Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G47560

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0098586: cellular response to virus0.00E+00
2GO:0017009: protein-phycocyanobilin linkage0.00E+00
3GO:0090279: regulation of calcium ion import0.00E+00
4GO:0042821: pyridoxal biosynthetic process0.00E+00
5GO:0042820: vitamin B6 catabolic process0.00E+00
6GO:0006114: glycerol biosynthetic process0.00E+00
7GO:1905177: tracheary element differentiation0.00E+00
8GO:0008298: intracellular mRNA localization0.00E+00
9GO:0071474: cellular hyperosmotic response0.00E+00
10GO:0006399: tRNA metabolic process0.00E+00
11GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
12GO:0070979: protein K11-linked ubiquitination0.00E+00
13GO:1905421: regulation of plant organ morphogenesis0.00E+00
14GO:0030155: regulation of cell adhesion0.00E+00
15GO:2001141: regulation of RNA biosynthetic process1.33E-07
16GO:0045038: protein import into chloroplast thylakoid membrane8.77E-07
17GO:0071482: cellular response to light stimulus1.04E-05
18GO:0006352: DNA-templated transcription, initiation3.26E-05
19GO:0009658: chloroplast organization9.29E-05
20GO:0010190: cytochrome b6f complex assembly1.27E-04
21GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process2.89E-04
22GO:0009443: pyridoxal 5'-phosphate salvage2.89E-04
23GO:0015969: guanosine tetraphosphate metabolic process2.89E-04
24GO:0031426: polycistronic mRNA processing2.89E-04
25GO:1904966: positive regulation of vitamin E biosynthetic process2.89E-04
26GO:0043266: regulation of potassium ion transport2.89E-04
27GO:0051775: response to redox state2.89E-04
28GO:0000481: maturation of 5S rRNA2.89E-04
29GO:1904964: positive regulation of phytol biosynthetic process2.89E-04
30GO:0042371: vitamin K biosynthetic process2.89E-04
31GO:0043087: regulation of GTPase activity2.89E-04
32GO:0071461: cellular response to redox state2.89E-04
33GO:2000021: regulation of ion homeostasis2.89E-04
34GO:1902458: positive regulation of stomatal opening2.89E-04
35GO:0034337: RNA folding2.89E-04
36GO:0032544: plastid translation3.53E-04
37GO:0048507: meristem development4.25E-04
38GO:0046741: transport of virus in host, tissue to tissue6.34E-04
39GO:0080005: photosystem stoichiometry adjustment6.34E-04
40GO:0060359: response to ammonium ion6.34E-04
41GO:1902326: positive regulation of chlorophyll biosynthetic process6.34E-04
42GO:0000256: allantoin catabolic process6.34E-04
43GO:1903426: regulation of reactive oxygen species biosynthetic process6.34E-04
44GO:0051262: protein tetramerization6.34E-04
45GO:0010275: NAD(P)H dehydrogenase complex assembly6.34E-04
46GO:0019684: photosynthesis, light reaction6.77E-04
47GO:0043085: positive regulation of catalytic activity6.77E-04
48GO:0015995: chlorophyll biosynthetic process7.20E-04
49GO:0009767: photosynthetic electron transport chain8.76E-04
50GO:0010207: photosystem II assembly9.86E-04
51GO:0015979: photosynthesis1.01E-03
52GO:0031022: nuclear migration along microfilament1.03E-03
53GO:0010136: ureide catabolic process1.03E-03
54GO:0031145: anaphase-promoting complex-dependent catabolic process1.03E-03
55GO:0010623: programmed cell death involved in cell development1.03E-03
56GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.03E-03
57GO:0006696: ergosterol biosynthetic process1.03E-03
58GO:0043157: response to cation stress1.03E-03
59GO:0005977: glycogen metabolic process1.03E-03
60GO:0000913: preprophase band assembly1.03E-03
61GO:0048281: inflorescence morphogenesis1.03E-03
