GO Enrichment Analysis of Co-expressed Genes with
AT3G45230
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 2 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 3 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 4 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 5 | GO:1904966: positive regulation of vitamin E biosynthetic process | 0.00E+00 |
| 6 | GO:1904964: positive regulation of phytol biosynthetic process | 0.00E+00 |
| 7 | GO:0009773: photosynthetic electron transport in photosystem I | 7.82E-08 |
| 8 | GO:0015979: photosynthesis | 8.86E-08 |
| 9 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.11E-06 |
| 10 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 9.63E-06 |
| 11 | GO:0009657: plastid organization | 1.33E-04 |
| 12 | GO:0000476: maturation of 4.5S rRNA | 1.50E-04 |
| 13 | GO:0000967: rRNA 5'-end processing | 1.50E-04 |
| 14 | GO:0043686: co-translational protein modification | 1.50E-04 |
| 15 | GO:0034337: RNA folding | 1.50E-04 |
| 16 | GO:0015995: chlorophyll biosynthetic process | 2.14E-04 |
| 17 | GO:0034470: ncRNA processing | 3.42E-04 |
| 18 | GO:0051645: Golgi localization | 3.42E-04 |
| 19 | GO:0018026: peptidyl-lysine monomethylation | 3.42E-04 |
| 20 | GO:0060151: peroxisome localization | 3.42E-04 |
| 21 | GO:0030048: actin filament-based movement | 3.54E-04 |
| 22 | GO:0009405: pathogenesis | 5.61E-04 |
| 23 | GO:0051646: mitochondrion localization | 5.61E-04 |
| 24 | GO:0090391: granum assembly | 5.61E-04 |
| 25 | GO:0090436: leaf pavement cell development | 5.61E-04 |
| 26 | GO:0006696: ergosterol biosynthetic process | 5.61E-04 |
| 27 | GO:0005977: glycogen metabolic process | 5.61E-04 |
| 28 | GO:0071484: cellular response to light intensity | 8.03E-04 |
| 29 | GO:0009152: purine ribonucleotide biosynthetic process | 8.03E-04 |
| 30 | GO:0046653: tetrahydrofolate metabolic process | 8.03E-04 |
| 31 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 8.03E-04 |
| 32 | GO:0045338: farnesyl diphosphate metabolic process | 8.03E-04 |
| 33 | GO:0006020: inositol metabolic process | 8.03E-04 |
| 34 | GO:0009765: photosynthesis, light harvesting | 1.06E-03 |
| 35 | GO:0015994: chlorophyll metabolic process | 1.06E-03 |
| 36 | GO:0006021: inositol biosynthetic process | 1.06E-03 |
| 37 | GO:0010021: amylopectin biosynthetic process | 1.06E-03 |
| 38 | GO:0006564: L-serine biosynthetic process | 1.35E-03 |
| 39 | GO:0031365: N-terminal protein amino acid modification | 1.35E-03 |
| 40 | GO:0005975: carbohydrate metabolic process | 1.63E-03 |
| 41 | GO:0046855: inositol phosphate dephosphorylation | 1.65E-03 |
| 42 | GO:1902456: regulation of stomatal opening | 1.65E-03 |
| 43 | GO:0010190: cytochrome b6f complex assembly | 1.65E-03 |
| 44 | GO:0010027: thylakoid membrane organization | 1.88E-03 |
| 45 | GO:0071333: cellular response to glucose stimulus | 1.98E-03 |
| 46 | GO:1901259: chloroplast rRNA processing | 1.98E-03 |
| 47 | GO:0048280: vesicle fusion with Golgi apparatus | 1.98E-03 |
| 48 | GO:0009772: photosynthetic electron transport in photosystem II | 2.33E-03 |
| 49 | GO:0018298: protein-chromophore linkage | 2.45E-03 |
| 50 | GO:0006353: DNA-templated transcription, termination | 2.70E-03 |
| 51 | GO:0032544: plastid translation | 3.08E-03 |
| 52 | GO:0010206: photosystem II repair | 3.49E-03 |
