co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G46580

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0044154: histone H3-K14 acetylation	0.00E+00
2	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
3	GO:0036172: thiamine salvage	0.00E+00
4	GO:0045176: apical protein localization	0.00E+00
5	GO:0046460: neutral lipid biosynthetic process	0.00E+00
6	GO:0043972: histone H3-K23 acetylation	0.00E+00
7	GO:0009451: RNA modification	1.14E-04
8	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.20E-04
9	GO:0051171: regulation of nitrogen compound metabolic process	2.20E-04
10	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.20E-04
11	GO:0043971: histone H3-K18 acetylation	2.20E-04
12	GO:0019478: D-amino acid catabolic process	2.20E-04
13	GO:0007389: pattern specification process	2.36E-04
14	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.90E-04
15	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	4.90E-04
16	GO:0010540: basipetal auxin transport	6.76E-04
17	GO:0080188: RNA-directed DNA methylation	7.56E-04
18	GO:0006013: mannose metabolic process	7.98E-04
19	GO:0009926: auxin polar transport	9.24E-04
20	GO:0009800: cinnamic acid biosynthetic process	1.14E-03
21	GO:0010306: rhamnogalacturonan II biosynthetic process	1.14E-03
22	GO:0010255: glucose mediated signaling pathway	1.14E-03
23	GO:0009956: radial pattern formation	1.51E-03
24	GO:0015846: polyamine transport	1.51E-03
25	GO:0048868: pollen tube development	1.81E-03
26	GO:0031365: N-terminal protein amino acid modification	1.93E-03
27	GO:0009229: thiamine diphosphate biosynthetic process	1.93E-03
28	GO:0010158: abaxial cell fate specification	1.93E-03
29	GO:0016558: protein import into peroxisome matrix	1.93E-03
30	GO:0002229: defense response to oomycetes	2.23E-03
31	GO:0048827: phyllome development	2.38E-03
32	GO:0006559: L-phenylalanine catabolic process	2.38E-03
33	GO:0009228: thiamine biosynthetic process	2.38E-03
34	GO:0006655: phosphatidylglycerol biosynthetic process	2.38E-03
35	GO:0010252: auxin homeostasis	2.70E-03
36	GO:0009088: threonine biosynthetic process	2.86E-03
37	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.86E-03
38	GO:0034389: lipid particle organization	2.86E-03
39	GO:0009942: longitudinal axis specification	2.86E-03
40	GO:0009610: response to symbiotic fungus	3.36E-03
41	GO:0010050: vegetative phase change	3.36E-03
42	GO:0034968: histone lysine methylation	3.90E-03
43	GO:0006353: DNA-templated transcription, termination	3.90E-03
44	GO:0009850: auxin metabolic process	3.90E-03
45	GO:0044030: regulation of DNA methylation	4.47E-03
46	GO:0009657: plastid organization	4.47E-03
47	GO:0000373: Group II intron splicing	5.06E-03
48	GO:0019432: triglyceride biosynthetic process	5.06E-03
49	GO:0008202: steroid metabolic process	5.68E-03
50	GO:0010018: far-red light signaling pathway	5.68E-03
51	GO:0010380: regulation of chlorophyll biosynthetic process	5.68E-03
52	GO:0016571: histone methylation	5.68E-03
53	GO:0009734: auxin-activated signaling pathway	6.03E-03
54	GO:0016485: protein processing	6.98E-03
55	GO:0006415: translational termination	6.98E-03
56	GO:0016024: CDP-diacylglycerol biosynthetic process	7.68E-03
57	GO:0010582: floral meristem determinacy	7.68E-03
58	GO:0010229: inflorescence development	8.39E-03
59	GO:0010020: chloroplast fission	9.13E-03
60	GO:0009933: meristem structural organization	9.13E-03
61	GO:0009825: multidimensional cell growth	9.90E-03
62	GO:0006863: purine nucleobase transport	1.07E-02
63	GO:0006071: glycerol metabolic process	1.07E-02
64	GO:0042753: positive regulation of circadian rhythm	1.07E-02
65	GO:0010187: negative regulation of seed germination	1.15E-02
66	GO:0006306: DNA methylation	1.32E-02
67	GO:0016226: iron-sulfur cluster assembly	1.40E-02
68	GO:0048653: anther development	1.77E-02
69	GO:0010305: leaf vascular tissue pattern formation	1.87E-02
70	GO:0008654: phospholipid biosynthetic process	2.07E-02
71	GO:0048825: cotyledon development	2.07E-02
72	GO:0006635: fatty acid beta-oxidation	2.17E-02
73	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.17E-02
74	GO:0007264: small GTPase mediated signal transduction	2.28E-02
75	GO:0010583: response to cyclopentenone	2.28E-02
76	GO:0031047: gene silencing by RNA	2.28E-02
77	GO:0007623: circadian rhythm	2.28E-02
78	GO:0009639: response to red or far red light	2.49E-02
79	GO:0016126: sterol biosynthetic process	2.82E-02
80	GO:0009911: positive regulation of flower development	2.82E-02
81	GO:0009793: embryo development ending in seed dormancy	3.11E-02
