co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G44870

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032260: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance	0.00E+00
2	GO:1900367: positive regulation of defense response to insect	0.00E+00
3	GO:0002764: immune response-regulating signaling pathway	0.00E+00
4	GO:0032515: negative regulation of phosphoprotein phosphatase activity	0.00E+00
5	GO:0033587: shikimate biosynthetic process	0.00E+00
6	GO:0032491: detection of molecule of fungal origin	0.00E+00
7	GO:0009268: response to pH	0.00E+00
8	GO:0032499: detection of peptidoglycan	0.00E+00
9	GO:0002752: cell surface pattern recognition receptor signaling pathway	0.00E+00
10	GO:0071327: cellular response to trehalose stimulus	0.00E+00
11	GO:2000022: regulation of jasmonic acid mediated signaling pathway	8.56E-05
12	GO:0031348: negative regulation of defense response	8.56E-05
13	GO:0031930: mitochondria-nucleus signaling pathway	1.11E-04
14	GO:0009751: response to salicylic acid	1.42E-04
15	GO:0006468: protein phosphorylation	1.68E-04
16	GO:0046256: 2,4,6-trinitrotoluene catabolic process	2.18E-04
17	GO:0006562: proline catabolic process	2.18E-04
18	GO:1901183: positive regulation of camalexin biosynthetic process	2.18E-04
19	GO:0051938: L-glutamate import	2.18E-04
20	GO:0010204: defense response signaling pathway, resistance gene-independent	2.33E-04
21	GO:0009620: response to fungus	2.67E-04
22	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	3.36E-04
23	GO:1900426: positive regulation of defense response to bacterium	3.36E-04
24	GO:0046777: protein autophosphorylation	4.33E-04
25	GO:0002240: response to molecule of oomycetes origin	4.86E-04
26	GO:0031349: positive regulation of defense response	4.86E-04
27	GO:0015865: purine nucleotide transport	4.86E-04
28	GO:0019725: cellular homeostasis	4.86E-04
29	GO:0043091: L-arginine import	4.86E-04
30	GO:0046939: nucleotide phosphorylation	4.86E-04
31	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	4.86E-04
32	GO:0010133: proline catabolic process to glutamate	4.86E-04
33	GO:0015802: basic amino acid transport	4.86E-04
34	GO:0080185: effector dependent induction by symbiont of host immune response	4.86E-04
35	GO:0010618: aerenchyma formation	4.86E-04
36	GO:1902066: regulation of cell wall pectin metabolic process	4.86E-04
37	GO:0009867: jasmonic acid mediated signaling pathway	6.61E-04
38	GO:0010150: leaf senescence	7.25E-04
39	GO:0010167: response to nitrate	7.45E-04
40	GO:0010498: proteasomal protein catabolic process	7.90E-04
41	GO:0048586: regulation of long-day photoperiodism, flowering	7.90E-04
42	GO:1901672: positive regulation of systemic acquired resistance	7.90E-04
43	GO:0032922: circadian regulation of gene expression	7.90E-04
44	GO:0034051: negative regulation of plant-type hypersensitive response	7.90E-04
45	GO:0016045: detection of bacterium	7.90E-04
46	GO:0010359: regulation of anion channel activity	7.90E-04
47	GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process	7.90E-04
48	GO:0009863: salicylic acid mediated signaling pathway	9.15E-04
49	GO:0046902: regulation of mitochondrial membrane permeability	1.13E-03
50	GO:0010104: regulation of ethylene-activated signaling pathway	1.13E-03
51	GO:0072583: clathrin-dependent endocytosis	1.13E-03
52	GO:0006537: glutamate biosynthetic process	1.13E-03
53	GO:0010731: protein glutathionylation	1.13E-03
54	GO:0071323: cellular response to chitin	1.13E-03
55	GO:0046836: glycolipid transport	1.13E-03
56	GO:0033358: UDP-L-arabinose biosynthetic process	1.50E-03
57	GO:0071219: cellular response to molecule of bacterial origin	1.50E-03
58	GO:0080142: regulation of salicylic acid biosynthetic process	1.50E-03
59	GO:0060548: negative regulation of cell death	1.50E-03
60	GO:0045227: capsule polysaccharide biosynthetic process	1.50E-03
61	GO:0018344: protein geranylgeranylation	1.91E-03
62	GO:0010225: response to UV-C	1.91E-03
63	GO:0009247: glycolipid biosynthetic process	1.91E-03
64	GO:0042742: defense response to bacterium	2.06E-03