62GO:0009226: nucleotide-sugar biosynthetic process1.47E-03
63GO:0006145: purine nucleobase catabolic process1.47E-03
64GO:0010148: transpiration1.47E-03
65GO:0043572: plastid fission1.47E-03
66GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.47E-03
67GO:0030071: regulation of mitotic metaphase/anaphase transition1.47E-03
68GO:0006107: oxaloacetate metabolic process1.47E-03
69GO:0010239: chloroplast mRNA processing1.47E-03
70GO:0051302: regulation of cell division1.49E-03
71GO:0031122: cytoplasmic microtubule organization1.97E-03
72GO:0006546: glycine catabolic process1.97E-03
73GO:0010508: positive regulation of autophagy1.97E-03
74GO:0006734: NADH metabolic process1.97E-03
75GO:0010021: amylopectin biosynthetic process1.97E-03
76GO:0051322: anaphase1.97E-03
77GO:0006661: phosphatidylinositol biosynthetic process1.97E-03
78GO:0006109: regulation of carbohydrate metabolic process1.97E-03
79GO:0009306: protein secretion2.12E-03
80GO:0016117: carotenoid biosynthetic process2.30E-03
81GO:0032876: negative regulation of DNA endoreduplication2.52E-03
82GO:0080110: sporopollenin biosynthetic process2.52E-03
83GO:0043097: pyrimidine nucleoside salvage2.52E-03
84GO:0009904: chloroplast accumulation movement2.52E-03
85GO:0009107: lipoate biosynthetic process2.52E-03
86GO:0016123: xanthophyll biosynthetic process2.52E-03
87GO:0006662: glycerol ether metabolic process2.67E-03
88GO:0008654: phospholipid biosynthetic process3.08E-03
89GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.11E-03
90GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.11E-03
91GO:0006206: pyrimidine nucleobase metabolic process3.11E-03
92GO:0050665: hydrogen peroxide biosynthetic process3.11E-03
93GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.11E-03
94GO:0009959: negative gravitropism3.11E-03
95GO:0032502: developmental process3.52E-03
96GO:0005975: carbohydrate metabolic process3.54E-03
97GO:0009903: chloroplast avoidance movement3.74E-03
98GO:0010189: vitamin E biosynthetic process3.74E-03
99GO:0009854: oxidative photosynthetic carbon pathway3.74E-03
100GO:0010019: chloroplast-nucleus signaling pathway3.74E-03
101GO:0070370: cellular heat acclimation4.41E-03
102GO:0006614: SRP-dependent cotranslational protein targeting to membrane4.41E-03
103GO:0009645: response to low light intensity stimulus4.41E-03
104GO:0006400: tRNA modification4.41E-03
105GO:0010103: stomatal complex morphogenesis4.41E-03
106GO:0009395: phospholipid catabolic process4.41E-03
107GO:0000910: cytokinesis4.50E-03
108GO:0010027: thylakoid membrane organization4.76E-03
109GO:0009690: cytokinin metabolic process5.12E-03
110GO:0042255: ribosome assembly5.12E-03
111GO:0006605: protein targeting5.12E-03
112GO:0006353: DNA-templated transcription, termination5.12E-03
113GO:0032875: regulation of DNA endoreduplication5.12E-03
114GO:0032508: DNA duplex unwinding5.12E-03
115GO:2000070: regulation of response to water deprivation5.12E-03
116GO:0010492: maintenance of shoot apical meristem identity5.12E-03
117GO:0007155: cell adhesion5.12E-03
118GO:0048564: photosystem I assembly5.12E-03
119GO:0001558: regulation of cell growth5.87E-03
120GO:0010204: defense response signaling pathway, resistance gene-independent5.87E-03
121GO:0017004: cytochrome complex assembly5.87E-03
122GO:0018298: protein-chromophore linkage6.21E-03
123GO:0010206: photosystem II repair6.65E-03
124GO:0006754: ATP biosynthetic process6.65E-03
125GO:0000373: Group II intron splicing6.65E-03
126GO:0034599: cellular response to oxidative stress8.24E-03