| 53 | GO:0009416: response to light stimulus | 3.74E-03 |
| 54 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.91E-03 |
| 55 | GO:0071577: zinc II ion transmembrane transport | 3.91E-03 |
| 56 | GO:0006896: Golgi to vacuole transport | 4.35E-03 |
| 57 | GO:0006782: protoporphyrinogen IX biosynthetic process | 4.35E-03 |
| 58 | GO:0045036: protein targeting to chloroplast | 4.35E-03 |
| 59 | GO:0006415: translational termination | 4.80E-03 |
| 60 | GO:0006790: sulfur compound metabolic process | 5.27E-03 |
| 61 | GO:0016024: CDP-diacylglycerol biosynthetic process | 5.27E-03 |
| 62 | GO:0006810: transport | 5.56E-03 |
| 63 | GO:0048467: gynoecium development | 6.25E-03 |
| 64 | GO:0010143: cutin biosynthetic process | 6.25E-03 |
| 65 | GO:0010207: photosystem II assembly | 6.25E-03 |
| 66 | GO:0046854: phosphatidylinositol phosphorylation | 6.77E-03 |
| 67 | GO:0006418: tRNA aminoacylation for protein translation | 8.40E-03 |
| 68 | GO:0009768: photosynthesis, light harvesting in photosystem I | 8.40E-03 |
| 69 | GO:0061077: chaperone-mediated protein folding | 8.97E-03 |
| 70 | GO:0030245: cellulose catabolic process | 9.56E-03 |
| 71 | GO:0016226: iron-sulfur cluster assembly | 9.56E-03 |
| 72 | GO:0019748: secondary metabolic process | 9.56E-03 |
| 73 | GO:0071215: cellular response to abscisic acid stimulus | 1.02E-02 |
| 74 | GO:0009686: gibberellin biosynthetic process | 1.02E-02 |
| 75 | GO:0009306: protein secretion | 1.08E-02 |
| 76 | GO:0016117: carotenoid biosynthetic process | 1.14E-02 |
| 77 | GO:0042147: retrograde transport, endosome to Golgi | 1.14E-02 |
| 78 | GO:0010268: brassinosteroid homeostasis | 1.27E-02 |
| 79 | GO:0010154: fruit development | 1.27E-02 |
| 80 | GO:0006520: cellular amino acid metabolic process | 1.27E-02 |
| 81 | GO:0015986: ATP synthesis coupled proton transport | 1.34E-02 |
| 82 | GO:0006623: protein targeting to vacuole | 1.41E-02 |
| 83 | GO:0009791: post-embryonic development | 1.41E-02 |
| 84 | GO:0019252: starch biosynthetic process | 1.41E-02 |
| 85 | GO:0009735: response to cytokinin | 1.46E-02 |
| 86 | GO:0006891: intra-Golgi vesicle-mediated transport | 1.47E-02 |
| 87 | GO:0016132: brassinosteroid biosynthetic process | 1.47E-02 |
| 88 | GO:0010090: trichome morphogenesis | 1.62E-02 |
| 89 | GO:1901657: glycosyl compound metabolic process | 1.62E-02 |
| 90 | GO:0016125: sterol metabolic process | 1.69E-02 |
| 91 | GO:0016126: sterol biosynthetic process | 1.92E-02 |
| 92 | GO:0009658: chloroplast organization | 2.05E-02 |
| 93 | GO:0006888: ER to Golgi vesicle-mediated transport | 2.15E-02 |
| 94 | GO:0016049: cell growth | 2.23E-02 |
| 95 | GO:0009817: defense response to fungus, incompatible interaction | 2.31E-02 |
| 96 | GO:0048481: plant ovule development | 2.31E-02 |
| 97 | GO:0009813: flavonoid biosynthetic process | 2.40E-02 |
| 98 | GO:0080167: response to karrikin | 2.54E-02 |
| 99 | GO:0009853: photorespiration | 2.74E-02 |
| 100 | GO:0016051: carbohydrate biosynthetic process | 2.74E-02 |
| 101 | GO:0010114: response to red light | 3.28E-02 |
| 102 | GO:0042538: hyperosmotic salinity response | 3.85E-02 |
| 103 | GO:0006812: cation transport | 3.85E-02 |
| 104 | GO:0006364: rRNA processing | 4.05E-02 |
| 105 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.15E-02 |