65	GO:0007264: small GTPase mediated signal transduction	2.35E-03
66	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.35E-03
67	GO:0010337: regulation of salicylic acid metabolic process	2.35E-03
68	GO:0002238: response to molecule of fungal origin	2.35E-03
69	GO:0010942: positive regulation of cell death	2.35E-03
70	GO:0010405: arabinogalactan protein metabolic process	2.35E-03
71	GO:0006904: vesicle docking involved in exocytosis	2.82E-03
72	GO:0045926: negative regulation of growth	2.83E-03
73	GO:0009423: chorismate biosynthetic process	2.83E-03
74	GO:0010310: regulation of hydrogen peroxide metabolic process	2.83E-03
75	GO:1900056: negative regulation of leaf senescence	3.33E-03
76	GO:1900057: positive regulation of leaf senescence	3.33E-03
77	GO:0009816: defense response to bacterium, incompatible interaction	3.35E-03
78	GO:0009627: systemic acquired resistance	3.53E-03
79	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.86E-03
80	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.86E-03
81	GO:0009819: drought recovery	3.86E-03
82	GO:0030162: regulation of proteolysis	3.86E-03
83	GO:0019375: galactolipid biosynthetic process	3.86E-03
84	GO:0045010: actin nucleation	3.86E-03
85	GO:0009817: defense response to fungus, incompatible interaction	4.12E-03
86	GO:2000031: regulation of salicylic acid mediated signaling pathway	4.42E-03
87	GO:0010099: regulation of photomorphogenesis	4.42E-03
88	GO:0009932: cell tip growth	4.42E-03
89	GO:0006499: N-terminal protein myristoylation	4.55E-03
90	GO:0006470: protein dephosphorylation	4.86E-03
91	GO:0006098: pentose-phosphate shunt	5.00E-03
92	GO:0010112: regulation of systemic acquired resistance	5.00E-03
93	GO:0048354: mucilage biosynthetic process involved in seed coat development	5.62E-03
94	GO:0006887: exocytosis	6.20E-03
95	GO:0051707: response to other organism	6.73E-03
96	GO:0009089: lysine biosynthetic process via diaminopimelate	6.91E-03
97	GO:0009073: aromatic amino acid family biosynthetic process	6.91E-03
98	GO:0009414: response to water deprivation	6.92E-03
99	GO:0002213: defense response to insect	7.60E-03
100	GO:0015706: nitrate transport	7.60E-03
101	GO:0010105: negative regulation of ethylene-activated signaling pathway	7.60E-03
102	GO:0008361: regulation of cell size	7.60E-03
103	GO:0007275: multicellular organism development	7.78E-03
104	GO:0006970: response to osmotic stress	7.86E-03
105	GO:0006855: drug transmembrane transport	7.86E-03
106	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	8.15E-03
107	GO:0006829: zinc II ion transport	8.30E-03
108	GO:0006626: protein targeting to mitochondrion	8.30E-03
109	GO:0018107: peptidyl-threonine phosphorylation	8.30E-03
110	GO:0055046: microgametogenesis	8.30E-03
111	GO:0006812: cation transport	8.45E-03
112	GO:0009611: response to wounding	8.65E-03
113	GO:0034605: cellular response to heat	9.03E-03
114	GO:0002237: response to molecule of bacterial origin	9.03E-03
115	GO:0007034: vacuolar transport	9.03E-03
116	GO:0009266: response to temperature stimulus	9.03E-03
117	GO:0009809: lignin biosynthetic process	9.08E-03
118	GO:0006486: protein glycosylation	9.08E-03
119	GO:0035556: intracellular signal transduction	9.08E-03
120	GO:0009737: response to abscisic acid	9.09E-03
121	GO:0009225: nucleotide-sugar metabolic process	9.79E-03
122	GO:0046688: response to copper ion	9.79E-03
123	GO:0046854: phosphatidylinositol phosphorylation	9.79E-03
124	GO:0010200: response to chitin	9.82E-03
125	GO:0045893: positive regulation of transcription, DNA-templated	1.03E-02
126	GO:0045333: cellular respiration	1.14E-02
127	GO:0080147: root hair cell development	1.14E-02
128	GO:2000377: regulation of reactive oxygen species metabolic process	1.14E-02
129	GO:0009626: plant-type hypersensitive response	1.15E-02
130	GO:0055085: transmembrane transport	1.20E-02
131	GO:0009695: jasmonic acid biosynthetic process	1.22E-02
132	GO:0006825: copper ion transport	1.22E-02
133	GO:0003333: amino acid transmembrane transport	1.30E-02