82	GO:0009416: response to light stimulus	3.23E-02
83	GO:0009658: chloroplast organization	3.53E-02
84	GO:0000160: phosphorelay signal transduction system	3.53E-02
85	GO:0007568: aging	3.78E-02
86	GO:0009910: negative regulation of flower development	3.78E-02
87	GO:0009853: photorespiration	4.03E-02
88	GO:0055085: transmembrane transport	4.33E-02
89	GO:0080167: response to karrikin	4.36E-02

Rank	GO Term	Adjusted P value
1	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
2	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
3	GO:0019808: polyamine binding	0.00E+00
4	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	2.20E-04
5	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.20E-04
6	GO:0004795: threonine synthase activity	2.20E-04
7	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	2.20E-04
8	GO:0009672: auxin:proton symporter activity	3.41E-04
9	GO:0004047: aminomethyltransferase activity	4.90E-04
10	GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity	4.90E-04
11	GO:0008805: carbon-monoxide oxygenase activity	4.90E-04
12	GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity	4.90E-04
13	GO:0010329: auxin efflux transmembrane transporter activity	6.01E-04
14	GO:0010429: methyl-CpNpN binding	7.98E-04
15	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	7.98E-04
16	GO:0045548: phenylalanine ammonia-lyase activity	7.98E-04
17	GO:0010428: methyl-CpNpG binding	7.98E-04
18	GO:0000254: C-4 methylsterol oxidase activity	1.14E-03
19	GO:0010385: double-stranded methylated DNA binding	1.51E-03
20	GO:0004605: phosphatidate cytidylyltransferase activity	2.38E-03
21	GO:0004559: alpha-mannosidase activity	2.86E-03
22	GO:0004144: diacylglycerol O-acyltransferase activity	2.86E-03
23	GO:0008235: metalloexopeptidase activity	3.36E-03
24	GO:0004519: endonuclease activity	4.07E-03
25	GO:0008142: oxysterol binding	4.47E-03
26	GO:0003747: translation release factor activity	5.06E-03
27	GO:0042393: histone binding	6.04E-03
28	GO:0015020: glucuronosyltransferase activity	6.32E-03
29	GO:0004713: protein tyrosine kinase activity	6.32E-03
30	GO:0008327: methyl-CpG binding	6.98E-03
31	GO:0004177: aminopeptidase activity	6.98E-03
32	GO:0009982: pseudouridine synthase activity	8.39E-03
33	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.13E-03
34	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.20E-02
35	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.20E-02
36	GO:0005345: purine nucleobase transmembrane transporter activity	1.23E-02
37	GO:0004176: ATP-dependent peptidase activity	1.32E-02
38	GO:0003924: GTPase activity	1.57E-02
39	GO:0018024: histone-lysine N-methyltransferase activity	1.68E-02
40	GO:0004402: histone acetyltransferase activity	1.77E-02
41	GO:0001085: RNA polymerase II transcription factor binding	1.87E-02
42	GO:0019901: protein kinase binding	2.07E-02
43	GO:0000156: phosphorelay response regulator activity	2.38E-02
44	GO:0008194: UDP-glycosyltransferase activity	2.55E-02
45	GO:0008237: metallopeptidase activity	2.60E-02
46	GO:0004806: triglyceride lipase activity	3.17E-02
47	GO:0046982: protein heterodimerization activity	3.46E-02
48	GO:0016788: hydrolase activity, acting on ester bonds	3.59E-02
49	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.66E-02
50	GO:0004222: metalloendopeptidase activity	3.66E-02
51	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.78E-02
52	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.78E-02
53	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.30E-02
54	GO:0004674: protein serine/threonine kinase activity	4.52E-02
55	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.54E-02
56	GO:0030246: carbohydrate binding	4.65E-02
57	GO:0004185: serine-type carboxypeptidase activity	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0035452: extrinsic component of plastid membrane	0.00E+00
2	GO:0042597: periplasmic space	0.00E+00
3	GO:0009507: chloroplast	6.35E-05
4	GO:0009505: plant-type cell wall	9.71E-04
5	GO:0005811: lipid particle	4.47E-03
6	GO:0016602: CCAAT-binding factor complex	8.39E-03
7	GO:0000419: DNA-directed RNA polymerase V complex	1.07E-02
8	GO:0045271: respiratory chain complex I	1.23E-02
9	GO:0000775: chromosome, centromeric region	1.40E-02
10	GO:0043231: intracellular membrane-bounded organelle	1.78E-02
11	GO:0005770: late endosome	1.87E-02
12	GO:0005667: transcription factor complex	3.05E-02
13	GO:0009707: chloroplast outer membrane	3.41E-02
14	GO:0005819: spindle	4.30E-02
15	GO:0005789: endoplasmic reticulum membrane	4.57E-02