GO Enrichment Analysis of Co-expressed Genes with
AT3G44716
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010059: positive regulation of atrichoblast fate specification | 0.00E+00 |
| 2 | GO:0010063: positive regulation of trichoblast fate specification | 1.48E-05 |
| 3 | GO:0006432: phenylalanyl-tRNA aminoacylation | 3.88E-05 |
| 4 | GO:0080009: mRNA methylation | 3.88E-05 |
| 5 | GO:0010305: leaf vascular tissue pattern formation | 4.85E-05 |
| 6 | GO:0006164: purine nucleotide biosynthetic process | 1.05E-04 |
| 7 | GO:0031048: chromatin silencing by small RNA | 1.05E-04 |
| 8 | GO:0009647: skotomorphogenesis | 1.05E-04 |
| 9 | GO:0043572: plastid fission | 1.05E-04 |
| 10 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.05E-04 |
| 11 | GO:0010071: root meristem specification | 1.05E-04 |
| 12 | GO:0019048: modulation by virus of host morphology or physiology | 1.05E-04 |
| 13 | GO:0051567: histone H3-K9 methylation | 1.45E-04 |
| 14 | GO:0009640: photomorphogenesis | 2.14E-04 |
| 15 | GO:0042793: transcription from plastid promoter | 2.34E-04 |
| 16 | GO:0016458: gene silencing | 2.34E-04 |
| 17 | GO:0042372: phylloquinone biosynthetic process | 2.82E-04 |
| 18 | GO:0048437: floral organ development | 3.32E-04 |
| 19 | GO:0009793: embryo development ending in seed dormancy | 3.83E-04 |
| 20 | GO:0001522: pseudouridine synthesis | 3.84E-04 |
| 21 | GO:0048507: meristem development | 4.93E-04 |
| 22 | GO:0000902: cell morphogenesis | 4.93E-04 |
| 23 | GO:0006508: proteolysis | 5.92E-04 |
| 24 | GO:0009790: embryo development | 5.95E-04 |
| 25 | GO:0030422: production of siRNA involved in RNA interference | 6.08E-04 |
| 26 | GO:0043085: positive regulation of catalytic activity | 6.67E-04 |
| 27 | GO:0030048: actin filament-based movement | 7.91E-04 |
| 28 | GO:0010020: chloroplast fission | 8.55E-04 |
| 29 | GO:0009658: chloroplast organization | 1.05E-03 |
| 30 | GO:0006306: DNA methylation | 1.19E-03 |
| 31 | GO:0042127: regulation of cell proliferation | 1.41E-03 |
| 32 | GO:0006662: glycerol ether metabolic process | 1.65E-03 |
| 33 | GO:0006342: chromatin silencing | 1.65E-03 |
| 34 | GO:0051607: defense response to virus | 2.33E-03 |
| 35 | GO:0010027: thylakoid membrane organization | 2.42E-03 |
| 36 | GO:0009816: defense response to bacterium, incompatible interaction | 2.52E-03 |
| 37 | GO:0015995: chlorophyll biosynthetic process | 2.70E-03 |
| 38 | GO:0048481: plant ovule development | 2.90E-03 |
| 39 | GO:0009910: negative regulation of flower development | 3.20E-03 |
| 40 | GO:0034599: cellular response to oxidative stress | 3.50E-03 |
| 41 | GO:0006364: rRNA processing | 4.95E-03 |
| 42 | GO:0006417: regulation of translation | 5.31E-03 |
| 43 | GO:0048367: shoot system development | 5.68E-03 |
| 44 | GO:0009409: response to cold | 9.02E-03 |
| 45 | GO:0007166: cell surface receptor signaling pathway | 1.01E-02 |
| 46 | GO:0009723: response to ethylene | 1.39E-02 |
| 47 | GO:0048366: leaf development | 1.41E-02 |
| 48 | GO:0015979: photosynthesis | 1.60E-02 |
| 49 | GO:0045454: cell redox homeostasis | 1.66E-02 |
| 50 | GO:0016042: lipid catabolic process | 1.89E-02 |
| 51 | GO:0048364: root development | 1.99E-02 |
| 52 | GO:0009908: flower development | 2.70E-02 |
| 53 | GO:0009416: response to light stimulus | 2.90E-02 |
| 54 | GO:0045893: positive regulation of transcription, DNA-templated | 3.20E-02 |
