GO Enrichment Analysis of Co-expressed Genes with
AT3G47650
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009069: serine family amino acid metabolic process | 0.00E+00 |
| 2 | GO:1905421: regulation of plant organ morphogenesis | 0.00E+00 |
| 3 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 4 | GO:0030155: regulation of cell adhesion | 0.00E+00 |
| 5 | GO:0070178: D-serine metabolic process | 0.00E+00 |
| 6 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 7 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 8 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 9 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 10 | GO:0017038: protein import | 0.00E+00 |
| 11 | GO:0032544: plastid translation | 1.44E-10 |
| 12 | GO:0015995: chlorophyll biosynthetic process | 6.47E-07 |
| 13 | GO:0015979: photosynthesis | 3.58E-06 |
| 14 | GO:0006412: translation | 8.07E-06 |
| 15 | GO:0010190: cytochrome b6f complex assembly | 5.89E-05 |
| 16 | GO:0009658: chloroplast organization | 1.48E-04 |
| 17 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.80E-04 |
| 18 | GO:1904964: positive regulation of phytol biosynthetic process | 1.80E-04 |
| 19 | GO:0009735: response to cytokinin | 2.36E-04 |
| 20 | GO:0010027: thylakoid membrane organization | 2.41E-04 |
| 21 | GO:0009817: defense response to fungus, incompatible interaction | 3.44E-04 |
| 22 | GO:0009813: flavonoid biosynthetic process | 3.67E-04 |
| 23 | GO:0018026: peptidyl-lysine monomethylation | 4.05E-04 |
| 24 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 4.05E-04 |
| 25 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.05E-04 |
| 26 | GO:0010207: photosystem II assembly | 5.13E-04 |
| 27 | GO:2001295: malonyl-CoA biosynthetic process | 6.61E-04 |
| 28 | GO:0048281: inflorescence morphogenesis | 6.61E-04 |
| 29 | GO:0006986: response to unfolded protein | 9.45E-04 |
| 30 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 9.45E-04 |
| 31 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 9.45E-04 |
| 32 | GO:0071484: cellular response to light intensity | 9.45E-04 |
| 33 | GO:0051085: chaperone mediated protein folding requiring cofactor | 9.45E-04 |
| 34 | GO:0010148: transpiration | 9.45E-04 |
| 35 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 9.45E-04 |
| 36 | GO:0010731: protein glutathionylation | 9.45E-04 |
| 37 | GO:0042254: ribosome biogenesis | 9.52E-04 |
| 38 | GO:0010109: regulation of photosynthesis | 1.25E-03 |
| 39 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.25E-03 |
| 40 | GO:0006546: glycine catabolic process | 1.25E-03 |
| 41 | GO:0009742: brassinosteroid mediated signaling pathway | 1.56E-03 |
| 42 | GO:0006564: L-serine biosynthetic process | 1.59E-03 |
| 43 | GO:0016120: carotene biosynthetic process | 1.59E-03 |
| 44 | GO:0000304: response to singlet oxygen | 1.59E-03 |
| 45 | GO:0006563: L-serine metabolic process | 1.96E-03 |
| 46 | GO:0006751: glutathione catabolic process | 1.96E-03 |
| 47 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.96E-03 |
| 48 | GO:0000741: karyogamy | 1.96E-03 |
| 49 | GO:0009955: adaxial/abaxial pattern specification | 2.35E-03 |
| 50 | GO:1901259: chloroplast rRNA processing | 2.35E-03 |
| 51 | GO:0006633: fatty acid biosynthetic process | 2.57E-03 |
| 52 | GO:0010103: stomatal complex morphogenesis | 2.77E-03 |
| 53 | GO:0070370: cellular heat acclimation | 2.77E-03 |
| 54 | GO:0006605: protein targeting | 3.21E-03 |
| 55 | GO:0007155: cell adhesion | 3.21E-03 |
| 56 | GO:0048564: photosystem I assembly | 3.21E-03 |
| 57 | GO:0009739: response to gibberellin | 3.34E-03 |
| 58 | GO:0071482: cellular response to light stimulus | 3.67E-03 |