| 106 | GO:0006417: regulation of translation | 4.36E-02 |
| 107 | GO:0048367: shoot system development | 4.67E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 2 | GO:0036361: racemase activity, acting on amino acids and derivatives | 0.00E+00 |
| 3 | GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives | 0.00E+00 |
| 4 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 5 | GO:0016851: magnesium chelatase activity | 9.63E-06 |
| 6 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.80E-05 |
| 7 | GO:0043495: protein anchor | 1.80E-05 |
| 8 | GO:0042802: identical protein binding | 5.67E-05 |
| 9 | GO:0019899: enzyme binding | 8.22E-05 |
| 10 | GO:0042586: peptide deformylase activity | 1.50E-04 |
| 11 | GO:0051777: ent-kaurenoate oxidase activity | 1.50E-04 |
| 12 | GO:0004856: xylulokinase activity | 1.50E-04 |
| 13 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.50E-04 |
| 14 | GO:0016168: chlorophyll binding | 1.84E-04 |
| 15 | GO:0004617: phosphoglycerate dehydrogenase activity | 3.42E-04 |
| 16 | GO:0052832: inositol monophosphate 3-phosphatase activity | 3.42E-04 |
| 17 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 3.42E-04 |
| 18 | GO:0008934: inositol monophosphate 1-phosphatase activity | 3.42E-04 |
| 19 | GO:0052833: inositol monophosphate 4-phosphatase activity | 3.42E-04 |
| 20 | GO:0019156: isoamylase activity | 3.42E-04 |
| 21 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 3.42E-04 |
| 22 | GO:0047746: chlorophyllase activity | 3.42E-04 |
| 23 | GO:0003774: motor activity | 4.00E-04 |
| 24 | GO:0005528: FK506 binding | 5.53E-04 |
| 25 | GO:0002161: aminoacyl-tRNA editing activity | 5.61E-04 |
| 26 | GO:0090729: toxin activity | 5.61E-04 |
| 27 | GO:0004751: ribose-5-phosphate isomerase activity | 5.61E-04 |
| 28 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 5.61E-04 |
| 29 | GO:0008864: formyltetrahydrofolate deformylase activity | 5.61E-04 |
| 30 | GO:0022891: substrate-specific transmembrane transporter activity | 7.93E-04 |
| 31 | GO:0016149: translation release factor activity, codon specific | 8.03E-04 |
| 32 | GO:0045430: chalcone isomerase activity | 1.06E-03 |
| 33 | GO:0016279: protein-lysine N-methyltransferase activity | 1.06E-03 |
| 34 | GO:0048038: quinone binding | 1.31E-03 |
| 35 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.35E-03 |
| 36 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.65E-03 |
| 37 | GO:0004556: alpha-amylase activity | 1.65E-03 |
| 38 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.65E-03 |
| 39 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.98E-03 |
| 40 | GO:0003747: translation release factor activity | 3.49E-03 |
| 41 | GO:0004185: serine-type carboxypeptidase activity | 3.98E-03 |
| 42 | GO:0015020: glucuronosyltransferase activity | 4.35E-03 |
| 43 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.64E-03 |
| 44 | GO:0000049: tRNA binding | 5.27E-03 |
| 45 | GO:0004565: beta-galactosidase activity | 5.75E-03 |
| 46 | GO:0031072: heat shock protein binding | 5.75E-03 |
| 47 | GO:0008266: poly(U) RNA binding | 6.25E-03 |
| 48 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 6.25E-03 |
| 49 | GO:0031409: pigment binding | 7.30E-03 |
| 50 | GO:0005385: zinc ion transmembrane transporter activity | 7.84E-03 |
