co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G48040

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
2	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
3	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
4	GO:0006573: valine metabolic process	0.00E+00
5	GO:0000372: Group I intron splicing	0.00E+00
6	GO:1905177: tracheary element differentiation	0.00E+00
7	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
8	GO:0070979: protein K11-linked ubiquitination	0.00E+00
9	GO:0000373: Group II intron splicing	5.78E-07
10	GO:0051382: kinetochore assembly	3.97E-04
11	GO:0009090: homoserine biosynthetic process	3.97E-04
12	GO:1902025: nitrate import	3.97E-04
13	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	3.97E-04
14	GO:0000012: single strand break repair	3.97E-04
15	GO:0043266: regulation of potassium ion transport	3.97E-04
16	GO:0010080: regulation of floral meristem growth	3.97E-04
17	GO:0006551: leucine metabolic process	3.97E-04
18	GO:2000021: regulation of ion homeostasis	3.97E-04
19	GO:0006436: tryptophanyl-tRNA aminoacylation	3.97E-04
20	GO:0070574: cadmium ion transmembrane transport	3.97E-04
21	GO:0090548: response to nitrate starvation	3.97E-04
22	GO:0000066: mitochondrial ornithine transport	3.97E-04
23	GO:0050801: ion homeostasis	3.97E-04
24	GO:0034757: negative regulation of iron ion transport	3.97E-04
25	GO:0032544: plastid translation	5.59E-04
26	GO:0006435: threonyl-tRNA aminoacylation	8.60E-04
27	GO:1900871: chloroplast mRNA modification	8.60E-04
28	GO:0010271: regulation of chlorophyll catabolic process	8.60E-04
29	GO:0006432: phenylalanyl-tRNA aminoacylation	8.60E-04
30	GO:0031297: replication fork processing	8.60E-04
31	GO:0010582: floral meristem determinacy	1.21E-03
32	GO:0031022: nuclear migration along microfilament	1.40E-03
33	GO:0080117: secondary growth	1.40E-03
34	GO:0010022: meristem determinacy	1.40E-03
35	GO:0031145: anaphase-promoting complex-dependent catabolic process	1.40E-03
36	GO:0010623: programmed cell death involved in cell development	1.40E-03
37	GO:0030029: actin filament-based process	1.40E-03
38	GO:0010447: response to acidic pH	1.40E-03
39	GO:0009800: cinnamic acid biosynthetic process	2.02E-03
40	GO:0042989: sequestering of actin monomers	2.02E-03
41	GO:0009067: aspartate family amino acid biosynthetic process	2.02E-03
42	GO:0051513: regulation of monopolar cell growth	2.02E-03
43	GO:0030071: regulation of mitotic metaphase/anaphase transition	2.02E-03
44	GO:0051639: actin filament network formation	2.02E-03
45	GO:0034059: response to anoxia	2.02E-03
46	GO:0010239: chloroplast mRNA processing	2.02E-03
47	GO:0005992: trehalose biosynthetic process	2.14E-03
48	GO:0010508: positive regulation of autophagy	2.71E-03
49	GO:0008295: spermidine biosynthetic process	2.71E-03
50	GO:0051764: actin crosslink formation	2.71E-03
51	GO:0048442: sepal development	2.71E-03
52	GO:0051322: anaphase	2.71E-03
53	GO:0009451: RNA modification	2.84E-03
54	GO:0032876: negative regulation of DNA endoreduplication	3.47E-03
55	GO:0009696: salicylic acid metabolic process	3.47E-03
56	GO:0080110: sporopollenin biosynthetic process	3.47E-03
57	GO:0016131: brassinosteroid metabolic process	3.47E-03
58	GO:0030041: actin filament polymerization	3.47E-03
59	GO:0009904: chloroplast accumulation movement	3.47E-03
60	GO:0031365: N-terminal protein amino acid modification	3.47E-03
61	GO:0016123: xanthophyll biosynthetic process	3.47E-03
62	GO:0010158: abaxial cell fate specification	3.47E-03
63	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.65E-03
64	GO:0009793: embryo development ending in seed dormancy	3.72E-03
65	GO:0010087: phloem or xylem histogenesis	3.95E-03
66	GO:0045489: pectin biosynthetic process	4.26E-03
67	GO:0046323: glucose import	4.26E-03
68	GO:0010268: brassinosteroid homeostasis	4.26E-03
69	GO:0006559: L-phenylalanine catabolic process	4.29E-03
70	GO:0048831: regulation of shoot system development	4.29E-03
71	GO:0010190: cytochrome b6f complex assembly	4.29E-03
72	GO:0055072: iron ion homeostasis	4.91E-03