| 59 | GO:0001558: regulation of cell growth | 3.67E-03 |
| 60 | GO:0010206: photosystem II repair | 4.15E-03 |
| 61 | GO:0046916: cellular transition metal ion homeostasis | 4.15E-03 |
| 62 | GO:0030001: metal ion transport | 4.53E-03 |
| 63 | GO:0006779: porphyrin-containing compound biosynthetic process | 4.65E-03 |
| 64 | GO:0006631: fatty acid metabolic process | 4.72E-03 |
| 65 | GO:0045036: protein targeting to chloroplast | 5.18E-03 |
| 66 | GO:0009641: shade avoidance | 5.18E-03 |
| 67 | GO:0006949: syncytium formation | 5.18E-03 |
| 68 | GO:0006782: protoporphyrinogen IX biosynthetic process | 5.18E-03 |
| 69 | GO:0018119: peptidyl-cysteine S-nitrosylation | 5.72E-03 |
| 70 | GO:0009773: photosynthetic electron transport in photosystem I | 5.72E-03 |
| 71 | GO:0006415: translational termination | 5.72E-03 |
| 72 | GO:0019684: photosynthesis, light reaction | 5.72E-03 |
| 73 | GO:0005983: starch catabolic process | 6.28E-03 |
| 74 | GO:0016024: CDP-diacylglycerol biosynthetic process | 6.28E-03 |
| 75 | GO:0009664: plant-type cell wall organization | 6.43E-03 |
| 76 | GO:0009767: photosynthetic electron transport chain | 6.86E-03 |
| 77 | GO:0051603: proteolysis involved in cellular protein catabolic process | 7.14E-03 |
| 78 | GO:0010143: cutin biosynthetic process | 7.46E-03 |
| 79 | GO:0010020: chloroplast fission | 7.46E-03 |
| 80 | GO:0019253: reductive pentose-phosphate cycle | 7.46E-03 |
| 81 | GO:0009740: gibberellic acid mediated signaling pathway | 9.25E-03 |
| 82 | GO:0009944: polarity specification of adaxial/abaxial axis | 9.37E-03 |
| 83 | GO:0051302: regulation of cell division | 1.00E-02 |
| 84 | GO:0006418: tRNA aminoacylation for protein translation | 1.00E-02 |
| 85 | GO:0031408: oxylipin biosynthetic process | 1.07E-02 |
| 86 | GO:0030245: cellulose catabolic process | 1.14E-02 |
| 87 | GO:0016226: iron-sulfur cluster assembly | 1.14E-02 |
| 88 | GO:0001944: vasculature development | 1.22E-02 |
| 89 | GO:0009561: megagametogenesis | 1.29E-02 |
| 90 | GO:0016117: carotenoid biosynthetic process | 1.37E-02 |
| 91 | GO:0000413: protein peptidyl-prolyl isomerization | 1.44E-02 |
| 92 | GO:0010197: polar nucleus fusion | 1.52E-02 |
| 93 | GO:0048544: recognition of pollen | 1.60E-02 |
| 94 | GO:0009646: response to absence of light | 1.60E-02 |
| 95 | GO:0040008: regulation of growth | 1.63E-02 |
| 96 | GO:0032502: developmental process | 1.85E-02 |
| 97 | GO:0010090: trichome morphogenesis | 1.94E-02 |
| 98 | GO:0009828: plant-type cell wall loosening | 2.03E-02 |
| 99 | GO:0009627: systemic acquired resistance | 2.48E-02 |
| 100 | GO:0018298: protein-chromophore linkage | 2.77E-02 |
| 101 | GO:0048481: plant ovule development | 2.77E-02 |
| 102 | GO:0006810: transport | 2.83E-02 |
| 103 | GO:0010119: regulation of stomatal movement | 3.08E-02 |
| 104 | GO:0080167: response to karrikin | 3.27E-02 |
| 105 | GO:0009853: photorespiration | 3.28E-02 |
| 106 | GO:0010114: response to red light | 3.93E-02 |
| 107 | GO:0009965: leaf morphogenesis | 4.27E-02 |
| 108 | GO:0032259: methylation | 4.61E-02 |
| 109 | GO:0042538: hyperosmotic salinity response | 4.62E-02 |
| 110 | GO:0006364: rRNA processing | 4.86E-02 |
| 111 | GO:0006486: protein glycosylation | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 2 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 3 | GO:0030378: serine racemase activity | 0.00E+00 |
| 4 | GO:0003941: L-serine ammonia-lyase activity | 0.00E+00 |
| 5 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 6 | GO:0008721: D-serine ammonia-lyase activity | 0.00E+00 |
| 7 | GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity | 0.00E+00 |
| 8 | GO:0019843: rRNA binding | 2.81E-09 |
