GO Enrichment Analysis of Co-expressed Genes with
AT3G46970
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 2 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 3 | GO:0046471: phosphatidylglycerol metabolic process | 0.00E+00 |
| 4 | GO:0033614: chloroplast proton-transporting ATP synthase complex assembly | 0.00E+00 |
| 5 | GO:0009773: photosynthetic electron transport in photosystem I | 1.01E-05 |
| 6 | GO:0006094: gluconeogenesis | 1.60E-05 |
| 7 | GO:0015995: chlorophyll biosynthetic process | 1.77E-05 |
| 8 | GO:0015994: chlorophyll metabolic process | 2.35E-05 |
| 9 | GO:0055114: oxidation-reduction process | 2.39E-05 |
| 10 | GO:0006636: unsaturated fatty acid biosynthetic process | 2.87E-05 |
| 11 | GO:0015979: photosynthesis | 3.62E-05 |
| 12 | GO:1901259: chloroplast rRNA processing | 7.89E-05 |
| 13 | GO:0032544: plastid translation | 1.69E-04 |
| 14 | GO:0010028: xanthophyll cycle | 1.75E-04 |
| 15 | GO:0034337: RNA folding | 1.75E-04 |
| 16 | GO:0000023: maltose metabolic process | 1.75E-04 |
| 17 | GO:0000025: maltose catabolic process | 1.75E-04 |
| 18 | GO:0009090: homoserine biosynthetic process | 1.75E-04 |
| 19 | GO:0006098: pentose-phosphate shunt | 2.06E-04 |
| 20 | GO:0005982: starch metabolic process | 2.46E-04 |
| 21 | GO:0005983: starch catabolic process | 3.86E-04 |
| 22 | GO:0005976: polysaccharide metabolic process | 3.96E-04 |
| 23 | GO:0010353: response to trehalose | 3.96E-04 |
| 24 | GO:0016122: xanthophyll metabolic process | 3.96E-04 |
| 25 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 3.96E-04 |
| 26 | GO:0006898: receptor-mediated endocytosis | 3.96E-04 |
| 27 | GO:0010207: photosystem II assembly | 4.96E-04 |
| 28 | GO:0010114: response to red light | 6.19E-04 |
| 29 | GO:0006518: peptide metabolic process | 6.47E-04 |
| 30 | GO:0006000: fructose metabolic process | 6.47E-04 |
| 31 | GO:0009768: photosynthesis, light harvesting in photosystem I | 7.52E-04 |
| 32 | GO:0061077: chaperone-mediated protein folding | 8.23E-04 |
| 33 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 9.23E-04 |
| 34 | GO:0009067: aspartate family amino acid biosynthetic process | 9.23E-04 |
| 35 | GO:1902358: sulfate transmembrane transport | 9.23E-04 |
| 36 | GO:0006020: inositol metabolic process | 9.23E-04 |
| 37 | GO:0006021: inositol biosynthetic process | 1.22E-03 |
| 38 | GO:0071483: cellular response to blue light | 1.22E-03 |
| 39 | GO:0010021: amylopectin biosynthetic process | 1.22E-03 |
| 40 | GO:0045727: positive regulation of translation | 1.22E-03 |
| 41 | GO:0019252: starch biosynthetic process | 1.52E-03 |
| 42 | GO:0009904: chloroplast accumulation movement | 1.56E-03 |
| 43 | GO:0016120: carotene biosynthetic process | 1.56E-03 |
| 44 | GO:0006656: phosphatidylcholine biosynthetic process | 1.56E-03 |
| 45 | GO:0010190: cytochrome b6f complex assembly | 1.91E-03 |
| 46 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 1.91E-03 |
| 47 | GO:0042549: photosystem II stabilization | 1.91E-03 |
| 48 | GO:0046855: inositol phosphate dephosphorylation | 1.91E-03 |
| 49 | GO:1902456: regulation of stomatal opening | 1.91E-03 |
| 50 | GO:0032259: methylation | 2.05E-03 |
| 51 | GO:0009903: chloroplast avoidance movement | 2.30E-03 |
| 52 | GO:0009854: oxidative photosynthetic carbon pathway | 2.30E-03 |
| 53 | GO:0009088: threonine biosynthetic process | 2.30E-03 |
| 54 | GO:0009955: adaxial/abaxial pattern specification | 2.30E-03 |
| 55 | GO:0009610: response to symbiotic fungus | 2.70E-03 |