73	GO:0042372: phylloquinone biosynthetic process	5.17E-03
74	GO:0010076: maintenance of floral meristem identity	5.17E-03
75	GO:0009082: branched-chain amino acid biosynthetic process	5.17E-03
76	GO:0048509: regulation of meristem development	5.17E-03
77	GO:0009099: valine biosynthetic process	5.17E-03
78	GO:0009903: chloroplast avoidance movement	5.17E-03
79	GO:0009088: threonine biosynthetic process	5.17E-03
80	GO:0009648: photoperiodism	5.17E-03
81	GO:2000067: regulation of root morphogenesis	5.17E-03
82	GO:0000302: response to reactive oxygen species	5.26E-03
83	GO:0010050: vegetative phase change	6.11E-03
84	GO:0010098: suspensor development	6.11E-03
85	GO:0051510: regulation of unidimensional cell growth	6.11E-03
86	GO:0000712: resolution of meiotic recombination intermediates	6.11E-03
87	GO:0070413: trehalose metabolism in response to stress	7.10E-03
88	GO:0006875: cellular metal ion homeostasis	7.10E-03
89	GO:0009850: auxin metabolic process	7.10E-03
90	GO:0032875: regulation of DNA endoreduplication	7.10E-03
91	GO:0048564: photosystem I assembly	7.10E-03
92	GO:0010029: regulation of seed germination	8.06E-03
93	GO:0009827: plant-type cell wall modification	8.15E-03
94	GO:0009657: plastid organization	8.15E-03
95	GO:0009097: isoleucine biosynthetic process	8.15E-03
96	GO:0007129: synapsis	8.15E-03
97	GO:0071482: cellular response to light stimulus	8.15E-03
98	GO:0010206: photosystem II repair	9.25E-03
99	GO:0009845: seed germination	9.25E-03
100	GO:0010018: far-red light signaling pathway	1.04E-02
101	GO:0009086: methionine biosynthetic process	1.04E-02
102	GO:0016571: histone methylation	1.04E-02
103	GO:0008202: steroid metabolic process	1.04E-02
104	GO:0016573: histone acetylation	1.04E-02
105	GO:0000160: phosphorelay signal transduction system	1.05E-02
106	GO:0048441: petal development	1.16E-02
107	GO:0006535: cysteine biosynthetic process from serine	1.16E-02
108	GO:0006259: DNA metabolic process	1.16E-02
109	GO:0006265: DNA topological change	1.29E-02
110	GO:0009089: lysine biosynthetic process via diaminopimelate	1.29E-02
111	GO:0006415: translational termination	1.29E-02
112	GO:0006631: fatty acid metabolic process	1.51E-02
113	GO:0008283: cell proliferation	1.64E-02
114	GO:0048440: carpel development	1.69E-02
115	GO:0006541: glutamine metabolic process	1.69E-02
116	GO:0010207: photosystem II assembly	1.69E-02
117	GO:0009266: response to temperature stimulus	1.69E-02
118	GO:0006302: double-strand break repair	1.69E-02
119	GO:0042546: cell wall biogenesis	1.70E-02
120	GO:0010039: response to iron ion	1.83E-02
121	GO:0090351: seedling development	1.83E-02
122	GO:0009636: response to toxic substance	1.84E-02
123	GO:0042753: positive regulation of circadian rhythm	1.98E-02
124	GO:0006863: purine nucleobase transport	1.98E-02
125	GO:0030150: protein import into mitochondrial matrix	2.13E-02
126	GO:0006338: chromatin remodeling	2.13E-02
127	GO:0007010: cytoskeleton organization	2.13E-02
128	GO:0051017: actin filament bundle assembly	2.13E-02
129	GO:0006289: nucleotide-excision repair	2.13E-02
130	GO:0019344: cysteine biosynthetic process	2.13E-02
131	GO:0009658: chloroplast organization	2.20E-02
132	GO:0006364: rRNA processing	2.21E-02
133	GO:0009736: cytokinin-activated signaling pathway	2.21E-02
134	GO:0006418: tRNA aminoacylation for protein translation	2.29E-02
135	GO:0006970: response to osmotic stress	2.41E-02
136	GO:0015992: proton transport	2.44E-02
137	GO:0010431: seed maturation	2.44E-02
138	GO:0055114: oxidation-reduction process	2.47E-02
139	GO:0016226: iron-sulfur cluster assembly	2.61E-02
140	GO:0035428: hexose transmembrane transport	2.61E-02
141	GO:0031348: negative regulation of defense response	2.61E-02
142	GO:0048316: seed development	2.70E-02
143	GO:0071215: cellular response to abscisic acid stimulus	2.77E-02
144	GO:0010584: pollen exine formation	2.94E-02
145	GO:0048443: stamen development	2.94E-02
146	GO:0019722: calcium-mediated signaling	2.94E-02
147	GO:0010089: xylem development	2.94E-02
