Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G46300

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1903224: regulation of endodermal cell differentiation0.00E+00
2GO:0080127: fruit septum development0.00E+00
3GO:1905255: regulation of RNA binding transcription factor activity0.00E+00
4GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
5GO:0045184: establishment of protein localization0.00E+00
6GO:0006907: pinocytosis0.00E+00
7GO:0070125: mitochondrial translational elongation0.00E+00
8GO:0031222: arabinan catabolic process0.00E+00
9GO:0061157: mRNA destabilization0.00E+00
10GO:0009734: auxin-activated signaling pathway2.50E-08
11GO:0009733: response to auxin4.25E-08
12GO:0040008: regulation of growth1.96E-06
13GO:0046620: regulation of organ growth1.30E-04
14GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.92E-04
15GO:0000373: Group II intron splicing2.32E-04
16GO:1900865: chloroplast RNA modification2.95E-04
17GO:0048829: root cap development3.66E-04
18GO:0048497: maintenance of floral organ identity5.83E-04
19GO:0016123: xanthophyll biosynthetic process5.83E-04
20GO:0016554: cytidine to uridine editing8.06E-04
21GO:0010726: positive regulation of hydrogen peroxide metabolic process9.65E-04
22GO:0030198: extracellular matrix organization9.65E-04
23GO:0006438: valyl-tRNA aminoacylation9.65E-04
24GO:0090558: plant epidermis development9.65E-04
25GO:0032958: inositol phosphate biosynthetic process9.65E-04
26GO:0010480: microsporocyte differentiation9.65E-04
27GO:0046520: sphingoid biosynthetic process9.65E-04
28GO:0035987: endodermal cell differentiation9.65E-04
29GO:0015904: tetracycline transport9.65E-04
30GO:0034757: negative regulation of iron ion transport9.65E-04
31GO:0006285: base-excision repair, AP site formation9.65E-04
32GO:0042659: regulation of cell fate specification9.65E-04
33GO:0000025: maltose catabolic process9.65E-04
34GO:0030488: tRNA methylation1.06E-03
35GO:0009686: gibberellin biosynthetic process1.83E-03
36GO:1900871: chloroplast mRNA modification2.11E-03
37GO:0010271: regulation of chlorophyll catabolic process2.11E-03
38GO:0018026: peptidyl-lysine monomethylation2.11E-03
39GO:0071497: cellular response to freezing2.11E-03
40GO:1900033: negative regulation of trichome patterning2.11E-03
41GO:0001736: establishment of planar polarity2.11E-03
42GO:0080009: mRNA methylation2.11E-03
43GO:0009786: regulation of asymmetric cell division2.11E-03
44GO:0031648: protein destabilization2.11E-03
45GO:0006568: tryptophan metabolic process2.11E-03
46GO:2000123: positive regulation of stomatal complex development2.11E-03
47GO:0006741: NADP biosynthetic process2.11E-03
48GO:0006865: amino acid transport2.19E-03
49GO:0009741: response to brassinosteroid2.77E-03
50GO:0009098: leucine biosynthetic process2.96E-03
51GO:0009641: shade avoidance3.47E-03
52GO:0009926: auxin polar transport3.49E-03
53GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion3.50E-03
54GO:0071398: cellular response to fatty acid3.50E-03
55GO:0048575: short-day photoperiodism, flowering3.50E-03
56GO:0019674: NAD metabolic process3.50E-03
57GO:0045910: negative regulation of DNA recombination3.50E-03
58GO:0090506: axillary shoot meristem initiation3.50E-03
59GO:0033591: response to L-ascorbic acid3.50E-03
60GO:0090708: specification of plant organ axis polarity3.50E-03
61GO:0080117: secondary growth3.50E-03
62GO:0032502: developmental process3.96E-03
63GO:0010583: response to cyclopentenone3.96E-03
64GO:0010582: floral meristem determinacy4.62E-03
65GO:0006355: regulation of transcription, DNA-templated5.01E-03
66GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity5.11E-03
67GO:1990019: protein storage vacuole organization5.11E-03
68GO:0010321: regulation of vegetative phase change5.11E-03
69GO:0019363: pyridine nucleotide biosynthetic process5.11E-03
70GO:0010371: regulation of gibberellin biosynthetic process5.11E-03
71GO:0006020: inositol metabolic process5.11E-03
72GO:0051513: regulation of monopolar cell growth5.11E-03