| 56 | GO:0009772: photosynthetic electron transport in photosystem II | 2.70E-03 |
| 57 | GO:0010196: nonphotochemical quenching | 2.70E-03 |
| 58 | GO:0008272: sulfate transport | 2.70E-03 |
| 59 | GO:0005978: glycogen biosynthetic process | 3.13E-03 |
| 60 | GO:0009642: response to light intensity | 3.13E-03 |
| 61 | GO:0009631: cold acclimation | 3.51E-03 |
| 62 | GO:0006002: fructose 6-phosphate metabolic process | 3.58E-03 |
| 63 | GO:0015996: chlorophyll catabolic process | 3.58E-03 |
| 64 | GO:0009657: plastid organization | 3.58E-03 |
| 65 | GO:0010206: photosystem II repair | 4.05E-03 |
| 66 | GO:0006754: ATP biosynthetic process | 4.05E-03 |
| 67 | GO:0009821: alkaloid biosynthetic process | 4.05E-03 |
| 68 | GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | 4.54E-03 |
| 69 | GO:0010205: photoinhibition | 4.54E-03 |
| 70 | GO:0009086: methionine biosynthetic process | 4.54E-03 |
| 71 | GO:0009641: shade avoidance | 5.05E-03 |
| 72 | GO:0043085: positive regulation of catalytic activity | 5.58E-03 |
| 73 | GO:0000272: polysaccharide catabolic process | 5.58E-03 |
| 74 | GO:0018119: peptidyl-cysteine S-nitrosylation | 5.58E-03 |
| 75 | GO:0009089: lysine biosynthetic process via diaminopimelate | 5.58E-03 |
| 76 | GO:0006790: sulfur compound metabolic process | 6.13E-03 |
| 77 | GO:0006364: rRNA processing | 6.66E-03 |
| 78 | GO:0018107: peptidyl-threonine phosphorylation | 6.70E-03 |
| 79 | GO:0005986: sucrose biosynthetic process | 6.70E-03 |
| 80 | GO:0009409: response to cold | 7.11E-03 |
| 81 | GO:0007015: actin filament organization | 7.28E-03 |
| 82 | GO:0010223: secondary shoot formation | 7.28E-03 |
| 83 | GO:0009266: response to temperature stimulus | 7.28E-03 |
| 84 | GO:0019253: reductive pentose-phosphate cycle | 7.28E-03 |
| 85 | GO:0006096: glycolytic process | 7.88E-03 |
| 86 | GO:0046854: phosphatidylinositol phosphorylation | 7.89E-03 |
| 87 | GO:0005985: sucrose metabolic process | 7.89E-03 |
| 88 | GO:0006810: transport | 8.20E-03 |
| 89 | GO:0030433: ubiquitin-dependent ERAD pathway | 1.12E-02 |
| 90 | GO:0016226: iron-sulfur cluster assembly | 1.12E-02 |
| 91 | GO:0016117: carotenoid biosynthetic process | 1.33E-02 |
| 92 | GO:0070417: cellular response to cold | 1.33E-02 |
| 93 | GO:0000413: protein peptidyl-prolyl isomerization | 1.41E-02 |
| 94 | GO:0042631: cellular response to water deprivation | 1.41E-02 |
| 95 | GO:0006662: glycerol ether metabolic process | 1.49E-02 |
| 96 | GO:0009741: response to brassinosteroid | 1.49E-02 |
| 97 | GO:0006633: fatty acid biosynthetic process | 1.50E-02 |
| 98 | GO:0015986: ATP synthesis coupled proton transport | 1.56E-02 |
| 99 | GO:0032502: developmental process | 1.81E-02 |
| 100 | GO:0009630: gravitropism | 1.81E-02 |
| 101 | GO:0016311: dephosphorylation | 2.61E-02 |
| 102 | GO:0018298: protein-chromophore linkage | 2.71E-02 |
| 103 | GO:0009813: flavonoid biosynthetic process | 2.80E-02 |
| 104 | GO:0010218: response to far red light | 2.90E-02 |
| 105 | GO:0046686: response to cadmium ion | 2.94E-02 |
| 106 | GO:0007568: aging | 3.00E-02 |
| 107 | GO:0080167: response to karrikin | 3.16E-02 |
| 108 | GO:0009637: response to blue light | 3.20E-02 |
| 109 | GO:0009853: photorespiration | 3.20E-02 |
| 110 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.27E-02 |
| 111 | GO:0034599: cellular response to oxidative stress | 3.31E-02 |
| 112 | GO:0006631: fatty acid metabolic process | 3.62E-02 |
| 113 | GO:0045454: cell redox homeostasis | 3.78E-02 |
| 114 | GO:0000209: protein polyubiquitination | 3.95E-02 |