| 51 | GO:0051536: iron-sulfur cluster binding | 7.84E-03 |
| 52 | GO:0008324: cation transmembrane transporter activity | 8.40E-03 |
| 53 | GO:0019843: rRNA binding | 9.54E-03 |
| 54 | GO:0008810: cellulase activity | 1.02E-02 |
| 55 | GO:0003727: single-stranded RNA binding | 1.08E-02 |
| 56 | GO:0004812: aminoacyl-tRNA ligase activity | 1.14E-02 |
| 57 | GO:0008565: protein transporter activity | 1.14E-02 |
| 58 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.27E-02 |
| 59 | GO:0016791: phosphatase activity | 1.69E-02 |
| 60 | GO:0016597: amino acid binding | 1.84E-02 |
| 61 | GO:0008375: acetylglucosaminyltransferase activity | 2.07E-02 |
| 62 | GO:0102483: scopolin beta-glucosidase activity | 2.15E-02 |
| 63 | GO:0020037: heme binding | 2.16E-02 |
| 64 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 2.31E-02 |
| 65 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.31E-02 |
| 66 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 2.56E-02 |
| 67 | GO:0008422: beta-glucosidase activity | 2.91E-02 |
| 68 | GO:0000149: SNARE binding | 2.91E-02 |
| 69 | GO:0005525: GTP binding | 3.04E-02 |
| 70 | GO:0005484: SNAP receptor activity | 3.28E-02 |
| 71 | GO:0043621: protein self-association | 3.47E-02 |
| 72 | GO:0003924: GTPase activity | 3.74E-02 |
| 73 | GO:0051287: NAD binding | 3.76E-02 |
| 74 | GO:0009055: electron carrier activity | 4.01E-02 |
| 75 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.67E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.04E-26 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 2.62E-16 |
| 4 | GO:0009570: chloroplast stroma | 4.06E-11 |
| 5 | GO:0009534: chloroplast thylakoid | 1.10E-10 |
| 6 | GO:0009941: chloroplast envelope | 2.08E-08 |
| 7 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.37E-08 |
| 8 | GO:0009579: thylakoid | 2.68E-08 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 7.84E-07 |
| 10 | GO:0010007: magnesium chelatase complex | 4.13E-06 |
| 11 | GO:0042651: thylakoid membrane | 2.82E-05 |
| 12 | GO:0031977: thylakoid lumen | 3.22E-05 |
| 13 | GO:0009547: plastid ribosome | 1.50E-04 |
| 14 | GO:0016459: myosin complex | 2.32E-04 |
| 15 | GO:0033281: TAT protein transport complex | 5.61E-04 |
| 16 | GO:0009523: photosystem II | 1.23E-03 |
| 17 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.65E-03 |
| 18 | GO:0012507: ER to Golgi transport vesicle membrane | 2.70E-03 |
| 19 | GO:0031969: chloroplast membrane | 4.79E-03 |
| 20 | GO:0032040: small-subunit processome | 5.27E-03 |
| 21 | GO:0000311: plastid large ribosomal subunit | 5.27E-03 |
| 22 | GO:0030095: chloroplast photosystem II | 6.25E-03 |
| 23 | GO:0030076: light-harvesting complex | 6.77E-03 |
| 24 | GO:0005875: microtubule associated complex | 7.30E-03 |
| 25 | GO:0009654: photosystem II oxygen evolving complex | 8.40E-03 |
| 26 | GO:0015935: small ribosomal subunit | 8.97E-03 |
| 27 | GO:0010287: plastoglobule | 9.03E-03 |
| 28 | GO:0005623: cell | 9.80E-03 |
| 29 | GO:0005840: ribosome | 1.17E-02 |
| 30 | GO:0019898: extrinsic component of membrane | 1.41E-02 |
| 31 | GO:0010319: stromule | 1.76E-02 |
| 32 | GO:0005789: endoplasmic reticulum membrane | 2.06E-02 |
| 33 | GO:0009707: chloroplast outer membrane | 2.31E-02 |
| 34 | GO:0031201: SNARE complex | 3.09E-02 |
| 35 | GO:0031902: late endosome membrane | 3.09E-02 |