73GO:0051639: actin filament network formation5.11E-03
74GO:0034059: response to anoxia5.11E-03
75GO:0007276: gamete generation5.11E-03
76GO:0010102: lateral root morphogenesis5.26E-03
77GO:0009725: response to hormone5.26E-03
78GO:0010588: cotyledon vascular tissue pattern formation5.26E-03
79GO:0009736: cytokinin-activated signaling pathway5.53E-03
80GO:0006351: transcription, DNA-templated6.59E-03
81GO:0042991: transcription factor import into nucleus6.92E-03
82GO:0009755: hormone-mediated signaling pathway6.92E-03
83GO:1901141: regulation of lignin biosynthetic process6.92E-03
84GO:0048629: trichome patterning6.92E-03
85GO:0051764: actin crosslink formation6.92E-03
86GO:0042274: ribosomal small subunit biogenesis6.92E-03
87GO:0009765: photosynthesis, light harvesting6.92E-03
88GO:0030104: water homeostasis6.92E-03
89GO:2000038: regulation of stomatal complex development6.92E-03
90GO:0006863: purine nucleobase transport7.48E-03
91GO:0051017: actin filament bundle assembly8.31E-03
92GO:0000160: phosphorelay signal transduction system8.81E-03
93GO:0009696: salicylic acid metabolic process8.93E-03
94GO:0016120: carotene biosynthetic process8.93E-03
95GO:0045487: gibberellin catabolic process8.93E-03
96GO:0009107: lipoate biosynthetic process8.93E-03
97GO:0010438: cellular response to sulfur starvation8.93E-03
98GO:0010158: abaxial cell fate specification8.93E-03
99GO:0080110: sporopollenin biosynthetic process8.93E-03
100GO:0010375: stomatal complex patterning8.93E-03
101GO:0016131: brassinosteroid metabolic process8.93E-03
102GO:0003333: amino acid transmembrane transport1.01E-02
103GO:0033365: protein localization to organelle1.11E-02
104GO:0003006: developmental process involved in reproduction1.11E-02
105GO:0018258: protein O-linked glycosylation via hydroxyproline1.11E-02
106GO:0010942: positive regulation of cell death1.11E-02
107GO:0010405: arabinogalactan protein metabolic process1.11E-02
108GO:0009959: negative gravitropism1.11E-02
109GO:0009913: epidermal cell differentiation1.11E-02
110GO:1902456: regulation of stomatal opening1.11E-02
111GO:0010358: leaf shaping1.11E-02
112GO:0042793: transcription from plastid promoter1.11E-02
113GO:0048831: regulation of shoot system development1.11E-02
114GO:0071215: cellular response to abscisic acid stimulus1.21E-02
115GO:0009826: unidimensional cell growth1.28E-02
116GO:0042127: regulation of cell proliferation1.32E-02
117GO:0006284: base-excision repair1.32E-02
118GO:0009793: embryo development ending in seed dormancy1.32E-02
119GO:0009082: branched-chain amino acid biosynthetic process1.35E-02
120GO:0048509: regulation of meristem development1.35E-02
121GO:0009099: valine biosynthetic process1.35E-02
122GO:2000033: regulation of seed dormancy process1.35E-02
123GO:0031930: mitochondria-nucleus signaling pathway1.35E-02
124GO:0009861: jasmonic acid and ethylene-dependent systemic resistance1.35E-02
125GO:2000067: regulation of root morphogenesis1.35E-02
126GO:0009658: chloroplast organization1.37E-02
127GO:0010087: phloem or xylem histogenesis1.55E-02
128GO:0009744: response to sucrose1.55E-02
129GO:0010050: vegetative phase change1.60E-02
130GO:0048437: floral organ development1.60E-02
131GO:0010444: guard mother cell differentiation1.60E-02
132GO:0030307: positive regulation of cell growth1.60E-02
133GO:0000082: G1/S transition of mitotic cell cycle1.60E-02
134GO:0010161: red light signaling pathway1.60E-02
135GO:0006955: immune response1.60E-02
136GO:1900056: negative regulation of leaf senescence1.60E-02
137GO:0030497: fatty acid elongation1.60E-02
138GO:0010098: suspensor development1.60E-02
139GO:0009416: response to light stimulus1.66E-02
140GO:0010182: sugar mediated signaling pathway1.68E-02
141GO:0010268: brassinosteroid homeostasis1.68E-02
142GO:0009958: positive gravitropism1.68E-02
143GO:0009850: auxin metabolic process1.87E-02
144GO:0009690: cytokinin metabolic process1.87E-02
145GO:0009819: drought recovery1.87E-02
146GO:0009704: de-etiolation1.87E-02
