GO Enrichment Analysis of Co-expressed Genes with
AT3G44990
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046471: phosphatidylglycerol metabolic process | 0.00E+00 |
| 2 | GO:0071277: cellular response to calcium ion | 5.48E-05 |
| 3 | GO:0015671: oxygen transport | 5.48E-05 |
| 4 | GO:0080051: cutin transport | 5.48E-05 |
| 5 | GO:0006094: gluconeogenesis | 8.50E-05 |
| 6 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.25E-04 |
| 7 | GO:0015908: fatty acid transport | 1.34E-04 |
| 8 | GO:0080029: cellular response to boron-containing substance levels | 1.34E-04 |
| 9 | GO:0006096: glycolytic process | 1.44E-04 |
| 10 | GO:0055114: oxidation-reduction process | 2.08E-04 |
| 11 | GO:0015714: phosphoenolpyruvate transport | 2.28E-04 |
| 12 | GO:0090391: granum assembly | 2.28E-04 |
| 13 | GO:0006081: cellular aldehyde metabolic process | 2.28E-04 |
| 14 | GO:0046713: borate transport | 3.33E-04 |
| 15 | GO:0015713: phosphoglycerate transport | 4.45E-04 |
| 16 | GO:0006021: inositol biosynthetic process | 4.45E-04 |
| 17 | GO:0010222: stem vascular tissue pattern formation | 4.45E-04 |
| 18 | GO:0015995: chlorophyll biosynthetic process | 6.07E-04 |
| 19 | GO:0010190: cytochrome b6f complex assembly | 6.92E-04 |
| 20 | GO:0009972: cytidine deamination | 6.92E-04 |
| 21 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 6.92E-04 |
| 22 | GO:0010189: vitamin E biosynthetic process | 8.25E-04 |
| 23 | GO:0010196: nonphotochemical quenching | 9.62E-04 |
| 24 | GO:1900057: positive regulation of leaf senescence | 9.62E-04 |
| 25 | GO:0009395: phospholipid catabolic process | 9.62E-04 |
| 26 | GO:0006631: fatty acid metabolic process | 9.88E-04 |
| 27 | GO:0015979: photosynthesis | 1.03E-03 |
| 28 | GO:0009642: response to light intensity | 1.11E-03 |
| 29 | GO:0009704: de-etiolation | 1.11E-03 |
| 30 | GO:0019827: stem cell population maintenance | 1.11E-03 |
| 31 | GO:0008610: lipid biosynthetic process | 1.11E-03 |
| 32 | GO:0032259: methylation | 1.34E-03 |
| 33 | GO:0019432: triglyceride biosynthetic process | 1.41E-03 |
| 34 | GO:0010206: photosystem II repair | 1.41E-03 |
| 35 | GO:0090333: regulation of stomatal closure | 1.41E-03 |
| 36 | GO:0006783: heme biosynthetic process | 1.41E-03 |
| 37 | GO:0009051: pentose-phosphate shunt, oxidative branch | 1.41E-03 |
| 38 | GO:0006098: pentose-phosphate shunt | 1.41E-03 |
| 39 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.58E-03 |
| 40 | GO:0006782: protoporphyrinogen IX biosynthetic process | 1.75E-03 |
| 41 | GO:0009773: photosynthetic electron transport in photosystem I | 1.93E-03 |
| 42 | GO:0043085: positive regulation of catalytic activity | 1.93E-03 |
| 43 | GO:0006006: glucose metabolic process | 2.30E-03 |
| 44 | GO:0010588: cotyledon vascular tissue pattern formation | 2.30E-03 |
| 45 | GO:0019253: reductive pentose-phosphate cycle | 2.49E-03 |
| 46 | GO:0009266: response to temperature stimulus | 2.49E-03 |
| 47 | GO:0010143: cutin biosynthetic process | 2.49E-03 |
| 48 | GO:0010025: wax biosynthetic process | 2.90E-03 |
| 49 | GO:0006633: fatty acid biosynthetic process | 3.12E-03 |
| 50 | GO:0030433: ubiquitin-dependent ERAD pathway | 3.77E-03 |
| 51 | GO:0006662: glycerol ether metabolic process | 4.96E-03 |