127GO:0019538: protein metabolic process8.33E-03
128GO:0043069: negative regulation of programmed cell death8.33E-03
129GO:0009409: response to cold8.45E-03
130GO:0009089: lysine biosynthetic process via diaminopimelate9.22E-03
131GO:0018119: peptidyl-cysteine S-nitrosylation9.22E-03
132GO:0009684: indoleacetic acid biosynthetic process9.22E-03
133GO:0045037: protein import into chloroplast stroma1.01E-02
134GO:0009644: response to high light intensity1.10E-02
135GO:0006108: malate metabolic process1.11E-02
136GO:0010020: chloroplast fission1.21E-02
137GO:0019253: reductive pentose-phosphate cycle1.21E-02
138GO:0042538: hyperosmotic salinity response1.28E-02
139GO:0006833: water transport1.41E-02
140GO:0009944: polarity specification of adaxial/abaxial axis1.52E-02
141GO:0008299: isoprenoid biosynthetic process1.63E-02
142GO:0007017: microtubule-based process1.63E-02
143GO:0009768: photosynthesis, light harvesting in photosystem I1.63E-02
144GO:0006096: glycolytic process1.63E-02
145GO:0010431: seed maturation1.75E-02
146GO:0006730: one-carbon metabolic process1.86E-02
147GO:0001944: vasculature development1.98E-02
148GO:0019722: calcium-mediated signaling2.10E-02
149GO:0010089: xylem development2.10E-02
150GO:0010584: pollen exine formation2.10E-02
151GO:0008033: tRNA processing2.35E-02
152GO:0034220: ion transmembrane transport2.35E-02
153GO:0010087: phloem or xylem histogenesis2.35E-02
154GO:0045489: pectin biosynthetic process2.48E-02
155GO:0048868: pollen tube development2.48E-02
156GO:0006629: lipid metabolic process2.60E-02
157GO:0007018: microtubule-based movement2.61E-02
158GO:0009791: post-embryonic development2.75E-02
159GO:0019252: starch biosynthetic process2.75E-02
160GO:0006810: transport2.84E-02
161GO:0000302: response to reactive oxygen species2.88E-02
162GO:0010583: response to cyclopentenone3.02E-02
163GO:0016032: viral process3.02E-02
164GO:0009630: gravitropism3.02E-02
165GO:0007267: cell-cell signaling3.45E-02
166GO:0016126: sterol biosynthetic process3.75E-02
167GO:0008380: RNA splicing4.04E-02
168GO:0009627: systemic acquired resistance4.05E-02
169GO:0016311: dephosphorylation4.37E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
3GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
4GO:0043864: indoleacetamide hydrolase activity0.00E+00
5GO:0050613: delta14-sterol reductase activity0.00E+00
6GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
7GO:0010276: phytol kinase activity0.00E+00
8GO:0008974: phosphoribulokinase activity0.00E+00
9GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
10GO:0046905: phytoene synthase activity0.00E+00
11GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
12GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
13GO:0005048: signal sequence binding0.00E+00
14GO:0043136: glycerol-3-phosphatase activity0.00E+00
15GO:0000121: glycerol-1-phosphatase activity0.00E+00
16GO:0016987: sigma factor activity3.87E-07
17GO:0001053: plastid sigma factor activity3.87E-07
18GO:0070402: NADPH binding1.37E-05
19GO:0019899: enzyme binding2.27E-04
20GO:0009496: plastoquinol--plastocyanin reductase activity2.89E-04
21GO:0080132: fatty acid alpha-hydroxylase activity2.89E-04
22GO:0008568: microtubule-severing ATPase activity2.89E-04
23GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity2.89E-04
24GO:0051996: squalene synthase activity2.89E-04
25GO:0008746: NAD(P)+ transhydrogenase activity2.89E-04
26GO:0004328: formamidase activity2.89E-04
27GO:0046906: tetrapyrrole binding2.89E-04
28GO:0005227: calcium activated cation channel activity2.89E-04
