
73	GO:2000070: regulation of response to water deprivation	3.24E-03
74	GO:0009231: riboflavin biosynthetic process	3.24E-03
75	GO:0006811: ion transport	3.53E-03
76	GO:0071482: cellular response to light stimulus	3.71E-03
77	GO:0010204: defense response signaling pathway, resistance gene-independent	3.71E-03
78	GO:0046685: response to arsenic-containing substance	4.20E-03
79	GO:0009821: alkaloid biosynthetic process	4.20E-03
80	GO:0010206: photosystem II repair	4.20E-03
81	GO:0048507: meristem development	4.20E-03
82	GO:0034765: regulation of ion transmembrane transport	4.20E-03
83	GO:0006783: heme biosynthetic process	4.20E-03
84	GO:0006754: ATP biosynthetic process	4.20E-03
85	GO:0000373: Group II intron splicing	4.20E-03
86	GO:0006779: porphyrin-containing compound biosynthetic process	4.71E-03
87	GO:0009098: leucine biosynthetic process	4.71E-03
88	GO:0048441: petal development	5.24E-03
89	GO:0042546: cell wall biogenesis	5.42E-03
90	GO:0009644: response to high light intensity	5.63E-03
91	GO:0009684: indoleacetic acid biosynthetic process	5.79E-03
92	GO:0006352: DNA-templated transcription, initiation	5.79E-03
93	GO:0045037: protein import into chloroplast stroma	6.35E-03
94	GO:0009785: blue light signaling pathway	6.94E-03
95	GO:0006108: malate metabolic process	6.94E-03
96	GO:0055114: oxidation-reduction process	6.97E-03
97	GO:0009585: red, far-red light phototransduction	7.02E-03
98	GO:0006302: double-strand break repair	7.55E-03
99	GO:0048440: carpel development	7.55E-03
100	GO:0010020: chloroplast fission	7.55E-03
101	GO:0010207: photosystem II assembly	7.55E-03
102	GO:0090351: seedling development	8.18E-03
103	GO:0006833: water transport	8.82E-03
104	GO:0051302: regulation of cell division	1.02E-02
105	GO:0009768: photosynthesis, light harvesting in photosystem I	1.02E-02
106	GO:0031348: negative regulation of defense response	1.16E-02
107	GO:0009411: response to UV	1.23E-02
108	GO:0009625: response to insect	1.23E-02
109	GO:0010584: pollen exine formation	1.31E-02
110	GO:0048443: stamen development	1.31E-02
111	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.38E-02
112	GO:0042391: regulation of membrane potential	1.46E-02
113	GO:0008033: tRNA processing	1.46E-02
114	GO:0034220: ion transmembrane transport	1.46E-02
115	GO:0010268: brassinosteroid homeostasis	1.54E-02
116	GO:0045489: pectin biosynthetic process	1.54E-02
117	GO:0006662: glycerol ether metabolic process	1.54E-02
118	GO:0071555: cell wall organization	1.64E-02
119	GO:0009737: response to abscisic acid	1.70E-02
120	GO:0009791: post-embryonic development	1.70E-02
121	GO:0019252: starch biosynthetic process	1.70E-02
122	GO:0008654: phospholipid biosynthetic process	1.70E-02
123	GO:0000302: response to reactive oxygen species	1.79E-02
124	GO:0016132: brassinosteroid biosynthetic process	1.79E-02
125	GO:0010583: response to cyclopentenone	1.87E-02
126	GO:0016032: viral process	1.87E-02
127	GO:0009630: gravitropism	1.87E-02
128	GO:0016125: sterol metabolic process	2.05E-02
129	GO:0071805: potassium ion transmembrane transport	2.14E-02
130	GO:0010027: thylakoid membrane organization	2.32E-02
131	GO:0010411: xyloglucan metabolic process	2.61E-02
132	GO:0016311: dephosphorylation	2.71E-02
133	GO:0006970: response to osmotic stress	2.89E-02
134	GO:0000160: phosphorelay signal transduction system	2.91E-02
135	GO:0006810: transport	2.91E-02
136	GO:0010218: response to far red light	3.01E-02
137	GO:0005975: carbohydrate metabolic process	3.05E-02
138	GO:0010119: regulation of stomatal movement	3.11E-02
139	GO:0009853: photorespiration	3.32E-02
140	GO:0045087: innate immune response	3.32E-02
141	GO:0009637: response to blue light	3.32E-02
142	GO:0006099: tricarboxylic acid cycle	3.43E-02
143	GO:0034599: cellular response to oxidative stress	3.43E-02
144	GO:0046777: protein autophosphorylation	3.56E-02
145	GO:0015979: photosynthesis	3.80E-02