| 52 | GO:0019252: starch biosynthetic process | 5.48E-03 |
| 53 | GO:0008654: phospholipid biosynthetic process | 5.48E-03 |
| 54 | GO:0080167: response to karrikin | 6.54E-03 |
| 55 | GO:0051607: defense response to virus | 7.11E-03 |
| 56 | GO:0010027: thylakoid membrane organization | 7.40E-03 |
| 57 | GO:0045454: cell redox homeostasis | 7.82E-03 |
| 58 | GO:0016311: dephosphorylation | 8.60E-03 |
| 59 | GO:0010311: lateral root formation | 9.22E-03 |
| 60 | GO:0000160: phosphorelay signal transduction system | 9.22E-03 |
| 61 | GO:0034599: cellular response to oxidative stress | 1.09E-02 |
| 62 | GO:0005975: carbohydrate metabolic process | 1.21E-02 |
| 63 | GO:0042542: response to hydrogen peroxide | 1.22E-02 |
| 64 | GO:0051707: response to other organism | 1.26E-02 |
| 65 | GO:0000209: protein polyubiquitination | 1.29E-02 |
| 66 | GO:0009644: response to high light intensity | 1.33E-02 |
| 67 | GO:0006364: rRNA processing | 1.55E-02 |
| 68 | GO:0009736: cytokinin-activated signaling pathway | 1.55E-02 |
| 69 | GO:0009735: response to cytokinin | 1.57E-02 |
| 70 | GO:0043086: negative regulation of catalytic activity | 1.75E-02 |
| 71 | GO:0016036: cellular response to phosphate starvation | 2.80E-02 |
| 72 | GO:0009733: response to auxin | 3.90E-02 |
| 73 | GO:0042254: ribosome biogenesis | 4.07E-02 |
| 74 | GO:0009409: response to cold | 4.69E-02 |
| 75 | GO:0010200: response to chitin | 4.79E-02 |
| 76 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.79E-02 |
| 77 | GO:0044550: secondary metabolite biosynthetic process | 4.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 2 | GO:0033840: NDP-glucose-starch glucosyltransferase activity | 0.00E+00 |
| 3 | GO:0045550: geranylgeranyl reductase activity | 0.00E+00 |
| 4 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 5 | GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity | 0.00E+00 |
| 6 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 0.00E+00 |
| 7 | GO:0004332: fructose-bisphosphate aldolase activity | 8.37E-06 |
| 8 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 4.36E-05 |
| 9 | GO:0031957: very long-chain fatty acid-CoA ligase activity | 5.48E-05 |
| 10 | GO:0015168: glycerol transmembrane transporter activity | 5.48E-05 |
| 11 | GO:0015245: fatty acid transporter activity | 5.48E-05 |
| 12 | GO:0005344: oxygen transporter activity | 5.48E-05 |
| 13 | GO:0035671: enone reductase activity | 5.48E-05 |
| 14 | GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity | 5.48E-05 |
| 15 | GO:0015121: phosphoenolpyruvate:phosphate antiporter activity | 5.48E-05 |
| 16 | GO:0004565: beta-galactosidase activity | 8.50E-05 |
| 17 | GO:0004512: inositol-3-phosphate synthase activity | 1.34E-04 |
| 18 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 1.34E-04 |
| 19 | GO:0008883: glutamyl-tRNA reductase activity | 1.34E-04 |
| 20 | GO:0042389: omega-3 fatty acid desaturase activity | 1.34E-04 |
| 21 | GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity | 2.28E-04 |
| 22 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 2.28E-04 |
| 23 | GO:0004373: glycogen (starch) synthase activity | 2.28E-04 |
| 24 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 3.33E-04 |
| 25 | GO:0046715: borate transmembrane transporter activity | 3.33E-04 |