29GO:0019156: isoamylase activity6.34E-04
30GO:0004802: transketolase activity6.34E-04
31GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.34E-04
32GO:0048531: beta-1,3-galactosyltransferase activity6.34E-04
33GO:0008728: GTP diphosphokinase activity6.34E-04
34GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.34E-04
35GO:0010291: carotene beta-ring hydroxylase activity6.34E-04
36GO:0004103: choline kinase activity6.34E-04
37GO:0080045: quercetin 3'-O-glucosyltransferase activity6.34E-04
38GO:0004326: tetrahydrofolylpolyglutamate synthase activity6.34E-04
39GO:0009977: proton motive force dependent protein transmembrane transporter activity6.34E-04
40GO:0004047: aminomethyltransferase activity6.34E-04
41GO:0042973: glucan endo-1,3-beta-D-glucosidase activity9.86E-04
42GO:0016992: lipoate synthase activity1.03E-03
43GO:0005528: FK506 binding1.35E-03
44GO:0048027: mRNA 5'-UTR binding1.47E-03
45GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.47E-03
46GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.47E-03
47GO:0016851: magnesium chelatase activity1.47E-03
48GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.47E-03
49GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.47E-03
50GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.47E-03
51GO:0080032: methyl jasmonate esterase activity1.97E-03
52GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds1.97E-03
53GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.97E-03
54GO:0019199: transmembrane receptor protein kinase activity1.97E-03
55GO:0043495: protein anchor1.97E-03
56GO:0042277: peptide binding1.97E-03
57GO:0008891: glycolate oxidase activity1.97E-03
58GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.97E-03
59GO:0004045: aminoacyl-tRNA hydrolase activity1.97E-03
60GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.20E-03
61GO:0047134: protein-disulfide reductase activity2.30E-03
62GO:0004040: amidase activity2.52E-03
63GO:0008374: O-acyltransferase activity2.52E-03
64GO:0016491: oxidoreductase activity2.60E-03
65GO:0004791: thioredoxin-disulfide reductase activity2.87E-03
66GO:0005525: GTP binding3.10E-03
67GO:0004556: alpha-amylase activity3.11E-03
68GO:0004462: lactoylglutathione lyase activity3.11E-03
69GO:0016615: malate dehydrogenase activity3.11E-03
70GO:0008200: ion channel inhibitor activity3.11E-03
71GO:0080046: quercetin 4'-O-glucosyltransferase activity3.11E-03
72GO:0004605: phosphatidate cytidylyltransferase activity3.11E-03
73GO:0080030: methyl indole-3-acetate esterase activity3.11E-03
74GO:0016887: ATPase activity3.42E-03
75GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.74E-03
76GO:0004849: uridine kinase activity3.74E-03
77GO:0030060: L-malate dehydrogenase activity3.74E-03
78GO:0005261: cation channel activity3.74E-03
79GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.75E-03
80GO:0016168: chlorophyll binding5.03E-03
81GO:0043022: ribosome binding5.12E-03
82GO:0004033: aldo-keto reductase (NADP) activity5.12E-03
83GO:0008312: 7S RNA binding5.12E-03
84GO:0003924: GTPase activity6.56E-03
85GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism6.65E-03
86GO:0030955: potassium ion binding7.48E-03
87GO:0004743: pyruvate kinase activity7.48E-03
88GO:0003993: acid phosphatase activity8.24E-03
89GO:0008047: enzyme activator activity8.33E-03
90GO:0004565: beta-galactosidase activity1.11E-02
91GO:0008081: phosphoric diester hydrolase activity1.11E-02
92GO:0031072: heat shock protein binding1.11E-02
93GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.19E-02
