Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G46550

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0008064: regulation of actin polymerization or depolymerization0.00E+00
2GO:0051493: regulation of cytoskeleton organization0.00E+00
3GO:0044154: histone H3-K14 acetylation0.00E+00
4GO:1901698: response to nitrogen compound0.00E+00
5GO:0031116: positive regulation of microtubule polymerization0.00E+00
6GO:0043972: histone H3-K23 acetylation0.00E+00
7GO:0046396: D-galacturonate metabolic process0.00E+00
8GO:1990542: mitochondrial transmembrane transport6.42E-05
9GO:0051171: regulation of nitrogen compound metabolic process6.42E-05
10GO:1902265: abscisic acid homeostasis6.42E-05
11GO:0043971: histone H3-K18 acetylation6.42E-05
12GO:1901135: carbohydrate derivative metabolic process6.42E-05
13GO:0010275: NAD(P)H dehydrogenase complex assembly1.55E-04
14GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation1.55E-04
15GO:0031022: nuclear migration along microfilament2.63E-04
16GO:0006013: mannose metabolic process2.63E-04
17GO:0071705: nitrogen compound transport2.63E-04
18GO:0009150: purine ribonucleotide metabolic process2.63E-04
19GO:0001578: microtubule bundle formation2.63E-04
20GO:0006166: purine ribonucleoside salvage3.82E-04
21GO:0010255: glucose mediated signaling pathway3.82E-04
22GO:0006168: adenine salvage3.82E-04
23GO:0007623: circadian rhythm5.04E-04
24GO:0051322: anaphase5.10E-04
25GO:0071249: cellular response to nitrate5.10E-04
26GO:0007020: microtubule nucleation5.10E-04
27GO:0009902: chloroplast relocation5.10E-04
28GO:0044209: AMP salvage6.45E-04
29GO:0046785: microtubule polymerization6.45E-04
30GO:0006564: L-serine biosynthetic process6.45E-04
31GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity9.40E-04
32GO:0046835: carbohydrate phosphorylation9.40E-04
33GO:0009903: chloroplast avoidance movement9.40E-04
34GO:0048528: post-embryonic root development1.10E-03
35GO:0010928: regulation of auxin mediated signaling pathway1.26E-03
36GO:0009787: regulation of abscisic acid-activated signaling pathway1.26E-03
37GO:0009704: de-etiolation1.26E-03
38GO:0006997: nucleus organization1.44E-03
39GO:0007389: pattern specification process1.44E-03
40GO:0044030: regulation of DNA methylation1.44E-03
41GO:0009664: plant-type cell wall organization1.62E-03
42GO:0048354: mucilage biosynthetic process involved in seed coat development1.81E-03
43GO:0010380: regulation of chlorophyll biosynthetic process1.81E-03
44GO:0006949: syncytium formation2.01E-03
45GO:0010192: mucilage biosynthetic process2.01E-03
46GO:0006790: sulfur compound metabolic process2.42E-03
47GO:0015706: nitrate transport2.42E-03
48GO:0010105: negative regulation of ethylene-activated signaling pathway2.42E-03
49GO:0030048: actin filament-based movement2.64E-03
50GO:0080188: RNA-directed DNA methylation3.09E-03
51GO:0010167: response to nitrate3.09E-03
52GO:0010187: negative regulation of seed germination3.57E-03
53GO:0043622: cortical microtubule organization3.82E-03
54GO:0080092: regulation of pollen tube growth4.34E-03
55GO:0006012: galactose metabolic process4.60E-03
56GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.60E-03
57GO:0008360: regulation of cell shape5.72E-03
58GO:0009958: positive gravitropism5.72E-03
59GO:0009826: unidimensional cell growth6.24E-03
60GO:0071554: cell wall organization or biogenesis6.61E-03
61GO:0007264: small GTPase mediated signal transduction6.92E-03
62GO:0009828: plant-type cell wall loosening7.55E-03
63GO:0010252: auxin homeostasis7.55E-03
64GO:0000910: cytokinesis8.21E-03
65GO:0016126: sterol biosynthetic process8.54E-03
66GO:0010029: regulation of seed germination8.88E-03
67GO:0030244: cellulose biosynthetic process1.03E-02
68GO:0006811: ion transport1.10E-02
69GO:0009910: negative regulation of flower development1.14E-02
70GO:0009637: response to blue light1.22E-02
71GO:0009853: photorespiration1.22E-02
72GO:0048364: root development1.24E-02
73GO:0006468: protein phosphorylation1.33E-02
74GO:0009926: auxin polar transport1.45E-02
75GO:0051707: response to other organism1.45E-02
76GO:0008283: cell proliferation1.45E-02
77GO:0005975: carbohydrate metabolic process1.58E-02