147GO:0042255: ribosome assembly1.87E-02
148GO:2000070: regulation of response to water deprivation1.87E-02
149GO:0006353: DNA-templated transcription, termination1.87E-02
150GO:0010492: maintenance of shoot apical meristem identity1.87E-02
151GO:0055075: potassium ion homeostasis1.87E-02
152GO:0000105: histidine biosynthetic process1.87E-02
153GO:0006402: mRNA catabolic process1.87E-02
154GO:0010439: regulation of glucosinolate biosynthetic process1.87E-02
155GO:0048825: cotyledon development1.94E-02
156GO:0071554: cell wall organization or biogenesis2.08E-02
157GO:0009097: isoleucine biosynthetic process2.15E-02
158GO:0010100: negative regulation of photomorphogenesis2.15E-02
159GO:0010497: plasmodesmata-mediated intercellular transport2.15E-02
160GO:0010099: regulation of photomorphogenesis2.15E-02
161GO:1901657: glycosyl compound metabolic process2.37E-02
162GO:0006098: pentose-phosphate shunt2.45E-02
163GO:0006783: heme biosynthetic process2.45E-02
164GO:0048507: meristem development2.45E-02
165GO:0009056: catabolic process2.45E-02
166GO:0000902: cell morphogenesis2.45E-02
167GO:0051865: protein autoubiquitination2.45E-02
168GO:0006464: cellular protein modification process2.52E-02
169GO:0009828: plant-type cell wall loosening2.52E-02
170GO:0009909: regulation of flower development2.58E-02
171GO:0006468: protein phosphorylation2.61E-02
172GO:0031425: chloroplast RNA processing2.76E-02
173GO:0009638: phototropism2.76E-02
174GO:0006779: porphyrin-containing compound biosynthetic process2.76E-02
175GO:2000280: regulation of root development2.76E-02
176GO:0048316: seed development2.92E-02
177GO:0010027: thylakoid membrane organization3.02E-02
178GO:0009870: defense response signaling pathway, resistance gene-dependent3.08E-02
179GO:0006782: protoporphyrinogen IX biosynthetic process3.08E-02
180GO:0006298: mismatch repair3.08E-02
181GO:0016441: posttranscriptional gene silencing3.08E-02
182GO:0006949: syncytium formation3.08E-02
183GO:0010162: seed dormancy process3.08E-02
184GO:0009299: mRNA transcription3.08E-02
185GO:0010029: regulation of seed germination3.19E-02
186GO:0071555: cell wall organization3.20E-02
187GO:0009740: gibberellic acid mediated signaling pathway3.28E-02
188GO:0009073: aromatic amino acid family biosynthetic process3.42E-02
189GO:0009682: induced systemic resistance3.42E-02
190GO:0009750: response to fructose3.42E-02
191GO:0048229: gametophyte development3.42E-02
192GO:0048765: root hair cell differentiation3.42E-02
193GO:0015995: chlorophyll biosynthetic process3.55E-02
194GO:0048573: photoperiodism, flowering3.55E-02
195GO:0016042: lipid catabolic process3.63E-02
196GO:0005983: starch catabolic process3.76E-02
197GO:0010105: negative regulation of ethylene-activated signaling pathway3.76E-02
198GO:0012501: programmed cell death3.76E-02
199GO:0009742: brassinosteroid mediated signaling pathway3.80E-02
200GO:0009817: defense response to fungus, incompatible interaction3.93E-02
201GO:2000012: regulation of auxin polar transport4.12E-02
202GO:0010628: positive regulation of gene expression4.12E-02
203GO:0009785: blue light signaling pathway4.12E-02
204GO:0006006: glucose metabolic process4.12E-02
205GO:2000028: regulation of photoperiodism, flowering4.12E-02
206GO:0009691: cytokinin biosynthetic process4.12E-02
207GO:0010075: regulation of meristem growth4.12E-02
208GO:0006094: gluconeogenesis4.12E-02
209GO:0009767: photosynthetic electron transport chain4.12E-02
210GO:0030048: actin filament-based movement4.12E-02
211GO:0010311: lateral root formation4.13E-02
212GO:0010020: chloroplast fission4.49E-02
213GO:0010223: secondary shoot formation4.49E-02
214GO:0009887: animal organ morphogenesis4.49E-02
215GO:0009934: regulation of meristem structural organization4.49E-02
216GO:0006302: double-strand break repair4.49E-02
217GO:0048467: gynoecium development4.49E-02
218GO:0010207: photosystem II assembly4.49E-02
219GO:0090351: seedling development4.87E-02
220GO:0009867: jasmonic acid mediated signaling pathway4.97E-02