94GO:0016788: hydrolase activity, acting on ester bonds1.24E-02
95GO:0031409: pigment binding1.41E-02
96GO:0004857: enzyme inhibitor activity1.52E-02
97GO:0016874: ligase activity1.85E-02
98GO:0022891: substrate-specific transmembrane transporter activity1.98E-02
99GO:0015035: protein disulfide oxidoreductase activity2.02E-02
100GO:0003727: single-stranded RNA binding2.10E-02
101GO:0008080: N-acetyltransferase activity2.48E-02
102GO:0050662: coenzyme binding2.61E-02
103GO:0010181: FMN binding2.61E-02
104GO:0016853: isomerase activity2.61E-02
105GO:0016829: lyase activity2.66E-02
106GO:0048038: quinone binding2.88E-02
107GO:0003729: mRNA binding2.90E-02
108GO:0008483: transaminase activity3.45E-02
109GO:0005200: structural constituent of cytoskeleton3.45E-02
110GO:0008017: microtubule binding3.55E-02
111GO:0015250: water channel activity3.75E-02
112GO:0005509: calcium ion binding3.93E-02
113GO:0042802: identical protein binding4.30E-02
114GO:0008236: serine-type peptidase activity4.37E-02
115GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.53E-02
116GO:0015238: drug transmembrane transporter activity4.69E-02
117GO:0005096: GTPase activator activity4.69E-02
118GO:0004222: metalloendopeptidase activity4.85E-02
RankGO TermAdjusted P value
1GO:0010368: chloroplast isoamylase complex0.00E+00
2GO:0009507: chloroplast5.71E-30
3GO:0009535: chloroplast thylakoid membrane1.59E-15
4GO:0009941: chloroplast envelope8.14E-09
5GO:0009570: chloroplast stroma1.06E-07
6GO:0009543: chloroplast thylakoid lumen8.43E-07
7GO:0080085: signal recognition particle, chloroplast targeting3.83E-06
8GO:0009579: thylakoid1.67E-05
9GO:0031969: chloroplast membrane2.10E-05
10GO:0031977: thylakoid lumen1.80E-04
11GO:0009782: photosystem I antenna complex2.89E-04
12GO:0009344: nitrite reductase complex [NAD(P)H]2.89E-04
13GO:0005786: signal recognition particle, endoplasmic reticulum targeting3.53E-04
14GO:0046658: anchored component of plasma membrane4.13E-04
15GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.25E-04
16GO:0009574: preprophase band8.76E-04
17GO:0033281: TAT protein transport complex1.03E-03
18GO:0010007: magnesium chelatase complex1.03E-03
19GO:0015630: microtubule cytoskeleton1.47E-03
20GO:0009654: photosystem II oxygen evolving complex1.49E-03
21GO:0042651: thylakoid membrane1.49E-03
22GO:0009534: chloroplast thylakoid1.68E-03
23GO:0009512: cytochrome b6f complex2.52E-03
24GO:0019898: extrinsic component of membrane3.08E-03
25GO:0010319: stromule4.24E-03
26GO:0005623: cell4.75E-03
27GO:0030529: intracellular ribonucleoprotein complex4.76E-03
28GO:0042644: chloroplast nucleoid6.65E-03
29GO:0005680: anaphase-promoting complex6.65E-03
30GO:0016604: nuclear body7.48E-03
31GO:0005773: vacuole9.08E-03
32GO:0031225: anchored component of membrane9.42E-03
33GO:0032040: small-subunit processome1.01E-02
34GO:0030095: chloroplast photosystem II1.21E-02
35GO:0030176: integral component of endoplasmic reticulum membrane1.31E-02
36GO:0030076: light-harvesting complex1.31E-02
37GO:0005874: microtubule1.52E-02
38GO:0016021: integral component of membrane1.60E-02
39GO:0005871: kinesin complex2.23E-02
40GO:0048046: apoplast2.27E-02
41GO:0010287: plastoglobule2.33E-02
42GO:0009524: phragmoplast2.59E-02
43GO:0009522: photosystem I2.61E-02
44GO:0009504: cell plate2.75E-02
45GO:0009523: photosystem II2.75E-02
46GO:0005694: chromosome3.02E-02
47GO:0009707: chloroplast outer membrane4.53E-02
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Gene type



Gene DE type