78GO:0009734: auxin-activated signaling pathway1.68E-02
79GO:0006812: cation transport1.71E-02
80GO:0006417: regulation of translation1.93E-02
81GO:0009740: gibberellic acid mediated signaling pathway2.21E-02
82GO:0051726: regulation of cell cycle2.41E-02
83GO:0009790: embryo development3.02E-02
84GO:0010228: vegetative to reproductive phase transition of meristem3.52E-02
85GO:0009739: response to gibberellin3.69E-02
86GO:0007166: cell surface receptor signaling pathway3.75E-02
87GO:0010468: regulation of gene expression3.86E-02
88GO:0009658: chloroplast organization4.65E-02
89GO:0006970: response to osmotic stress4.90E-02
90GO:0009860: pollen tube growth4.90E-02
RankGO TermAdjusted P value
1GO:0047912: galacturonokinase activity0.00E+00
2GO:0097367: carbohydrate derivative binding6.42E-05
3GO:0005089: Rho guanyl-nucleotide exchange factor activity7.90E-05
4GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity1.55E-04
5GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity1.55E-04
6GO:0004647: phosphoserine phosphatase activity2.63E-04
7GO:0047627: adenylylsulfatase activity3.82E-04
8GO:0017077: oxidative phosphorylation uncoupler activity3.82E-04
9GO:0000254: C-4 methylsterol oxidase activity3.82E-04
10GO:0003999: adenine phosphoribosyltransferase activity3.82E-04
11GO:0004335: galactokinase activity5.10E-04
12GO:0080032: methyl jasmonate esterase activity5.10E-04
13GO:0010385: double-stranded methylated DNA binding5.10E-04
14GO:0004559: alpha-mannosidase activity9.40E-04
15GO:0015491: cation:cation antiporter activity1.26E-03
16GO:0009672: auxin:proton symporter activity1.81E-03
17GO:0010329: auxin efflux transmembrane transporter activity2.64E-03
18GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.87E-03
19GO:0004176: ATP-dependent peptidase activity4.08E-03
20GO:0004402: histone acetyltransferase activity5.43E-03
21GO:0030246: carbohydrate binding5.52E-03
22GO:0008080: N-acetyltransferase activity5.72E-03
23GO:0001085: RNA polymerase II transcription factor binding5.72E-03
24GO:0016853: isomerase activity6.01E-03
25GO:0004674: protein serine/threonine kinase activity6.06E-03
26GO:0019901: protein kinase binding6.31E-03
27GO:0016788: hydrolase activity, acting on ester bonds6.60E-03
28GO:0016413: O-acetyltransferase activity8.21E-03
29GO:0004721: phosphoprotein phosphatase activity9.57E-03
30GO:0004222: metalloendopeptidase activity1.10E-02
31GO:0004693: cyclin-dependent protein serine/threonine kinase activity1.10E-02
32GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding1.14E-02
33GO:0016757: transferase activity, transferring glycosyl groups1.21E-02
34GO:0042393: histone binding1.33E-02
35GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.79E-02
36GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding2.97E-02
37GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.24E-02
38GO:0008017: microtubule binding3.52E-02
39GO:0003682: chromatin binding4.83E-02
RankGO TermAdjusted P value
1GO:0070971: endoplasmic reticulum exit site0.00E+00
2GO:0009505: plant-type cell wall5.54E-04
3GO:0072686: mitotic spindle6.45E-04
4GO:0010005: cortical microtubule, transverse to long axis9.40E-04
5GO:0055028: cortical microtubule2.01E-03
6GO:0016324: apical plasma membrane2.01E-03
7GO:0005938: cell cortex2.64E-03
8GO:0009574: preprophase band2.64E-03
9GO:0045271: respiratory chain complex I3.82E-03
10GO:0009507: chloroplast4.33E-03
11GO:0019898: extrinsic component of membrane6.31E-03
12GO:0031965: nuclear membrane6.31E-03
13GO:0005802: trans-Golgi network6.88E-03
14GO:0005794: Golgi apparatus7.40E-03
15GO:0005768: endosome8.11E-03
16GO:0005667: transcription factor complex9.22E-03
17GO:0009707: chloroplast outer membrane1.03E-02
18GO:0005819: spindle1.29E-02
19GO:0005856: cytoskeleton1.58E-02
20GO:0005789: endoplasmic reticulum membrane1.59E-02
21GO:0031966: mitochondrial membrane1.71E-02
22GO:0005635: nuclear envelope1.89E-02
23GO:0005747: mitochondrial respiratory chain complex I2.07E-02
24GO:0005623: cell2.76E-02
25GO:0009524: phragmoplast2.81E-02
26GO:0016021: integral component of membrane3.11E-02
27GO:0046658: anchored component of plasma membrane4.16E-02
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Gene type



Gene DE type