| 9 | GO:0045430: chalcone isomerase activity | 1.12E-07 |
| 10 | GO:0003735: structural constituent of ribosome | 3.70E-07 |
| 11 | GO:0005504: fatty acid binding | 5.74E-06 |
| 12 | GO:0016851: magnesium chelatase activity | 1.33E-05 |
| 13 | GO:0005528: FK506 binding | 3.60E-05 |
| 14 | GO:0003989: acetyl-CoA carboxylase activity | 3.97E-05 |
| 15 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 8.18E-05 |
| 16 | GO:0005080: protein kinase C binding | 1.80E-04 |
| 17 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.80E-04 |
| 18 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.80E-04 |
| 19 | GO:0050308: sugar-phosphatase activity | 1.80E-04 |
| 20 | GO:0009374: biotin binding | 1.80E-04 |
| 21 | GO:0019203: carbohydrate phosphatase activity | 1.80E-04 |
| 22 | GO:0004618: phosphoglycerate kinase activity | 4.05E-04 |
| 23 | GO:0003839: gamma-glutamylcyclotransferase activity | 4.05E-04 |
| 24 | GO:0004617: phosphoglycerate dehydrogenase activity | 4.05E-04 |
| 25 | GO:0004047: aminomethyltransferase activity | 4.05E-04 |
| 26 | GO:0016630: protochlorophyllide reductase activity | 4.05E-04 |
| 27 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 4.05E-04 |
| 28 | GO:0009055: electron carrier activity | 5.36E-04 |
| 29 | GO:0004075: biotin carboxylase activity | 6.61E-04 |
| 30 | GO:0004751: ribose-5-phosphate isomerase activity | 6.61E-04 |
| 31 | GO:0045174: glutathione dehydrogenase (ascorbate) activity | 6.61E-04 |
| 32 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 6.61E-04 |
| 33 | GO:0002161: aminoacyl-tRNA editing activity | 6.61E-04 |
| 34 | GO:0004148: dihydrolipoyl dehydrogenase activity | 6.61E-04 |
| 35 | GO:0043023: ribosomal large subunit binding | 9.45E-04 |
| 36 | GO:0008097: 5S rRNA binding | 9.45E-04 |
| 37 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 9.45E-04 |
| 38 | GO:0016149: translation release factor activity, codon specific | 9.45E-04 |
| 39 | GO:0042277: peptide binding | 1.25E-03 |
| 40 | GO:0016279: protein-lysine N-methyltransferase activity | 1.25E-03 |
| 41 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.25E-03 |
| 42 | GO:0019199: transmembrane receptor protein kinase activity | 1.25E-03 |
| 43 | GO:0043495: protein anchor | 1.25E-03 |
| 44 | GO:0003959: NADPH dehydrogenase activity | 1.59E-03 |
| 45 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.96E-03 |
| 46 | GO:2001070: starch binding | 1.96E-03 |
| 47 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.96E-03 |
| 48 | GO:0008483: transaminase activity | 2.16E-03 |
| 49 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 2.35E-03 |
| 50 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.35E-03 |
| 51 | GO:0019899: enzyme binding | 2.77E-03 |
| 52 | GO:0004033: aldo-keto reductase (NADP) activity | 3.21E-03 |
| 53 | GO:0046914: transition metal ion binding | 3.67E-03 |
| 54 | GO:0005509: calcium ion binding | 3.87E-03 |
| 55 | GO:0042802: identical protein binding | 3.93E-03 |
| 56 | GO:0003747: translation release factor activity | 4.15E-03 |
| 57 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 4.15E-03 |
| 58 | GO:0004185: serine-type carboxypeptidase activity | 5.12E-03 |
| 59 | GO:0008378: galactosyltransferase activity | 6.28E-03 |
| 60 | GO:0000049: tRNA binding | 6.28E-03 |
| 61 | GO:0031072: heat shock protein binding | 6.86E-03 |
| 62 | GO:0008266: poly(U) RNA binding | 7.46E-03 |
| 63 | GO:0051536: iron-sulfur cluster binding | 9.37E-03 |
| 64 | GO:0005507: copper ion binding | 9.42E-03 |
| 65 | GO:0051082: unfolded protein binding | 9.83E-03 |
| 66 | GO:0051087: chaperone binding | 1.00E-02 |
| 67 | GO:0043424: protein histidine kinase binding | 1.00E-02 |