148	GO:0070417: cellular response to cold	3.12E-02
149	GO:0016117: carotenoid biosynthetic process	3.12E-02
150	GO:0009958: positive gravitropism	3.48E-02
151	GO:0009741: response to brassinosteroid	3.48E-02
152	GO:0048544: recognition of pollen	3.66E-02
153	GO:0007018: microtubule-based movement	3.66E-02
154	GO:0007059: chromosome segregation	3.66E-02
155	GO:0016132: brassinosteroid biosynthetic process	4.04E-02
156	GO:0019761: glucosinolate biosynthetic process	4.23E-02
157	GO:0007264: small GTPase mediated signal transduction	4.23E-02
158	GO:0009639: response to red or far red light	4.63E-02
159	GO:0016125: sterol metabolic process	4.63E-02
160	GO:0006281: DNA repair	4.65E-02
161	GO:0007267: cell-cell signaling	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
2	GO:0050613: delta14-sterol reductase activity	0.00E+00
3	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
4	GO:0080042: ADP-glucose pyrophosphohydrolase activity	3.97E-04
5	GO:0005290: L-histidine transmembrane transporter activity	3.97E-04
6	GO:0003984: acetolactate synthase activity	3.97E-04
7	GO:0008395: steroid hydroxylase activity	3.97E-04
8	GO:0008242: omega peptidase activity	3.97E-04
9	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.97E-04
10	GO:0004830: tryptophan-tRNA ligase activity	3.97E-04
11	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	3.97E-04
12	GO:0043022: ribosome binding	4.58E-04
13	GO:0003690: double-stranded DNA binding	7.37E-04
14	GO:0008805: carbon-monoxide oxygenase activity	8.60E-04
15	GO:0000064: L-ornithine transmembrane transporter activity	8.60E-04
16	GO:0004826: phenylalanine-tRNA ligase activity	8.60E-04
17	GO:0004412: homoserine dehydrogenase activity	8.60E-04
18	GO:0050736: O-malonyltransferase activity	8.60E-04
19	GO:0009884: cytokinin receptor activity	8.60E-04
20	GO:0004829: threonine-tRNA ligase activity	8.60E-04
21	GO:0048531: beta-1,3-galactosyltransferase activity	8.60E-04
22	GO:0034722: gamma-glutamyl-peptidase activity	8.60E-04
23	GO:0050017: L-3-cyanoalanine synthase activity	8.60E-04
24	GO:0080041: ADP-ribose pyrophosphohydrolase activity	8.60E-04
25	GO:0004047: aminomethyltransferase activity	8.60E-04
26	GO:0004766: spermidine synthase activity	8.60E-04
27	GO:0004805: trehalose-phosphatase activity	9.20E-04
28	GO:0009982: pseudouridine synthase activity	1.37E-03
29	GO:0045548: phenylalanine ammonia-lyase activity	1.40E-03
30	GO:0004148: dihydrolipoyl dehydrogenase activity	1.40E-03
31	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.40E-03
32	GO:0005034: osmosensor activity	1.40E-03
33	GO:0003723: RNA binding	1.67E-03
34	GO:0005354: galactose transmembrane transporter activity	2.02E-03
35	GO:0015181: arginine transmembrane transporter activity	2.02E-03
36	GO:0009678: hydrogen-translocating pyrophosphatase activity	2.02E-03
37	GO:0015086: cadmium ion transmembrane transporter activity	2.02E-03
38	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	2.02E-03
39	GO:0016149: translation release factor activity, codon specific	2.02E-03
40	GO:0017172: cysteine dioxygenase activity	2.02E-03
41	GO:0080031: methyl salicylate esterase activity	2.02E-03
42	GO:0004300: enoyl-CoA hydratase activity	2.02E-03
43	GO:0015189: L-lysine transmembrane transporter activity	2.02E-03
44	GO:0004072: aspartate kinase activity	2.02E-03
45	GO:0052793: pectin acetylesterase activity	2.71E-03
46	GO:0070628: proteasome binding	2.71E-03
47	GO:0042277: peptide binding	2.71E-03
48	GO:0003785: actin monomer binding	3.47E-03
49	GO:0005471: ATP:ADP antiporter activity	3.47E-03
50	GO:0004130: cytochrome-c peroxidase activity	4.29E-03
51	GO:0031593: polyubiquitin binding	4.29E-03
52	GO:0016688: L-ascorbate peroxidase activity	4.29E-03
53	GO:0080030: methyl indole-3-acetate esterase activity	4.29E-03
54	GO:0005355: glucose transmembrane transporter activity	4.58E-03
55	GO:0004656: procollagen-proline 4-dioxygenase activity	5.17E-03
56	GO:0019900: kinase binding	5.17E-03
57	GO:0004124: cysteine synthase activity	5.17E-03
58	GO:0004518: nuclease activity	5.62E-03
