Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G46370

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0016118: carotenoid catabolic process0.00E+00
2GO:0046471: phosphatidylglycerol metabolic process0.00E+00
3GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
4GO:1905157: positive regulation of photosynthesis0.00E+00
5GO:0015843: methylammonium transport0.00E+00
6GO:1902171: regulation of tocopherol cyclase activity0.00E+00
7GO:1901918: negative regulation of exoribonuclease activity0.00E+00
8GO:0033494: ferulate metabolic process0.00E+00
9GO:0009773: photosynthetic electron transport in photosystem I1.10E-06
10GO:0009657: plastid organization1.54E-05
11GO:0015994: chlorophyll metabolic process7.23E-05
12GO:0010207: photosystem II assembly8.72E-05
13GO:0015995: chlorophyll biosynthetic process1.10E-04
14GO:1901259: chloroplast rRNA processing2.22E-04
15GO:1905039: carboxylic acid transmembrane transport3.40E-04
16GO:0005980: glycogen catabolic process3.40E-04
17GO:1905200: gibberellic acid transmembrane transport3.40E-04
18GO:0046467: membrane lipid biosynthetic process3.40E-04
19GO:0043953: protein transport by the Tat complex3.40E-04
20GO:0015671: oxygen transport3.40E-04
21GO:0071277: cellular response to calcium ion3.40E-04
22GO:0065002: intracellular protein transmembrane transport3.40E-04
23GO:0080093: regulation of photorespiration3.40E-04
24GO:0019276: UDP-N-acetylgalactosamine metabolic process3.40E-04
25GO:0031998: regulation of fatty acid beta-oxidation3.40E-04
26GO:0010028: xanthophyll cycle3.40E-04
27GO:0034337: RNA folding3.40E-04
28GO:0006047: UDP-N-acetylglucosamine metabolic process3.40E-04
29GO:0000476: maturation of 4.5S rRNA3.40E-04
30GO:0000967: rRNA 5'-end processing3.40E-04
31GO:0080112: seed growth3.40E-04
32GO:0019252: starch biosynthetic process4.50E-04
33GO:0006098: pentose-phosphate shunt5.35E-04
34GO:0006810: transport6.27E-04
35GO:0005982: starch metabolic process6.32E-04
36GO:0016124: xanthophyll catabolic process7.40E-04
37GO:0006898: receptor-mediated endocytosis7.40E-04
38GO:0060151: peroxisome localization7.40E-04
39GO:0071457: cellular response to ozone7.40E-04
40GO:0016122: xanthophyll metabolic process7.40E-04
41GO:0016121: carotene catabolic process7.40E-04
42GO:0034470: ncRNA processing7.40E-04
43GO:0051645: Golgi localization7.40E-04
44GO:0080029: cellular response to boron-containing substance levels7.40E-04
45GO:0006094: gluconeogenesis1.10E-03
46GO:0030048: actin filament-based movement1.10E-03
47GO:0006048: UDP-N-acetylglucosamine biosynthetic process1.20E-03
48GO:0009405: pathogenesis1.20E-03
49GO:0090391: granum assembly1.20E-03
50GO:0051646: mitochondrion localization1.20E-03
51GO:0090436: leaf pavement cell development1.20E-03
52GO:0006696: ergosterol biosynthetic process1.20E-03
53GO:0005977: glycogen metabolic process1.20E-03
54GO:0010020: chloroplast fission1.23E-03
55GO:0048467: gynoecium development1.23E-03
56GO:0010143: cutin biosynthetic process1.23E-03
57GO:0015979: photosynthesis1.52E-03
58GO:0034599: cellular response to oxidative stress1.56E-03
59GO:0015696: ammonium transport1.72E-03
60GO:0046713: borate transport1.72E-03
61GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.72E-03
62GO:1902358: sulfate transmembrane transport1.72E-03
63GO:0045338: farnesyl diphosphate metabolic process1.72E-03
64GO:0006020: inositol metabolic process1.72E-03
65GO:0071484: cellular response to light intensity1.72E-03
66GO:0009152: purine ribonucleotide biosynthetic process1.72E-03
67GO:0046653: tetrahydrofolate metabolic process1.72E-03