RankGO TermAdjusted P value
1GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
2GO:0045435: lycopene epsilon cyclase activity0.00E+00
3GO:0047661: amino-acid racemase activity0.00E+00
4GO:0047793: cycloeucalenol cycloisomerase activity0.00E+00
5GO:0015267: channel activity0.00E+00
6GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
7GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity0.00E+00
8GO:0005201: extracellular matrix structural constituent0.00E+00
9GO:0071633: dihydroceramidase activity0.00E+00
10GO:0017118: lipoyltransferase activity3.81E-05
11GO:0001872: (1->3)-beta-D-glucan binding2.39E-04
12GO:0080030: methyl indole-3-acetate esterase activity8.06E-04
13GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity9.65E-04
14GO:0000828: inositol hexakisphosphate kinase activity9.65E-04
15GO:0008395: steroid hydroxylase activity9.65E-04
16GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity9.65E-04
17GO:0004832: valine-tRNA ligase activity9.65E-04
18GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity9.65E-04
19GO:0052381: tRNA dimethylallyltransferase activity9.65E-04
20GO:0010313: phytochrome binding9.65E-04
21GO:0042736: NADH kinase activity9.65E-04
22GO:0033857: diphosphoinositol-pentakisphosphate kinase activity9.65E-04
23GO:0010012: steroid 22-alpha hydroxylase activity9.65E-04
24GO:0000170: sphingosine hydroxylase activity9.65E-04
25GO:0050139: nicotinate-N-glucosyltransferase activity9.65E-04
26GO:0000829: inositol heptakisphosphate kinase activity9.65E-04
27GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity9.65E-04
28GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity9.65E-04
29GO:0005227: calcium activated cation channel activity9.65E-04
30GO:0004425: indole-3-glycerol-phosphate synthase activity9.65E-04
31GO:0042834: peptidoglycan binding9.65E-04
32GO:0004134: 4-alpha-glucanotransferase activity9.65E-04
33GO:0005345: purine nucleobase transmembrane transporter activity1.29E-03
34GO:0004519: endonuclease activity1.98E-03
35GO:0008805: carbon-monoxide oxygenase activity2.11E-03
36GO:0042284: sphingolipid delta-4 desaturase activity2.11E-03
37GO:0008493: tetracycline transporter activity2.11E-03
38GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity2.11E-03
39GO:0050736: O-malonyltransferase activity2.11E-03
40GO:0009884: cytokinin receptor activity2.11E-03
41GO:0003852: 2-isopropylmalate synthase activity2.11E-03
42GO:0045543: gibberellin 2-beta-dioxygenase activity2.11E-03
43GO:0043425: bHLH transcription factor binding2.11E-03
44GO:0010296: prenylcysteine methylesterase activity2.11E-03
45GO:0016415: octanoyltransferase activity2.11E-03
46GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity2.11E-03
47GO:0003906: DNA-(apurinic or apyrimidinic site) lyase activity3.50E-03
48GO:0005034: osmosensor activity3.50E-03
49GO:0003700: transcription factor activity, sequence-specific DNA binding3.64E-03
50GO:0051015: actin filament binding4.31E-03
51GO:0016788: hydrolase activity, acting on ester bonds4.41E-03
52GO:0052656: L-isoleucine transaminase activity5.11E-03
53GO:0052654: L-leucine transaminase activity5.11E-03
54GO:0080031: methyl salicylate esterase activity5.11E-03
55GO:0045544: gibberellin 20-oxidase activity5.11E-03
56GO:0052655: L-valine transaminase activity5.11E-03
57GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity5.11E-03
58GO:0015171: amino acid transmembrane transporter activity6.46E-03
59GO:0004084: branched-chain-amino-acid transaminase activity6.92E-03
60GO:0019199: transmembrane receptor protein kinase activity6.92E-03
61GO:0046556: alpha-L-arabinofuranosidase activity6.92E-03
62GO:0016279: protein-lysine N-methyltransferase activity6.92E-03
63GO:0010011: auxin binding6.92E-03
64GO:0019104: DNA N-glycosylase activity6.92E-03
65GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed6.92E-03
66GO:0010328: auxin influx transmembrane transporter activity6.92E-03
67GO:0070696: transmembrane receptor protein serine/threonine kinase binding8.93E-03