| 55 | GO:0006979: response to oxidative stress | 4.82E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 2 | GO:0003937: IMP cyclohydrolase activity | 0.00E+00 |
| 3 | GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity | 0.00E+00 |
| 4 | GO:0004176: ATP-dependent peptidase activity | 1.79E-07 |
| 5 | GO:0008237: metallopeptidase activity | 1.05E-06 |
| 6 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.48E-05 |
| 7 | GO:0004826: phenylalanine-tRNA ligase activity | 3.88E-05 |
| 8 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 3.88E-05 |
| 9 | GO:0016630: protochlorophyllide reductase activity | 3.88E-05 |
| 10 | GO:0016805: dipeptidase activity | 6.95E-05 |
| 11 | GO:0004180: carboxypeptidase activity | 6.95E-05 |
| 12 | GO:0035197: siRNA binding | 1.05E-04 |
| 13 | GO:0004222: metalloendopeptidase activity | 1.41E-04 |
| 14 | GO:0016208: AMP binding | 2.34E-04 |
| 15 | GO:0016887: ATPase activity | 3.04E-04 |
| 16 | GO:0008047: enzyme activator activity | 6.08E-04 |
| 17 | GO:0000049: tRNA binding | 7.29E-04 |
| 18 | GO:0004521: endoribonuclease activity | 7.29E-04 |
| 19 | GO:0009982: pseudouridine synthase activity | 7.91E-04 |
| 20 | GO:0003774: motor activity | 8.55E-04 |
| 21 | GO:0003727: single-stranded RNA binding | 1.41E-03 |
| 22 | GO:0052689: carboxylic ester hydrolase activity | 1.42E-03 |
| 23 | GO:0047134: protein-disulfide reductase activity | 1.49E-03 |
| 24 | GO:0004791: thioredoxin-disulfide reductase activity | 1.73E-03 |
| 25 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.07E-03 |
| 26 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 2.24E-03 |
| 27 | GO:0003697: single-stranded DNA binding | 3.40E-03 |
| 28 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.95E-03 |
| 29 | GO:0005525: GTP binding | 5.42E-03 |
| 30 | GO:0015035: protein disulfide oxidoreductase activity | 6.44E-03 |
| 31 | GO:0016491: oxidoreductase activity | 8.77E-03 |
| 32 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 8.79E-03 |
| 33 | GO:0003723: RNA binding | 1.17E-02 |
| 34 | GO:0000287: magnesium ion binding | 1.24E-02 |
| 35 | GO:0016788: hydrolase activity, acting on ester bonds | 1.27E-02 |
| 36 | GO:0003682: chromatin binding | 1.31E-02 |
| 37 | GO:0003924: GTPase activity | 1.93E-02 |
| 38 | GO:0005524: ATP binding | 2.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 5.55E-08 |
| 2 | GO:0005719: nuclear euchromatin | 1.05E-04 |
| 3 | GO:0009536: plastid | 1.34E-04 |
| 4 | GO:0009941: chloroplast envelope | 1.82E-04 |
| 5 | GO:0009570: chloroplast stroma | 3.43E-04 |
| 6 | GO:0009706: chloroplast inner membrane | 4.12E-04 |
| 7 | GO:0015030: Cajal body | 5.49E-04 |
| 8 | GO:0000418: DNA-directed RNA polymerase IV complex | 6.08E-04 |
| 9 | GO:0016459: myosin complex | 6.08E-04 |
| 10 | GO:0009508: plastid chromosome | 7.91E-04 |
| 11 | GO:0005778: peroxisomal membrane | 2.24E-03 |
| 12 | GO:0010319: stromule | 2.24E-03 |
| 13 | GO:0009295: nucleoid | 2.24E-03 |
| 14 | GO:0030529: intracellular ribonucleoprotein complex | 2.42E-03 |
| 15 | GO:0005654: nucleoplasm | 7.24E-03 |
| 16 | GO:0005759: mitochondrial matrix | 8.64E-03 |
| 17 | GO:0031969: chloroplast membrane | 1.46E-02 |
| 18 | GO:0009535: chloroplast thylakoid membrane | 1.50E-02 |
| 19 | GO:0005777: peroxisome | 3.20E-02 |
| 20 | GO:0009579: thylakoid | 3.29E-02 |
| 21 | GO:0009534: chloroplast thylakoid | 3.32E-02 |
| 22 | GO:0005739: mitochondrion | 3.79E-02 |