146	GO:0009640: photomorphogenesis	3.98E-02
147	GO:0000165: MAPK cascade	4.56E-02
148	GO:0042538: hyperosmotic salinity response	4.68E-02
149	GO:0006629: lipid metabolic process	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
2	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
3	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
4	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
5	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
6	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
7	GO:0050613: delta14-sterol reductase activity	0.00E+00
8	GO:0016491: oxidoreductase activity	2.63E-05
9	GO:0000293: ferric-chelate reductase activity	6.00E-05
10	GO:0042802: identical protein binding	1.02E-04
11	GO:0048038: quinone binding	1.47E-04
12	GO:0005227: calcium activated cation channel activity	1.82E-04
13	GO:0004451: isocitrate lyase activity	1.82E-04
14	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	1.82E-04
15	GO:0004325: ferrochelatase activity	1.82E-04
16	GO:0016618: hydroxypyruvate reductase activity	1.82E-04
17	GO:0008746: NAD(P)+ transhydrogenase activity	1.82E-04
18	GO:0004328: formamidase activity	1.82E-04
19	GO:0031516: far-red light photoreceptor activity	1.82E-04
20	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.10E-04
21	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	4.10E-04
22	GO:0048531: beta-1,3-galactosyltransferase activity	4.10E-04
23	GO:0019156: isoamylase activity	4.10E-04
24	GO:0008728: GTP diphosphokinase activity	4.10E-04
25	GO:0004103: choline kinase activity	4.10E-04
26	GO:0080045: quercetin 3'-O-glucosyltransferase activity	4.10E-04
27	GO:0009883: red or far-red light photoreceptor activity	4.10E-04
28	GO:0000155: phosphorelay sensor kinase activity	4.63E-04
29	GO:0004180: carboxypeptidase activity	6.69E-04
30	GO:0003861: 3-isopropylmalate dehydratase activity	6.69E-04
31	GO:0003935: GTP cyclohydrolase II activity	6.69E-04
32	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	6.69E-04
33	GO:0008020: G-protein coupled photoreceptor activity	6.69E-04
34	GO:0030267: glyoxylate reductase (NADP) activity	6.69E-04
35	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	9.55E-04
36	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	9.55E-04
37	GO:0048027: mRNA 5'-UTR binding	9.55E-04
38	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	9.55E-04
39	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	9.55E-04
40	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	9.55E-04
41	GO:0009882: blue light photoreceptor activity	9.55E-04
42	GO:0016836: hydro-lyase activity	1.27E-03
43	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.27E-03
44	GO:0016987: sigma factor activity	1.27E-03
45	GO:0004506: squalene monooxygenase activity	1.27E-03
46	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.27E-03
47	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.27E-03
48	GO:0008891: glycolate oxidase activity	1.27E-03
49	GO:0001053: plastid sigma factor activity	1.27E-03
50	GO:0010181: FMN binding	1.49E-03
51	GO:0008374: O-acyltransferase activity	1.61E-03
52	GO:0004040: amidase activity	1.61E-03
53	GO:0080046: quercetin 4'-O-glucosyltransferase activity	1.98E-03
54	GO:0004556: alpha-amylase activity	1.98E-03
55	GO:0016615: malate dehydrogenase activity	1.98E-03
56	GO:0030060: L-malate dehydrogenase activity	2.38E-03
57	GO:0005261: cation channel activity	2.38E-03
58	GO:0005242: inward rectifier potassium channel activity	2.38E-03
59	GO:0004672: protein kinase activity	2.64E-03
60	GO:0008236: serine-type peptidase activity	3.04E-03
61	GO:0008017: microtubule binding	3.14E-03
62	GO:0043022: ribosome binding	3.24E-03
63	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	4.20E-03
64	GO:0016887: ATPase activity	4.60E-03
65	GO:0016844: strictosidine synthase activity	4.71E-03
66	GO:0004673: protein histidine kinase activity	5.24E-03