| 68 | GO:0046872: metal ion binding | 1.15E-02 |
| 69 | GO:0022891: substrate-specific transmembrane transporter activity | 1.22E-02 |
| 70 | GO:0008810: cellulase activity | 1.22E-02 |
| 71 | GO:0030170: pyridoxal phosphate binding | 1.37E-02 |
| 72 | GO:0004812: aminoacyl-tRNA ligase activity | 1.37E-02 |
| 73 | GO:0001085: RNA polymerase II transcription factor binding | 1.52E-02 |
| 74 | GO:0048038: quinone binding | 1.77E-02 |
| 75 | GO:0016791: phosphatase activity | 2.03E-02 |
| 76 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 2.11E-02 |
| 77 | GO:0016597: amino acid binding | 2.20E-02 |
| 78 | GO:0016168: chlorophyll binding | 2.39E-02 |
| 79 | GO:0008168: methyltransferase activity | 2.54E-02 |
| 80 | GO:0004721: phosphoprotein phosphatase activity | 2.58E-02 |
| 81 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.77E-02 |
| 82 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 3.08E-02 |
| 83 | GO:0004364: glutathione transferase activity | 3.82E-02 |
| 84 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.16E-02 |
| 85 | GO:0035091: phosphatidylinositol binding | 4.16E-02 |
| 86 | GO:0005198: structural molecule activity | 4.27E-02 |
| 87 | GO:0051287: NAD binding | 4.50E-02 |
| 88 | GO:0003924: GTPase activity | 4.81E-02 |
| 89 | GO:0003690: double-stranded DNA binding | 4.98E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009571: proplastid stroma | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.41E-45 |
| 3 | GO:0009570: chloroplast stroma | 2.24E-39 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 5.45E-28 |
| 5 | GO:0009579: thylakoid | 3.65E-25 |
| 6 | GO:0009941: chloroplast envelope | 4.22E-21 |
| 7 | GO:0009534: chloroplast thylakoid | 3.19E-19 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 3.06E-17 |
| 9 | GO:0031977: thylakoid lumen | 9.46E-13 |
| 10 | GO:0005840: ribosome | 9.47E-10 |
| 11 | GO:0009654: photosystem II oxygen evolving complex | 1.44E-08 |
| 12 | GO:0019898: extrinsic component of membrane | 5.27E-06 |
| 13 | GO:0010007: magnesium chelatase complex | 5.74E-06 |
| 14 | GO:0030095: chloroplast photosystem II | 2.08E-05 |
| 15 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.80E-04 |
| 16 | GO:0009547: plastid ribosome | 1.80E-04 |
| 17 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.13E-04 |
| 18 | GO:0009317: acetyl-CoA carboxylase complex | 6.61E-04 |
| 19 | GO:0042651: thylakoid membrane | 7.77E-04 |
| 20 | GO:0005960: glycine cleavage complex | 9.45E-04 |
| 21 | GO:0031969: chloroplast membrane | 1.28E-03 |
| 22 | GO:0009533: chloroplast stromal thylakoid | 2.77E-03 |
| 23 | GO:0009707: chloroplast outer membrane | 3.15E-03 |
| 24 | GO:0009539: photosystem II reaction center | 3.67E-03 |
| 25 | GO:0046658: anchored component of plasma membrane | 4.14E-03 |
| 26 | GO:0005763: mitochondrial small ribosomal subunit | 4.15E-03 |
| 27 | GO:0016020: membrane | 4.74E-03 |
| 28 | GO:0000311: plastid large ribosomal subunit | 6.28E-03 |
| 29 | GO:0009536: plastid | 6.36E-03 |
| 30 | GO:0009505: plant-type cell wall | 6.61E-03 |
| 31 | GO:0009508: plastid chromosome | 6.86E-03 |
| 32 | GO:0000312: plastid small ribosomal subunit | 7.46E-03 |
| 33 | GO:0043234: protein complex | 8.71E-03 |
| 34 | GO:0009532: plastid stroma | 1.07E-02 |
| 35 | GO:0048046: apoplast | 1.50E-02 |
| 36 | GO:0009523: photosystem II | 1.68E-02 |
| 37 | GO:0005618: cell wall | 1.76E-02 |
| 38 | GO:0005615: extracellular space | 1.91E-02 |
| 39 | GO:0010319: stromule | 2.11E-02 |
| 40 | GO:0009295: nucleoid | 2.11E-02 |
| 41 | GO:0005667: transcription factor complex | 2.48E-02 |
| 42 | GO:0015934: large ribosomal subunit | 3.08E-02 |