68GO:0009052: pentose-phosphate shunt, non-oxidative branch1.72E-03
69GO:0009768: photosynthesis, light harvesting in photosystem I1.88E-03
70GO:0010114: response to red light2.03E-03
71GO:0019748: secondary metabolic process2.26E-03
72GO:0006021: inositol biosynthetic process2.31E-03
73GO:0071483: cellular response to blue light2.31E-03
74GO:0010021: amylopectin biosynthetic process2.31E-03
75GO:0010037: response to carbon dioxide2.31E-03
76GO:0015976: carbon utilization2.31E-03
77GO:0071486: cellular response to high light intensity2.31E-03
78GO:0009765: photosynthesis, light harvesting2.31E-03
79GO:0072488: ammonium transmembrane transport2.31E-03
80GO:2000122: negative regulation of stomatal complex development2.31E-03
81GO:0009306: protein secretion2.68E-03
82GO:0055114: oxidation-reduction process2.90E-03
83GO:0006656: phosphatidylcholine biosynthetic process2.96E-03
84GO:0006564: L-serine biosynthetic process2.96E-03
85GO:0009904: chloroplast accumulation movement2.96E-03
86GO:0006097: glyoxylate cycle2.96E-03
87GO:0071493: cellular response to UV-B2.96E-03
88GO:0010190: cytochrome b6f complex assembly3.65E-03
89GO:0009228: thiamine biosynthetic process3.65E-03
90GO:0046855: inositol phosphate dephosphorylation3.65E-03
91GO:0009643: photosynthetic acclimation3.65E-03
92GO:0010304: PSII associated light-harvesting complex II catabolic process3.65E-03
93GO:0042549: photosystem II stabilization3.65E-03
94GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.65E-03
95GO:1902456: regulation of stomatal opening3.65E-03
96GO:0009903: chloroplast avoidance movement4.40E-03
97GO:0009854: oxidative photosynthetic carbon pathway4.40E-03
98GO:0071333: cellular response to glucose stimulus4.40E-03
99GO:0009955: adaxial/abaxial pattern specification4.40E-03
100GO:0032502: developmental process4.45E-03
101GO:0008272: sulfate transport5.19E-03
102GO:0009769: photosynthesis, light harvesting in photosystem II5.19E-03
103GO:0009645: response to low light intensity stimulus5.19E-03
104GO:1900056: negative regulation of leaf senescence5.19E-03
105GO:0010196: nonphotochemical quenching5.19E-03
106GO:0009642: response to light intensity6.03E-03
107GO:0042255: ribosome assembly6.03E-03
108GO:0006353: DNA-templated transcription, termination6.03E-03
109GO:0070413: trehalose metabolism in response to stress6.03E-03
110GO:0010078: maintenance of root meristem identity6.03E-03
111GO:0009704: de-etiolation6.03E-03
112GO:0010027: thylakoid membrane organization6.03E-03
113GO:0050821: protein stabilization6.03E-03
114GO:0052543: callose deposition in cell wall6.03E-03
115GO:0016559: peroxisome fission6.03E-03
116GO:0032544: plastid translation6.92E-03
117GO:0043562: cellular response to nitrogen levels6.92E-03
118GO:0071482: cellular response to light stimulus6.92E-03
119GO:0015996: chlorophyll catabolic process6.92E-03
120GO:0019430: removal of superoxide radicals6.92E-03
121GO:0019432: triglyceride biosynthetic process7.85E-03
122GO:0090333: regulation of stomatal closure7.85E-03
123GO:0009821: alkaloid biosynthetic process7.85E-03
124GO:0010380: regulation of chlorophyll biosynthetic process8.82E-03
125GO:0042761: very long-chain fatty acid biosynthetic process8.82E-03
126GO:0009641: shade avoidance9.84E-03
127GO:0009853: photorespiration1.00E-02
128GO:0072593: reactive oxygen species metabolic process1.09E-02
129GO:0043085: positive regulation of catalytic activity1.09E-02
130GO:0015770: sucrose transport1.09E-02
131GO:0009684: indoleacetic acid biosynthetic process1.09E-02