| 26 | GO:0017057: 6-phosphogluconolactonase activity | 3.33E-04 |
| 27 | GO:0009011: starch synthase activity | 4.45E-04 |
| 28 | GO:0015204: urea transmembrane transporter activity | 4.45E-04 |
| 29 | GO:0015120: phosphoglycerate transmembrane transporter activity | 4.45E-04 |
| 30 | GO:0008168: methyltransferase activity | 6.41E-04 |
| 31 | GO:0004029: aldehyde dehydrogenase (NAD) activity | 6.92E-04 |
| 32 | GO:0102391: decanoate--CoA ligase activity | 8.25E-04 |
| 33 | GO:0004126: cytidine deaminase activity | 8.25E-04 |
| 34 | GO:0003993: acid phosphatase activity | 8.75E-04 |
| 35 | GO:0050661: NADP binding | 9.50E-04 |
| 36 | GO:0004620: phospholipase activity | 9.62E-04 |
| 37 | GO:0004467: long-chain fatty acid-CoA ligase activity | 9.62E-04 |
| 38 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 1.26E-03 |
| 39 | GO:0008047: enzyme activator activity | 1.75E-03 |
| 40 | GO:0015035: protein disulfide oxidoreductase activity | 2.06E-03 |
| 41 | GO:0042802: identical protein binding | 4.34E-03 |
| 42 | GO:0047134: protein-disulfide reductase activity | 4.47E-03 |
| 43 | GO:0004791: thioredoxin-disulfide reductase activity | 5.22E-03 |
| 44 | GO:0016788: hydrolase activity, acting on ester bonds | 5.38E-03 |
| 45 | GO:0000156: phosphorelay response regulator activity | 6.27E-03 |
| 46 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 6.27E-03 |
| 47 | GO:0015250: water channel activity | 7.40E-03 |
| 48 | GO:0051287: NAD binding | 1.44E-02 |
| 49 | GO:0031625: ubiquitin protein ligase binding | 1.67E-02 |
| 50 | GO:0019825: oxygen binding | 2.45E-02 |
| 51 | GO:0046910: pectinesterase inhibitor activity | 2.80E-02 |
| 52 | GO:0015297: antiporter activity | 2.85E-02 |
| 53 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 3.49E-02 |
| 54 | GO:0005515: protein binding | 4.65E-02 |
| 55 | GO:0061630: ubiquitin protein ligase activity | 4.85E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.87E-10 |
| 2 | GO:0009534: chloroplast thylakoid | 8.62E-10 |
| 3 | GO:0009579: thylakoid | 4.31E-07 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 3.42E-06 |
| 5 | GO:0031969: chloroplast membrane | 5.97E-06 |
| 6 | GO:0009515: granal stacked thylakoid | 5.48E-05 |
| 7 | GO:0031977: thylakoid lumen | 6.42E-05 |
| 8 | GO:0048046: apoplast | 1.25E-04 |
| 9 | GO:0009569: chloroplast starch grain | 1.34E-04 |
| 10 | GO:0009897: external side of plasma membrane | 2.28E-04 |
| 11 | GO:0009941: chloroplast envelope | 1.00E-03 |
| 12 | GO:0008180: COP9 signalosome | 1.41E-03 |
| 13 | GO:0009543: chloroplast thylakoid lumen | 2.49E-03 |
| 14 | GO:0043234: protein complex | 2.90E-03 |
| 15 | GO:0009654: photosystem II oxygen evolving complex | 3.32E-03 |
| 16 | GO:0019898: extrinsic component of membrane | 5.48E-03 |
| 17 | GO:0010319: stromule | 6.83E-03 |
| 18 | GO:0009570: chloroplast stroma | 6.91E-03 |
| 19 | GO:0019005: SCF ubiquitin ligase complex | 8.91E-03 |
| 20 | GO:0016021: integral component of membrane | 1.38E-02 |
| 21 | GO:0000502: proteasome complex | 1.55E-02 |
| 22 | GO:0010287: plastoglobule | 2.25E-02 |
| 23 | GO:0005623: cell | 2.38E-02 |
| 24 | GO:0005783: endoplasmic reticulum | 2.59E-02 |
| 25 | GO:0009505: plant-type cell wall | 4.35E-02 |