134	GO:0018105: peptidyl-serine phosphorylation	1.33E-02
135	GO:0010017: red or far-red light signaling pathway	1.39E-02
136	GO:0016226: iron-sulfur cluster assembly	1.39E-02
137	GO:0071456: cellular response to hypoxia	1.39E-02
138	GO:0009625: response to insect	1.48E-02
139	GO:0006012: galactose metabolic process	1.48E-02
140	GO:0009561: megagametogenesis	1.57E-02
141	GO:0009306: protein secretion	1.57E-02
142	GO:0009753: response to jasmonic acid	1.69E-02
143	GO:0006885: regulation of pH	1.85E-02
144	GO:0048544: recognition of pollen	1.95E-02
145	GO:0009749: response to glucose	2.05E-02
146	GO:0009873: ethylene-activated signaling pathway	2.13E-02
147	GO:0010193: response to ozone	2.15E-02
148	GO:0016032: viral process	2.25E-02
149	GO:0019761: glucosinolate biosynthetic process	2.25E-02
150	GO:0006952: defense response	2.30E-02
151	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.51E-02
152	GO:0007165: signal transduction	2.54E-02
153	GO:0009617: response to bacterium	2.68E-02
154	GO:0001666: response to hypoxia	2.79E-02
155	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.91E-02
156	GO:0006906: vesicle fusion	3.02E-02
157	GO:0042128: nitrate assimilation	3.02E-02
158	GO:0009407: toxin catabolic process	3.62E-02
159	GO:0009631: cold acclimation	3.74E-02
160	GO:0010119: regulation of stomatal movement	3.74E-02
161	GO:0010043: response to zinc ion	3.74E-02
162	GO:0007568: aging	3.74E-02
163	GO:0009409: response to cold	3.76E-02
164	GO:0045087: innate immune response	3.99E-02
165	GO:0048366: leaf development	4.08E-02
166	GO:0006839: mitochondrial transport	4.38E-02
167	GO:0016192: vesicle-mediated transport	4.52E-02
168	GO:0009744: response to sucrose	4.78E-02
169	GO:0000209: protein polyubiquitination	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0005522: profilin binding	0.00E+00
2	GO:0004865: protein serine/threonine phosphatase inhibitor activity	0.00E+00
3	GO:0004107: chorismate synthase activity	0.00E+00
4	GO:0005212: structural constituent of eye lens	0.00E+00
5	GO:2001080: chitosan binding	0.00E+00
6	GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	0.00E+00
7	GO:0016301: kinase activity	1.60E-05
8	GO:0004674: protein serine/threonine kinase activity	2.42E-05
9	GO:0019199: transmembrane receptor protein kinase activity	3.41E-05
10	GO:1901149: salicylic acid binding	2.18E-04
11	GO:0004662: CAAX-protein geranylgeranyltransferase activity	2.18E-04
12	GO:0004657: proline dehydrogenase activity	2.18E-04
13	GO:0046481: digalactosyldiacylglycerol synthase activity	2.18E-04
14	GO:0010285: L,L-diaminopimelate aminotransferase activity	2.18E-04
15	GO:0032050: clathrin heavy chain binding	2.18E-04
16	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.18E-04
17	GO:0048531: beta-1,3-galactosyltransferase activity	4.86E-04
18	GO:0015036: disulfide oxidoreductase activity	4.86E-04
19	GO:0047364: desulfoglucosinolate sulfotransferase activity	4.86E-04
20	GO:0016531: copper chaperone activity	7.90E-04
21	GO:0046423: allene-oxide cyclase activity	7.90E-04
22	GO:0043424: protein histidine kinase binding	1.01E-03
23	GO:0019201: nucleotide kinase activity	1.13E-03
24	GO:0015181: arginine transmembrane transporter activity	1.13E-03
25	GO:0035250: UDP-galactosyltransferase activity	1.13E-03
26	GO:0015189: L-lysine transmembrane transporter activity	1.13E-03
27	GO:0017089: glycolipid transporter activity	1.13E-03
28	GO:0031625: ubiquitin protein ligase binding	1.49E-03
29	GO:0005313: L-glutamate transmembrane transporter activity	1.50E-03
30	GO:0009916: alternative oxidase activity	1.50E-03
31	GO:0050373: UDP-arabinose 4-epimerase activity	1.50E-03
32	GO:0051861: glycolipid binding	1.50E-03
33	GO:0005515: protein binding	1.71E-03
34	GO:0004040: amidase activity	1.91E-03
35	GO:0005471: ATP:ADP antiporter activity	1.91E-03
36	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.91E-03
37	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.35E-03
38	GO:0004017: adenylate kinase activity	2.83E-03
39	GO:0003978: UDP-glucose 4-epimerase activity	2.83E-03