67	GO:0003824: catalytic activity	5.40E-03
68	GO:0004565: beta-galactosidase activity	6.94E-03
69	GO:0008081: phosphoric diester hydrolase activity	6.94E-03
70	GO:0031072: heat shock protein binding	6.94E-03
71	GO:0003690: double-stranded DNA binding	7.26E-03
72	GO:0003777: microtubule motor activity	7.77E-03
73	GO:0031409: pigment binding	8.82E-03
74	GO:0004871: signal transducer activity	9.04E-03
75	GO:0003729: mRNA binding	9.18E-03
76	GO:0004176: ATP-dependent peptidase activity	1.09E-02
77	GO:0005525: GTP binding	1.20E-02
78	GO:0003727: single-stranded RNA binding	1.31E-02
79	GO:0047134: protein-disulfide reductase activity	1.38E-02
80	GO:0030551: cyclic nucleotide binding	1.46E-02
81	GO:0005249: voltage-gated potassium channel activity	1.46E-02
82	GO:0015144: carbohydrate transmembrane transporter activity	1.50E-02
83	GO:0008080: N-acetyltransferase activity	1.54E-02
84	GO:0004527: exonuclease activity	1.54E-02
85	GO:0004791: thioredoxin-disulfide reductase activity	1.62E-02
86	GO:0050662: coenzyme binding	1.62E-02
87	GO:0005351: sugar:proton symporter activity	1.69E-02
88	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.79E-02
89	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.96E-02
90	GO:0008237: metallopeptidase activity	2.14E-02
91	GO:0015250: water channel activity	2.32E-02
92	GO:0016168: chlorophyll binding	2.42E-02
93	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.61E-02
94	GO:0016788: hydrolase activity, acting on ester bonds	2.74E-02
95	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.81E-02
96	GO:0005096: GTPase activator activity	2.91E-02
97	GO:0004222: metalloendopeptidase activity	3.01E-02
98	GO:0003697: single-stranded DNA binding	3.32E-02
99	GO:0003993: acid phosphatase activity	3.43E-02
100	GO:0042803: protein homodimerization activity	4.17E-02
101	GO:0035091: phosphatidylinositol binding	4.21E-02
102	GO:0051287: NAD binding	4.56E-02
103	GO:0046872: metal ion binding	4.69E-02
104	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	2.43E-12
3	GO:0009535: chloroplast thylakoid membrane	1.02E-09
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.68E-06
5	GO:0009782: photosystem I antenna complex	1.82E-04
6	GO:0009941: chloroplast envelope	3.95E-04
7	GO:0080085: signal recognition particle, chloroplast targeting	4.10E-04
8	GO:0009574: preprophase band	4.63E-04
9	GO:0033281: TAT protein transport complex	6.69E-04
10	GO:0009570: chloroplast stroma	1.01E-03
11	GO:0005871: kinesin complex	1.20E-03
12	GO:0009898: cytoplasmic side of plasma membrane	1.27E-03
13	GO:0055035: plastid thylakoid membrane	1.61E-03
14	GO:0009543: chloroplast thylakoid lumen	1.97E-03
15	GO:0005623: cell	2.04E-03
16	GO:0009986: cell surface	2.80E-03
17	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.71E-03
18	GO:0042644: chloroplast nucleoid	4.20E-03
19	GO:0005773: vacuole	4.50E-03
20	GO:0016604: nuclear body	4.71E-03
21	GO:0031977: thylakoid lumen	4.80E-03
22	GO:0016021: integral component of membrane	5.51E-03
23	GO:0032040: small-subunit processome	6.35E-03
24	GO:0005874: microtubule	6.49E-03
25	GO:0009536: plastid	6.56E-03
26	GO:0009579: thylakoid	7.42E-03
27	GO:0030176: integral component of endoplasmic reticulum membrane	8.18E-03
28	GO:0030076: light-harvesting complex	8.18E-03
29	GO:0009654: photosystem II oxygen evolving complex	1.02E-02
30	GO:0042651: thylakoid membrane	1.02E-02
31	GO:0009524: phragmoplast	1.32E-02
32	GO:0009504: cell plate	1.70E-02
33	GO:0019898: extrinsic component of membrane	1.70E-02
34	GO:0005694: chromosome	1.87E-02
35	GO:0016020: membrane	1.97E-02
36	GO:0046658: anchored component of plasma membrane	2.30E-02
37	GO:0030529: intracellular ribonucleoprotein complex	2.32E-02
38	GO:0009707: chloroplast outer membrane	2.81E-02
39	GO:0009534: chloroplast thylakoid	2.91E-02
40	GO:0031969: chloroplast membrane	3.33E-02
41	GO:0005819: spindle	3.54E-02
42	GO:0005622: intracellular	4.68E-02