132GO:0006631: fatty acid metabolic process1.19E-02
133GO:0016024: CDP-diacylglycerol biosynthetic process1.20E-02
134GO:0006790: sulfur compound metabolic process1.20E-02
135GO:0006108: malate metabolic process1.31E-02
136GO:0009767: photosynthetic electron transport chain1.31E-02
137GO:0010588: cotyledon vascular tissue pattern formation1.31E-02
138GO:0007015: actin filament organization1.43E-02
139GO:0010223: secondary shoot formation1.43E-02
140GO:0009901: anther dehiscence1.55E-02
141GO:0046854: phosphatidylinositol phosphorylation1.55E-02
142GO:0009658: chloroplast organization1.63E-02
143GO:0006636: unsaturated fatty acid biosynthetic process1.67E-02
144GO:0009833: plant-type primary cell wall biogenesis1.67E-02
145GO:0005975: carbohydrate metabolic process1.67E-02
146GO:0005992: trehalose biosynthetic process1.80E-02
147GO:0016114: terpenoid biosynthetic process2.07E-02
148GO:0003333: amino acid transmembrane transport2.07E-02
149GO:0006096: glycolytic process2.07E-02
150GO:0019915: lipid storage2.07E-02
151GO:0009269: response to desiccation2.07E-02
152GO:0030433: ubiquitin-dependent ERAD pathway2.21E-02
153GO:0016226: iron-sulfur cluster assembly2.21E-02
154GO:0071215: cellular response to abscisic acid stimulus2.35E-02
155GO:0009624: response to nematode2.49E-02
156GO:0016117: carotenoid biosynthetic process2.64E-02
157GO:0080022: primary root development2.79E-02
158GO:0010087: phloem or xylem histogenesis2.79E-02
159GO:0042631: cellular response to water deprivation2.79E-02
160GO:0071472: cellular response to salt stress2.94E-02
161GO:0010154: fruit development2.94E-02
162GO:0006662: glycerol ether metabolic process2.94E-02
163GO:0009741: response to brassinosteroid2.94E-02
164GO:0009958: positive gravitropism2.94E-02
165GO:0006520: cellular amino acid metabolic process2.94E-02
166GO:0048825: cotyledon development3.25E-02
167GO:0009851: auxin biosynthetic process3.25E-02
168GO:0009791: post-embryonic development3.25E-02
169GO:0009058: biosynthetic process3.28E-02
170GO:0032259: methylation3.31E-02
171GO:0009630: gravitropism3.58E-02
172GO:0010090: trichome morphogenesis3.75E-02
173GO:1901657: glycosyl compound metabolic process3.75E-02
174GO:0009567: double fertilization forming a zygote and endosperm3.92E-02
175GO:0008152: metabolic process3.93E-02
176GO:0001666: response to hypoxia4.44E-02
177GO:0016126: sterol biosynthetic process4.44E-02
178GO:0046686: response to cadmium ion4.62E-02
179GO:0042128: nitrate assimilation4.80E-02
RankGO TermAdjusted P value
1GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
2GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
3GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
4GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
5GO:0008465: glycerate dehydrogenase activity0.00E+00
6GO:0046408: chlorophyll synthetase activity0.00E+00
7GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
8GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
9GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
10GO:0046422: violaxanthin de-epoxidase activity0.00E+00
11GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
12GO:0009011: starch synthase activity5.92E-07
13GO:0004332: fructose-bisphosphate aldolase activity1.63E-04
14GO:0004645: phosphorylase activity3.40E-04
15GO:0034256: chlorophyll(ide) b reductase activity3.40E-04
16GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity3.40E-04
17GO:0015168: glycerol transmembrane transporter activity3.40E-04
18GO:0045486: naringenin 3-dioxygenase activity3.40E-04