40	GO:0004656: procollagen-proline 4-dioxygenase activity	2.83E-03
41	GO:0005524: ATP binding	3.07E-03
42	GO:0043295: glutathione binding	3.33E-03
43	GO:0052747: sinapyl alcohol dehydrogenase activity	3.86E-03
44	GO:0015238: drug transmembrane transporter activity	4.33E-03
45	GO:0008271: secondary active sulfate transmembrane transporter activity	4.42E-03
46	GO:0004430: 1-phosphatidylinositol 4-kinase activity	4.42E-03
47	GO:0015174: basic amino acid transmembrane transporter activity	5.62E-03
48	GO:0015112: nitrate transmembrane transporter activity	5.62E-03
49	GO:0004568: chitinase activity	6.25E-03
50	GO:0005543: phospholipid binding	6.91E-03
51	GO:0008559: xenobiotic-transporting ATPase activity	6.91E-03
52	GO:0045551: cinnamyl-alcohol dehydrogenase activity	7.60E-03
53	GO:0015116: sulfate transmembrane transporter activity	7.60E-03
54	GO:0008378: galactosyltransferase activity	7.60E-03
55	GO:0031072: heat shock protein binding	8.30E-03
56	GO:0005215: transporter activity	8.59E-03
57	GO:0016298: lipase activity	9.40E-03
58	GO:0008146: sulfotransferase activity	9.79E-03
59	GO:0008061: chitin binding	9.79E-03
60	GO:0031418: L-ascorbic acid binding	1.14E-02
61	GO:0003954: NADH dehydrogenase activity	1.14E-02
62	GO:0008324: cation transmembrane transporter activity	1.22E-02
63	GO:0033612: receptor serine/threonine kinase binding	1.30E-02
64	GO:0004722: protein serine/threonine phosphatase activity	1.33E-02
65	GO:0004672: protein kinase activity	1.40E-02
66	GO:0005451: monovalent cation:proton antiporter activity	1.75E-02
67	GO:0046873: metal ion transmembrane transporter activity	1.85E-02
68	GO:0015299: solute:proton antiporter activity	1.95E-02
69	GO:0010181: FMN binding	1.95E-02
70	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.09E-02
71	GO:0005509: calcium ion binding	2.14E-02
72	GO:0015297: antiporter activity	2.14E-02
73	GO:0015385: sodium:proton antiporter activity	2.36E-02
74	GO:0051015: actin filament binding	2.36E-02
75	GO:0008483: transaminase activity	2.57E-02
76	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.57E-02
77	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.85E-02
78	GO:0008375: acetylglucosaminyltransferase activity	3.02E-02
79	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.02E-02
80	GO:0004806: triglyceride lipase activity	3.14E-02
81	GO:0004683: calmodulin-dependent protein kinase activity	3.14E-02
82	GO:0046982: protein heterodimerization activity	3.41E-02
83	GO:0004842: ubiquitin-protein transferase activity	3.87E-02
84	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.99E-02
85	GO:0000149: SNARE binding	4.25E-02
86	GO:0004364: glutathione transferase activity	4.65E-02
87	GO:0005484: SNAP receptor activity	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	7.18E-06
2	GO:0005911: cell-cell junction	2.18E-04
3	GO:0005953: CAAX-protein geranylgeranyltransferase complex	2.18E-04
4	GO:0031304: intrinsic component of mitochondrial inner membrane	4.86E-04
5	GO:0031314: extrinsic component of mitochondrial inner membrane	4.86E-04
6	GO:0005901: caveola	4.86E-04
7	GO:0030139: endocytic vesicle	7.90E-04
8	GO:0005758: mitochondrial intermembrane space	9.15E-04
9	GO:0000164: protein phosphatase type 1 complex	1.91E-03
10	GO:0005743: mitochondrial inner membrane	3.14E-03
11	GO:0016021: integral component of membrane	3.99E-03
12	GO:0005740: mitochondrial envelope	6.25E-03
13	GO:0030125: clathrin vesicle coat	6.25E-03
14	GO:0070469: respiratory chain	1.22E-02
15	GO:0005770: late endosome	1.85E-02
16	GO:0005737: cytoplasm	2.17E-02
17	GO:0000145: exocyst	2.25E-02
18	GO:0005774: vacuolar membrane	2.30E-02
19	GO:0032580: Golgi cisterna membrane	2.46E-02
20	GO:0009707: chloroplast outer membrane	3.37E-02
21	GO:0000151: ubiquitin ligase complex	3.37E-02
22	GO:0019005: SCF ubiquitin ligase complex	3.37E-02
23	GO:0000325: plant-type vacuole	3.74E-02
24	GO:0000139: Golgi membrane	3.76E-02
25	GO:0000786: nucleosome	3.86E-02
26	GO:0031201: SNARE complex	4.51E-02
27	GO:0031902: late endosome membrane	4.51E-02