| 115 | GO:0006629: lipid metabolic process | 4.65E-02 |
| 116 | GO:0009408: response to heat | 4.65E-02 |
| 117 | GO:0010224: response to UV-B | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 2 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 3 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 4 | GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity | 0.00E+00 |
| 5 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 6 | GO:0016166: phytoene dehydrogenase activity | 0.00E+00 |
| 7 | GO:0052667: phosphomethylethanolamine N-methyltransferase activity | 0.00E+00 |
| 8 | GO:0010297: heteropolysaccharide binding | 1.48E-06 |
| 9 | GO:0004332: fructose-bisphosphate aldolase activity | 5.65E-05 |
| 10 | GO:0034256: chlorophyll(ide) b reductase activity | 1.75E-04 |
| 11 | GO:0045486: naringenin 3-dioxygenase activity | 1.75E-04 |
| 12 | GO:0035671: enone reductase activity | 1.75E-04 |
| 13 | GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity | 1.75E-04 |
| 14 | GO:0050521: alpha-glucan, water dikinase activity | 1.75E-04 |
| 15 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 1.75E-04 |
| 16 | GO:0045485: omega-6 fatty acid desaturase activity | 1.75E-04 |
| 17 | GO:0004134: 4-alpha-glucanotransferase activity | 1.75E-04 |
| 18 | GO:0019172: glyoxalase III activity | 3.96E-04 |
| 19 | GO:0000234: phosphoethanolamine N-methyltransferase activity | 3.96E-04 |
| 20 | GO:0047746: chlorophyllase activity | 3.96E-04 |
| 21 | GO:0042389: omega-3 fatty acid desaturase activity | 3.96E-04 |
| 22 | GO:0052832: inositol monophosphate 3-phosphatase activity | 3.96E-04 |
| 23 | GO:0033201: alpha-1,4-glucan synthase activity | 3.96E-04 |
| 24 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 3.96E-04 |
| 25 | GO:0008934: inositol monophosphate 1-phosphatase activity | 3.96E-04 |
| 26 | GO:0052833: inositol monophosphate 4-phosphatase activity | 3.96E-04 |
| 27 | GO:0004412: homoserine dehydrogenase activity | 3.96E-04 |
| 28 | GO:0008967: phosphoglycolate phosphatase activity | 3.96E-04 |
| 29 | GO:0018708: thiol S-methyltransferase activity | 3.96E-04 |
| 30 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 3.96E-04 |
| 31 | GO:0016491: oxidoreductase activity | 5.26E-04 |
| 32 | GO:0031409: pigment binding | 6.18E-04 |
| 33 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 6.47E-04 |
| 34 | GO:0043169: cation binding | 6.47E-04 |
| 35 | GO:0004373: glycogen (starch) synthase activity | 6.47E-04 |
| 36 | GO:0005528: FK506 binding | 6.82E-04 |
| 37 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.51E-04 |
| 38 | GO:0004072: aspartate kinase activity | 9.23E-04 |
| 39 | GO:0019201: nucleotide kinase activity | 9.23E-04 |
| 40 | GO:0016851: magnesium chelatase activity | 9.23E-04 |
| 41 | GO:0009011: starch synthase activity | 1.22E-03 |
| 42 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.22E-03 |
| 43 | GO:0048038: quinone binding | 1.63E-03 |
| 44 | GO:0019843: rRNA binding | 1.84E-03 |
| 45 | GO:0004462: lactoylglutathione lyase activity | 1.91E-03 |
| 46 | GO:0008200: ion channel inhibitor activity | 1.91E-03 |
| 47 | GO:2001070: starch binding | 1.91E-03 |
| 48 | GO:0004602: glutathione peroxidase activity | 2.30E-03 |
| 49 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.30E-03 |
| 50 | GO:0004017: adenylate kinase activity | 2.30E-03 |
| 51 | GO:0016168: chlorophyll binding | 2.47E-03 |
| 52 | GO:0008271: secondary active sulfate transmembrane transporter activity | 3.58E-03 |
| 53 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 3.58E-03 |
