Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G47160

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015805: S-adenosyl-L-methionine transport0.00E+00
2GO:1904277: negative regulation of wax biosynthetic process0.00E+00
3GO:0002184: cytoplasmic translational termination0.00E+00
4GO:0005983: starch catabolic process1.85E-05
5GO:0006747: FAD biosynthetic process2.19E-05
6GO:0000023: maltose metabolic process2.19E-05
7GO:0005980: glycogen catabolic process2.19E-05
8GO:0030198: extracellular matrix organization2.19E-05
9GO:0009629: response to gravity5.64E-05
10GO:0019388: galactose catabolic process5.64E-05
11GO:0007154: cell communication5.64E-05
12GO:0006633: fatty acid biosynthetic process6.59E-05
13GO:0019252: starch biosynthetic process9.89E-05
14GO:0010731: protein glutathionylation1.49E-04
15GO:0009590: detection of gravity1.49E-04
16GO:0022622: root system development2.04E-04
17GO:0009817: defense response to fungus, incompatible interaction2.11E-04
18GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.24E-04
19GO:0009959: negative gravitropism3.24E-04
20GO:2000033: regulation of seed dormancy process3.89E-04
21GO:0032880: regulation of protein localization4.56E-04
22GO:0010161: red light signaling pathway4.56E-04
23GO:0009231: riboflavin biosynthetic process5.25E-04
24GO:0005978: glycogen biosynthetic process5.25E-04
25GO:0010100: negative regulation of photomorphogenesis5.98E-04
26GO:0032544: plastid translation5.98E-04
27GO:0010099: regulation of photomorphogenesis5.98E-04
28GO:0006783: heme biosynthetic process6.71E-04
29GO:1900865: chloroplast RNA modification7.48E-04
30GO:0006006: glucose metabolic process1.07E-03
31GO:2000012: regulation of auxin polar transport1.07E-03
32GO:0010102: lateral root morphogenesis1.07E-03
33GO:0009266: response to temperature stimulus1.16E-03
34GO:0006338: chromatin remodeling1.43E-03
35GO:0010187: negative regulation of seed germination1.43E-03
36GO:0009658: chloroplast organization1.67E-03
37GO:0009686: gibberellin biosynthetic process1.83E-03
38GO:0008284: positive regulation of cell proliferation2.04E-03
39GO:0009958: positive gravitropism2.26E-03
40GO:0005975: carbohydrate metabolic process2.72E-03
41GO:0019760: glucosinolate metabolic process2.97E-03
42GO:0010029: regulation of seed germination3.47E-03
43GO:0015995: chlorophyll biosynthetic process3.73E-03
44GO:0000160: phosphorelay signal transduction system4.14E-03
45GO:0009813: flavonoid biosynthetic process4.14E-03
46GO:0009734: auxin-activated signaling pathway4.25E-03
47GO:0048527: lateral root development4.42E-03
48GO:0009735: response to cytokinin4.88E-03
49GO:0006839: mitochondrial transport5.15E-03
50GO:0006631: fatty acid metabolic process5.30E-03
51GO:0009736: cytokinin-activated signaling pathway6.88E-03
52GO:0009740: gibberellic acid mediated signaling pathway8.43E-03
53GO:0009624: response to nematode8.79E-03
54GO:0009414: response to water deprivation1.05E-02
55GO:0009790: embryo development1.15E-02
56GO:0009733: response to auxin1.21E-02
57GO:0007623: circadian rhythm1.29E-02
58GO:0008380: RNA splicing1.46E-02
59GO:0009409: response to cold1.47E-02
60GO:0045454: cell redox homeostasis2.33E-02
61GO:0008152: metabolic process2.90E-02
62GO:0009873: ethylene-activated signaling pathway3.25E-02
63GO:0045893: positive regulation of transcription, DNA-templated4.49E-02
64GO:0006457: protein folding4.89E-02
RankGO TermAdjusted P value
1GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
2GO:0097100: supercoiled DNA binding0.00E+00
3GO:0005201: extracellular matrix structural constituent0.00E+00
4GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
5GO:0005363: maltose transmembrane transporter activity0.00E+00
6GO:0010303: limit dextrinase activity0.00E+00
7GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
8GO:0051060: pullulanase activity0.00E+00
9GO:0004645: phosphorylase activity2.19E-05
10GO:0008184: glycogen phosphorylase activity2.19E-05
11GO:0010313: phytochrome binding2.19E-05
12GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity5.64E-05
13GO:0004614: phosphoglucomutase activity5.64E-05
14GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity5.64E-05
15GO:0003919: FMN adenylyltransferase activity5.64E-05
16GO:0005504: fatty acid binding9.94E-05
17GO:0045174: glutathione dehydrogenase (ascorbate) activity9.94E-05
18GO:0043023: ribosomal large subunit binding1.49E-04
19GO:0045430: chalcone isomerase activity2.04E-04
20GO:0004556: alpha-amylase activity3.24E-04
21GO:0000976: transcription regulatory region sequence-specific DNA binding9.89E-04
22GO:0008083: growth factor activity1.16E-03
23GO:0042802: identical protein binding1.38E-03
24GO:0000156: phosphorelay response regulator activity2.85E-03
25GO:0004364: glutathione transferase activity5.45E-03
26GO:0004386: helicase activity9.34E-03
27GO:0044212: transcription regulatory region DNA binding1.08E-02
28GO:0030170: pyridoxal phosphate binding1.11E-02
29GO:0000287: magnesium ion binding1.74E-02
30GO:0009055: electron carrier activity2.85E-02
31GO:0004519: endonuclease activity2.87E-02
32GO:0016740: transferase activity4.69E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast7.72E-07
2GO:0009570: chloroplast stroma1.83E-06
3GO:0031011: Ino80 complex2.62E-04
4GO:0009536: plastid3.08E-04
5GO:0009941: chloroplast envelope4.71E-04
6GO:0010319: stromule3.09E-03
7GO:0009534: chloroplast thylakoid6.44E-03
8GO:0009706: chloroplast inner membrane8.79E-03
9GO:0005615: extracellular space1.40E-02
10GO:0046658: anchored component of plasma membrane1.58E-02
11GO:0031969: chloroplast membrane2.05E-02
12GO:0009535: chloroplast thylakoid membrane2.43E-02
13GO:0005743: mitochondrial inner membrane2.57E-02
14GO:0009579: thylakoid4.63E-02
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Gene type



Gene DE type