co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G47000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071482: cellular response to light stimulus	3.22E-06
2	GO:0046467: membrane lipid biosynthetic process	1.39E-05
3	GO:0000481: maturation of 5S rRNA	1.39E-05
4	GO:0042371: vitamin K biosynthetic process	1.39E-05
5	GO:0071461: cellular response to redox state	1.39E-05
6	GO:0034337: RNA folding	1.39E-05
7	GO:0080005: photosystem stoichiometry adjustment	3.65E-05
8	GO:0010541: acropetal auxin transport	3.65E-05
9	GO:0010160: formation of animal organ boundary	6.55E-05
10	GO:0043481: anthocyanin accumulation in tissues in response to UV light	9.94E-05
11	GO:2001141: regulation of RNA biosynthetic process	9.94E-05
12	GO:0015979: photosynthesis	1.04E-04
13	GO:0015995: chlorophyll biosynthetic process	1.04E-04
14	GO:2000122: negative regulation of stomatal complex development	1.37E-04
15	GO:0010037: response to carbon dioxide	1.37E-04
16	GO:0015976: carbon utilization	1.37E-04
17	GO:0043097: pyrimidine nucleoside salvage	1.78E-04
18	GO:0006206: pyrimidine nucleobase metabolic process	2.22E-04
19	GO:0060918: auxin transport	2.22E-04
20	GO:0009854: oxidative photosynthetic carbon pathway	2.68E-04
21	GO:0010019: chloroplast-nucleus signaling pathway	2.68E-04
22	GO:0009735: response to cytokinin	2.91E-04
23	GO:0009772: photosynthetic electron transport in photosystem II	3.15E-04
24	GO:0032508: DNA duplex unwinding	3.65E-04
25	GO:0016559: peroxisome fission	3.65E-04
26	GO:0009773: photosynthetic electron transport in photosystem I	6.34E-04
27	GO:0043085: positive regulation of catalytic activity	6.34E-04
28	GO:0006352: DNA-templated transcription, initiation	6.34E-04
29	GO:0018119: peptidyl-cysteine S-nitrosylation	6.34E-04
30	GO:0008361: regulation of cell size	6.93E-04
31	GO:0010020: chloroplast fission	8.13E-04
32	GO:0019253: reductive pentose-phosphate cycle	8.13E-04
33	GO:0010540: basipetal auxin transport	8.13E-04
34	GO:0009409: response to cold	1.15E-03
35	GO:0030245: cellulose catabolic process	1.20E-03
36	GO:0048443: stamen development	1.34E-03
37	GO:0042631: cellular response to water deprivation	1.49E-03
38	GO:0010118: stomatal movement	1.49E-03
39	GO:0009958: positive gravitropism	1.56E-03
40	GO:0015986: ATP synthesis coupled proton transport	1.64E-03
41	GO:0009639: response to red or far red light	2.04E-03
42	GO:0016311: dephosphorylation	2.66E-03
43	GO:0010218: response to far red light	2.94E-03
44	GO:0048527: lateral root development	3.03E-03
45	GO:0010119: regulation of stomatal movement	3.03E-03
46	GO:0009637: response to blue light	3.22E-03
47	GO:0009853: photorespiration	3.22E-03
48	GO:0034599: cellular response to oxidative stress	3.32E-03
49	GO:0009640: photomorphogenesis	3.83E-03
50	GO:0009926: auxin polar transport	3.83E-03
51	GO:0042742: defense response to bacterium	6.16E-03
52	GO:0009058: biosynthetic process	7.25E-03
53	GO:0007623: circadian rhythm	8.74E-03
54	GO:0009658: chloroplast organization	1.19E-02
55	GO:0009737: response to abscisic acid	1.31E-02
56	GO:0016310: phosphorylation	1.52E-02
57	GO:0009751: response to salicylic acid	1.80E-02
58	GO:0048364: root development	1.88E-02
59	GO:0009753: response to jasmonic acid	1.92E-02
60	GO:0006357: regulation of transcription from RNA polymerase II promoter	2.23E-02
61	GO:0009734: auxin-activated signaling pathway	2.33E-02
62	GO:0009416: response to light stimulus	2.74E-02
63	GO:0055085: transmembrane transport	3.25E-02
64	GO:0009414: response to water deprivation	4.46E-02
65	GO:0071555: cell wall organization	4.54E-02
66	GO:0030154: cell differentiation	4.82E-02
67	GO:0009733: response to auxin	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0008974: phosphoribulokinase activity	0.00E+00
2	GO:0008465: glycerate dehydrogenase activity	0.00E+00
3	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
4	GO:0046906: tetrapyrrole binding	1.39E-05
5	GO:0016851: magnesium chelatase activity	9.94E-05
6	GO:0016987: sigma factor activity	1.37E-04
7	GO:0001053: plastid sigma factor activity	1.37E-04
8	GO:0004849: uridine kinase activity	2.68E-04
9	GO:0019899: enzyme binding	3.15E-04
10	GO:0004565: beta-galactosidase activity	7.52E-04
11	GO:0010329: auxin efflux transmembrane transporter activity	7.52E-04
12	GO:0004089: carbonate dehydratase activity	7.52E-04
13	GO:0008266: poly(U) RNA binding	8.13E-04
14	GO:0008810: cellulase activity	1.27E-03
15	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.56E-03
16	GO:0016887: ATPase activity	2.68E-03
17	GO:0003993: acid phosphatase activity	3.32E-03
18	GO:0051287: NAD binding	4.36E-03
19	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.69E-03
20	GO:0008017: microtubule binding	9.02E-03
21	GO:0003729: mRNA binding	9.16E-03
22	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.03E-02
23	GO:0042802: identical protein binding	1.03E-02
24	GO:0016787: hydrolase activity	1.32E-02
25	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	1.57E-02
26	GO:0004722: protein serine/threonine phosphatase activity	1.68E-02
27	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	1.70E-02
28	GO:0003924: GTPase activity	1.82E-02
29	GO:0009055: electron carrier activity	1.92E-02
30	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.34E-02
31	GO:0030246: carbohydrate binding	3.39E-02
32	GO:0005507: copper ion binding	3.53E-02
33	GO:0005516: calmodulin binding	3.67E-02
34	GO:0005525: GTP binding	3.91E-02
35	GO:0005515: protein binding	4.11E-02
36	GO:0044212: transcription regulatory region DNA binding	4.54E-02
37	GO:0008270: zinc ion binding	4.60E-02
38	GO:0005215: transporter activity	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.45E-08
2	GO:0009535: chloroplast thylakoid membrane	3.12E-05
3	GO:0010007: magnesium chelatase complex	6.55E-05
4	GO:0010319: stromule	7.58E-05
5	GO:0009941: chloroplast envelope	1.54E-04
6	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.22E-04
7	GO:0005777: peroxisome	3.91E-04
8	GO:0009579: thylakoid	4.12E-04
9	GO:0032040: small-subunit processome	6.93E-04
10	GO:0009522: photosystem I	1.64E-03
11	GO:0009707: chloroplast outer membrane	2.75E-03
12	GO:0031977: thylakoid lumen	3.63E-03
13	GO:0048046: apoplast	3.99E-03
14	GO:0010287: plastoglobule	6.73E-03
15	GO:0009543: chloroplast thylakoid lumen	6.99E-03
16	GO:0009570: chloroplast stroma	8.43E-03
17	GO:0031969: chloroplast membrane	1.38E-02
18	GO:0005618: cell wall	2.45E-02
19	GO:0009534: chloroplast thylakoid	3.14E-02
20	GO:0005773: vacuole	3.29E-02