68GO:0008725: DNA-3-methyladenine glycosylase activity8.93E-03
69GO:0033612: receptor serine/threonine kinase binding1.01E-02
70GO:0008408: 3'-5' exonuclease activity1.01E-02
71GO:0030983: mismatched DNA binding1.11E-02
72GO:1990714: hydroxyproline O-galactosyltransferase activity1.11E-02
73GO:0004332: fructose-bisphosphate aldolase activity1.11E-02
74GO:0004709: MAP kinase kinase kinase activity1.11E-02
75GO:0003727: single-stranded RNA binding1.32E-02
76GO:0016832: aldehyde-lyase activity1.35E-02
77GO:0019900: kinase binding1.35E-02
78GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.35E-02
79GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.39E-02
80GO:0003723: RNA binding1.54E-02
81GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity1.68E-02
82GO:0043621: protein self-association1.72E-02
83GO:0004674: protein serine/threonine kinase activity1.85E-02
84GO:0003951: NAD+ kinase activity2.15E-02
85GO:0008173: RNA methyltransferase activity2.15E-02
86GO:0003724: RNA helicase activity2.15E-02
87GO:0052689: carboxylic ester hydrolase activity2.35E-02
88GO:0003690: double-stranded DNA binding2.37E-02
89GO:0000156: phosphorelay response regulator activity2.37E-02
90GO:0016298: lipase activity2.37E-02
91GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity2.45E-02
92GO:0016759: cellulose synthase activity2.52E-02
93GO:0016413: O-acetyltransferase activity2.85E-02
94GO:0004871: signal transducer activity2.90E-02
95GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.95E-02
96GO:0003677: DNA binding3.04E-02
97GO:0004673: protein histidine kinase activity3.08E-02
98GO:0004805: trehalose-phosphatase activity3.08E-02
99GO:0042802: identical protein binding3.11E-02
100GO:0004722: protein serine/threonine phosphatase activity3.14E-02
101GO:0003779: actin binding3.41E-02
102GO:0030247: polysaccharide binding3.55E-02
103GO:0102483: scopolin beta-glucosidase activity3.55E-02
104GO:0043565: sequence-specific DNA binding3.78E-02
105GO:0015266: protein channel activity4.12E-02
106GO:0000155: phosphorelay sensor kinase activity4.12E-02
107GO:0003725: double-stranded RNA binding4.12E-02
108GO:0009055: electron carrier activity4.27E-02
109GO:0042973: glucan endo-1,3-beta-D-glucosidase activity4.49E-02
110GO:0003774: motor activity4.49E-02
111GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.54E-02
112GO:0008146: sulfotransferase activity4.87E-02
113GO:0004190: aspartic-type endopeptidase activity4.87E-02
114GO:0003712: transcription cofactor activity4.87E-02
115GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.97E-02
RankGO TermAdjusted P value
1GO:0000408: EKC/KEOPS complex0.00E+00
2GO:0000791: euchromatin9.65E-04
3GO:0009986: cell surface1.36E-03
4GO:0031357: integral component of chloroplast inner membrane2.11E-03
5GO:0030870: Mre11 complex2.11E-03
6GO:0000427: plastid-encoded plastid RNA polymerase complex2.11E-03
7GO:0010494: cytoplasmic stress granule2.50E-03
8GO:0046658: anchored component of plasma membrane3.11E-03
9GO:0019897: extrinsic component of plasma membrane3.50E-03
10GO:0030139: endocytic vesicle3.50E-03
11GO:0009507: chloroplast3.66E-03
12GO:0005884: actin filament4.02E-03
13GO:0005886: plasma membrane4.27E-03
14GO:0032432: actin filament bundle5.11E-03
15GO:0032585: multivesicular body membrane5.11E-03
16GO:0005578: proteinaceous extracellular matrix5.26E-03
17GO:0009544: chloroplast ATP synthase complex6.92E-03
18GO:0000795: synaptonemal complex8.93E-03
19GO:0009654: photosystem II oxygen evolving complex9.20E-03
20GO:0015629: actin cytoskeleton1.21E-02
21GO:0048226: Casparian strip1.87E-02
22GO:0009501: amyloplast1.87E-02
23GO:0019898: extrinsic component of membrane1.94E-02
24GO:0042644: chloroplast nucleoid2.45E-02
25GO:0016459: myosin complex3.08E-02
26GO:0009508: plastid chromosome4.12E-02
27GO:0031225: anchored component of membrane4.12E-02
28GO:0030095: chloroplast photosystem II4.49E-02
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Gene type



Gene DE type