19GO:0005344: oxygen transporter activity3.40E-04
20GO:0035671: enone reductase activity3.40E-04
21GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity3.40E-04
22GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity3.40E-04
23GO:0030794: (S)-coclaurine-N-methyltransferase activity3.40E-04
24GO:1905201: gibberellin transmembrane transporter activity3.40E-04
25GO:0008184: glycogen phosphorylase activity3.40E-04
26GO:0052833: inositol monophosphate 4-phosphatase activity7.40E-04
27GO:0019172: glyoxalase III activity7.40E-04
28GO:0019156: isoamylase activity7.40E-04
29GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.40E-04
30GO:0000234: phosphoethanolamine N-methyltransferase activity7.40E-04
31GO:0047746: chlorophyllase activity7.40E-04
32GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity7.40E-04
33GO:0009977: proton motive force dependent protein transmembrane transporter activity7.40E-04
34GO:0004617: phosphoglycerate dehydrogenase activity7.40E-04
35GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity7.40E-04
36GO:0052832: inositol monophosphate 3-phosphatase activity7.40E-04
37GO:0033201: alpha-1,4-glucan synthase activity7.40E-04
38GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity7.40E-04
39GO:0080097: L-tryptophan:pyruvate aminotransferase activity7.40E-04
40GO:0008934: inositol monophosphate 1-phosphatase activity7.40E-04
41GO:0090729: toxin activity1.20E-03
42GO:0004751: ribose-5-phosphate isomerase activity1.20E-03
43GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.20E-03
44GO:0008864: formyltetrahydrofolate deformylase activity1.20E-03
45GO:0004373: glycogen (starch) synthase activity1.20E-03
46GO:0050734: hydroxycinnamoyltransferase activity1.20E-03
47GO:0003774: motor activity1.23E-03
48GO:0031409: pigment binding1.54E-03
49GO:0022890: inorganic cation transmembrane transporter activity1.72E-03
50GO:0016851: magnesium chelatase activity1.72E-03
51GO:0046715: borate transmembrane transporter activity1.72E-03
52GO:0015204: urea transmembrane transporter activity2.31E-03
53GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.31E-03
54GO:0003727: single-stranded RNA binding2.68E-03
55GO:0042802: identical protein binding2.77E-03
56GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity2.96E-03
57GO:0016846: carbon-sulfur lyase activity2.96E-03
58GO:0004556: alpha-amylase activity3.65E-03
59GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.65E-03
60GO:0004462: lactoylglutathione lyase activity3.65E-03
61GO:0004784: superoxide dismutase activity3.65E-03
62GO:0016615: malate dehydrogenase activity3.65E-03
63GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.65E-03
64GO:0008519: ammonium transmembrane transporter activity3.65E-03
65GO:2001070: starch binding3.65E-03
66GO:0016491: oxidoreductase activity4.37E-03
67GO:0030060: L-malate dehydrogenase activity4.40E-03
68GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.40E-03
69GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.40E-03
70GO:0016791: phosphatase activity5.05E-03
71GO:0019843: rRNA binding6.21E-03
72GO:0016168: chlorophyll binding6.38E-03
73GO:0008271: secondary active sulfate transmembrane transporter activity6.92E-03
74GO:0016844: strictosidine synthase activity8.82E-03
75GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity8.82E-03
76GO:0015174: basic amino acid transmembrane transporter activity8.82E-03
77GO:0008047: enzyme activator activity9.84E-03
78GO:0015020: glucuronosyltransferase activity9.84E-03
79GO:0008515: sucrose transmembrane transporter activity1.09E-02