| 54 | GO:0003993: acid phosphatase activity | 4.02E-03 |
| 55 | GO:0016844: strictosidine synthase activity | 4.54E-03 |
| 56 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 4.54E-03 |
| 57 | GO:0008168: methyltransferase activity | 4.60E-03 |
| 58 | GO:0030234: enzyme regulator activity | 5.05E-03 |
| 59 | GO:0008047: enzyme activator activity | 5.05E-03 |
| 60 | GO:0044183: protein binding involved in protein folding | 5.58E-03 |
| 61 | GO:0047372: acylglycerol lipase activity | 5.58E-03 |
| 62 | GO:0015116: sulfate transmembrane transporter activity | 6.13E-03 |
| 63 | GO:0004022: alcohol dehydrogenase (NAD) activity | 6.70E-03 |
| 64 | GO:0031072: heat shock protein binding | 6.70E-03 |
| 65 | GO:0004565: beta-galactosidase activity | 6.70E-03 |
| 66 | GO:0051536: iron-sulfur cluster binding | 9.15E-03 |
| 67 | GO:0031418: L-ascorbic acid binding | 9.15E-03 |
| 68 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.22E-02 |
| 69 | GO:0003727: single-stranded RNA binding | 1.26E-02 |
| 70 | GO:0047134: protein-disulfide reductase activity | 1.33E-02 |
| 71 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.49E-02 |
| 72 | GO:0050662: coenzyme binding | 1.56E-02 |
| 73 | GO:0004791: thioredoxin-disulfide reductase activity | 1.56E-02 |
| 74 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.89E-02 |
| 75 | GO:0016597: amino acid binding | 2.15E-02 |
| 76 | GO:0004222: metalloendopeptidase activity | 2.90E-02 |
| 77 | GO:0003746: translation elongation factor activity | 3.20E-02 |
| 78 | GO:0050661: NADP binding | 3.52E-02 |
| 79 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.06E-02 |
| 80 | GO:0043621: protein self-association | 4.06E-02 |
| 81 | GO:0015293: symporter activity | 4.17E-02 |
| 82 | GO:0016787: hydrolase activity | 4.65E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.12E-39 |
| 2 | GO:0009534: chloroplast thylakoid | 1.31E-31 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 7.68E-27 |
| 4 | GO:0009941: chloroplast envelope | 1.04E-16 |
| 5 | GO:0009570: chloroplast stroma | 3.84E-14 |
| 6 | GO:0031977: thylakoid lumen | 8.05E-13 |
| 7 | GO:0009579: thylakoid | 1.26E-12 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 2.15E-12 |
| 9 | GO:0010287: plastoglobule | 1.30E-06 |
| 10 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 4.28E-06 |
| 11 | GO:0031969: chloroplast membrane | 2.55E-05 |
| 12 | GO:0042651: thylakoid membrane | 4.00E-05 |
| 13 | GO:0009501: amyloplast | 1.35E-04 |
| 14 | GO:0010319: stromule | 1.96E-04 |
| 15 | GO:0031357: integral component of chloroplast inner membrane | 3.96E-04 |
| 16 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 3.96E-04 |
| 17 | GO:0030076: light-harvesting complex | 5.54E-04 |
| 18 | GO:0010007: magnesium chelatase complex | 6.47E-04 |
| 19 | GO:0009509: chromoplast | 6.47E-04 |
| 20 | GO:0009654: photosystem II oxygen evolving complex | 7.52E-04 |
| 21 | GO:0009544: chloroplast ATP synthase complex | 1.22E-03 |
| 22 | GO:0019898: extrinsic component of membrane | 1.52E-03 |
| 23 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.91E-03 |
| 24 | GO:0031982: vesicle | 3.13E-03 |
| 25 | GO:0005763: mitochondrial small ribosomal subunit | 4.05E-03 |
| 26 | GO:0048046: apoplast | 4.84E-03 |
| 27 | GO:0032040: small-subunit processome | 6.13E-03 |
| 28 | GO:0030095: chloroplast photosystem II | 7.28E-03 |
| 29 | GO:0009706: chloroplast inner membrane | 9.49E-03 |
| 30 | GO:0015935: small ribosomal subunit | 1.05E-02 |
| 31 | GO:0009522: photosystem I | 1.56E-02 |