59	GO:0004427: inorganic diphosphatase activity	6.11E-03
60	GO:0015103: inorganic anion transmembrane transporter activity	6.11E-03
61	GO:0008235: metalloexopeptidase activity	6.11E-03
62	GO:0016597: amino acid binding	7.19E-03
63	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	8.15E-03
64	GO:0008142: oxysterol binding	8.15E-03
65	GO:0003747: translation release factor activity	9.25E-03
66	GO:0015144: carbohydrate transmembrane transporter activity	1.05E-02
67	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.15E-02
68	GO:0004673: protein histidine kinase activity	1.16E-02
69	GO:0005351: sugar:proton symporter activity	1.23E-02
70	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.29E-02
71	GO:0004177: aminopeptidase activity	1.29E-02
72	GO:0000049: tRNA binding	1.42E-02
73	GO:0004519: endonuclease activity	1.52E-02
74	GO:0015266: protein channel activity	1.55E-02
75	GO:0000155: phosphorelay sensor kinase activity	1.55E-02
76	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.69E-02
77	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.98E-02
78	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.98E-02
79	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.98E-02
80	GO:0031418: L-ascorbic acid binding	2.13E-02
81	GO:0043130: ubiquitin binding	2.13E-02
82	GO:0043424: protein histidine kinase binding	2.29E-02
83	GO:0005345: purine nucleobase transmembrane transporter activity	2.29E-02
84	GO:0051087: chaperone binding	2.29E-02
85	GO:0005525: GTP binding	2.32E-02
86	GO:0004812: aminoacyl-tRNA ligase activity	3.12E-02
87	GO:0004527: exonuclease activity	3.48E-02
88	GO:0046873: metal ion transmembrane transporter activity	3.48E-02
89	GO:0008536: Ran GTPase binding	3.48E-02
90	GO:0010181: FMN binding	3.66E-02
91	GO:0050662: coenzyme binding	3.66E-02
92	GO:0019901: protein kinase binding	3.85E-02
93	GO:0019843: rRNA binding	3.93E-02
94	GO:0048038: quinone binding	4.04E-02
95	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.04E-02
96	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.04E-02
97	GO:0016740: transferase activity	4.20E-02
98	GO:0000156: phosphorelay response regulator activity	4.43E-02
99	GO:0051015: actin filament binding	4.43E-02
100	GO:0003684: damaged DNA binding	4.63E-02
101	GO:0016791: phosphatase activity	4.63E-02
102	GO:0003924: GTPase activity	4.65E-02
103	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.69E-02
104	GO:0005200: structural constituent of cytoskeleton	4.83E-02
105	GO:0016787: hydrolase activity	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0009537: proplastid	0.00E+00
2	GO:0005948: acetolactate synthase complex	0.00E+00
3	GO:0009507: chloroplast	2.40E-10
4	GO:0043240: Fanconi anaemia nuclear complex	3.97E-04
5	GO:0071821: FANCM-MHF complex	3.97E-04
6	GO:0009501: amyloplast	4.58E-04
7	GO:0009513: etioplast	8.60E-04
8	GO:0009509: chromoplast	1.40E-03
9	GO:0032432: actin filament bundle	2.02E-03
10	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.71E-03
11	GO:0009570: chloroplast stroma	4.83E-03
12	GO:0009536: plastid	6.23E-03
13	GO:0031305: integral component of mitochondrial inner membrane	7.10E-03
14	GO:0048226: Casparian strip	7.10E-03
15	GO:0030529: intracellular ribonucleoprotein complex	7.61E-03
16	GO:0005680: anaphase-promoting complex	9.25E-03
17	GO:0016604: nuclear body	1.04E-02
18	GO:0005759: mitochondrial matrix	1.12E-02
19	GO:0005884: actin filament	1.29E-02
20	GO:0005938: cell cortex	1.55E-02
21	GO:0016602: CCAAT-binding factor complex	1.55E-02
22	GO:0009574: preprophase band	1.55E-02
23	GO:0030176: integral component of endoplasmic reticulum membrane	1.83E-02
24	GO:0042651: thylakoid membrane	2.29E-02
25	GO:0009532: plastid stroma	2.44E-02
26	GO:0005874: microtubule	2.75E-02
27	GO:0015629: actin cytoskeleton	2.77E-02
28	GO:0031969: chloroplast membrane	2.87E-02
29	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.94E-02
30	GO:0005871: kinesin complex	3.12E-02
31	GO:0031965: nuclear membrane	3.85E-02
32	GO:0009505: plant-type cell wall	4.75E-02
33	GO:0009295: nucleoid	4.83E-02