80GO:0015386: potassium:proton antiporter activity1.09E-02
81GO:0008559: xenobiotic-transporting ATPase activity1.09E-02
82GO:0015116: sulfate transmembrane transporter activity1.20E-02
83GO:0004185: serine-type carboxypeptidase activity1.29E-02
84GO:0004022: alcohol dehydrogenase (NAD) activity1.31E-02
85GO:0004089: carbonate dehydratase activity1.31E-02
86GO:0031072: heat shock protein binding1.31E-02
87GO:0003725: double-stranded RNA binding1.31E-02
88GO:0004565: beta-galactosidase activity1.31E-02
89GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.43E-02
90GO:0008266: poly(U) RNA binding1.43E-02
91GO:0051119: sugar transmembrane transporter activity1.55E-02
92GO:0051287: NAD binding1.57E-02
93GO:0051536: iron-sulfur cluster binding1.80E-02
94GO:0031418: L-ascorbic acid binding1.80E-02
95GO:0015079: potassium ion transmembrane transporter activity1.93E-02
96GO:0005216: ion channel activity1.93E-02
97GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.13E-02
98GO:0016779: nucleotidyltransferase activity2.21E-02
99GO:0016760: cellulose synthase (UDP-forming) activity2.35E-02
100GO:0047134: protein-disulfide reductase activity2.64E-02
101GO:0004791: thioredoxin-disulfide reductase activity3.10E-02
102GO:0015299: solute:proton antiporter activity3.10E-02
103GO:0048038: quinone binding3.42E-02
104GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.75E-02
105GO:0016759: cellulose synthase activity3.92E-02
106GO:0016597: amino acid binding4.26E-02
107GO:0015250: water channel activity4.44E-02
108GO:0102483: scopolin beta-glucosidase activity4.98E-02
109GO:0003743: translation initiation factor activity4.99E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0009507: chloroplast3.20E-33
4GO:0009534: chloroplast thylakoid1.00E-16
5GO:0009535: chloroplast thylakoid membrane1.98E-14
6GO:0009570: chloroplast stroma2.44E-08
7GO:0009579: thylakoid8.46E-08
8GO:0009941: chloroplast envelope3.02E-07
9GO:0009543: chloroplast thylakoid lumen1.89E-06
10GO:0031969: chloroplast membrane4.89E-06
11GO:0033281: TAT protein transport complex1.84E-05
12GO:0010287: plastoglobule2.07E-05
13GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.13E-05
14GO:0031977: thylakoid lumen2.67E-04
15GO:0009344: nitrite reductase complex [NAD(P)H]3.40E-04
16GO:0031361: integral component of thylakoid membrane3.40E-04
17GO:0016459: myosin complex7.37E-04
18GO:0043036: starch grain7.40E-04
19GO:0010007: magnesium chelatase complex1.20E-03
20GO:0030095: chloroplast photosystem II1.23E-03
21GO:0030076: light-harvesting complex1.38E-03
22GO:0030658: transport vesicle membrane1.72E-03
23GO:0042651: thylakoid membrane1.88E-03
24GO:0009654: photosystem II oxygen evolving complex1.88E-03
25GO:0009526: plastid envelope2.31E-03
26GO:0009517: PSII associated light-harvesting complex II2.31E-03
27GO:0009523: photosystem II3.89E-03
28GO:0019898: extrinsic component of membrane3.89E-03
29GO:0031982: vesicle6.03E-03
30GO:0009501: amyloplast6.03E-03
31GO:0005773: vacuole7.09E-03
32GO:0005763: mitochondrial small ribosomal subunit7.85E-03
33GO:0032040: small-subunit processome1.20E-02
34GO:0009508: plastid chromosome1.31E-02
35GO:0005887: integral component of plasma membrane1.49E-02
36GO:0048046: apoplast1.58E-02
37GO:0015935: small ribosomal subunit2.07E-02
38GO:0005777: peroxisome2.73E-02
39GO:0009522: photosystem I3.10E-02
40GO:0005623: cell3.20E-02
41GO:0009295: nucleoid4.09E-02
42GO:0010319: stromule4.09E-02
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Gene type



Gene DE type