co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G44160

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061157: mRNA destabilization	0.00E+00
2	GO:0019323: pentose catabolic process	0.00E+00
3	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
4	GO:0001778: plasma membrane repair	0.00E+00
5	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
6	GO:0007638: mechanosensory behavior	0.00E+00
7	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
8	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
9	GO:0070125: mitochondrial translational elongation	0.00E+00
10	GO:0046620: regulation of organ growth	2.81E-07
11	GO:1900865: chloroplast RNA modification	1.14E-06
12	GO:0040008: regulation of growth	1.18E-04
13	GO:0016123: xanthophyll biosynthetic process	1.66E-04
14	GO:0016554: cytidine to uridine editing	2.37E-04
15	GO:0009733: response to auxin	2.47E-04
16	GO:0048437: floral organ development	4.10E-04
17	GO:0015904: tetracycline transport	4.29E-04
18	GO:0070509: calcium ion import	4.29E-04
19	GO:0044262: cellular carbohydrate metabolic process	4.29E-04
20	GO:0043266: regulation of potassium ion transport	4.29E-04
21	GO:0010063: positive regulation of trichoblast fate specification	4.29E-04
22	GO:0010480: microsporocyte differentiation	4.29E-04
23	GO:0042759: long-chain fatty acid biosynthetic process	4.29E-04
24	GO:2000021: regulation of ion homeostasis	4.29E-04
25	GO:1902458: positive regulation of stomatal opening	4.29E-04
26	GO:2000070: regulation of response to water deprivation	5.13E-04
27	GO:0009926: auxin polar transport	5.28E-04
28	GO:0010305: leaf vascular tissue pattern formation	5.83E-04
29	GO:0009451: RNA modification	7.43E-04
30	GO:0009638: phototropism	8.83E-04
31	GO:0031425: chloroplast RNA processing	8.83E-04
32	GO:2000123: positive regulation of stomatal complex development	9.27E-04
33	GO:0060359: response to ammonium ion	9.27E-04
34	GO:0048255: mRNA stabilization	9.27E-04
35	GO:1900871: chloroplast mRNA modification	9.27E-04
36	GO:0006432: phenylalanyl-tRNA aminoacylation	9.27E-04
37	GO:0080009: mRNA methylation	9.27E-04
38	GO:0009786: regulation of asymmetric cell division	9.27E-04
39	GO:0046740: transport of virus in host, cell to cell	9.27E-04
40	GO:1903426: regulation of reactive oxygen species biosynthetic process	9.27E-04
41	GO:0009641: shade avoidance	1.03E-03
42	GO:0009416: response to light stimulus	1.10E-03
43	GO:0045910: negative regulation of DNA recombination	1.51E-03
44	GO:0033591: response to L-ascorbic acid	1.51E-03
45	GO:0043157: response to cation stress	1.51E-03
46	GO:0009658: chloroplast organization	1.53E-03
47	GO:0010628: positive regulation of gene expression	1.54E-03
48	GO:0010020: chloroplast fission	1.73E-03
49	GO:0010207: photosystem II assembly	1.73E-03
50	GO:0070588: calcium ion transmembrane transport	1.94E-03
51	GO:0009793: embryo development ending in seed dormancy	1.95E-03
52	GO:0010071: root meristem specification	2.18E-03
53	GO:0007231: osmosensory signaling pathway	2.18E-03
54	GO:0032456: endocytic recycling	2.18E-03
55	GO:0019048: modulation by virus of host morphology or physiology	2.18E-03
56	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.18E-03
57	GO:0009052: pentose-phosphate shunt, non-oxidative branch	2.18E-03
58	GO:0006612: protein targeting to membrane	2.18E-03
59	GO:0031048: chromatin silencing by small RNA	2.18E-03
60	GO:1990019: protein storage vacuole organization	2.18E-03
61	GO:0016556: mRNA modification	2.18E-03
62	GO:0046739: transport of virus in multicellular host	2.18E-03
63	GO:0043572: plastid fission	2.18E-03
64	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	2.18E-03
65	GO:0010371: regulation of gibberellin biosynthetic process	2.18E-03
66	GO:0009734: auxin-activated signaling pathway	2.36E-03
67	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.38E-03
68	GO:0042274: ribosomal small subunit biogenesis	2.93E-03
69	GO:0009765: photosynthesis, light harvesting	2.93E-03
70	GO:0033500: carbohydrate homeostasis	2.93E-03
71	GO:0051567: histone H3-K9 methylation	2.93E-03
72	GO:2000038: regulation of stomatal complex development	2.93E-03
73	GO:0009755: hormone-mediated signaling pathway	2.93E-03
74	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.48E-03
75	GO:0010438: cellular response to sulfur starvation	3.76E-03
76	GO:0010375: stomatal complex patterning	3.76E-03
77	GO:0080110: sporopollenin biosynthetic process	3.76E-03
78	GO:0016120: carotene biosynthetic process	3.76E-03
79	GO:0045487: gibberellin catabolic process	3.76E-03
80	GO:0045038: protein import into chloroplast thylakoid membrane	3.76E-03
81	GO:0048497: maintenance of floral organ identity	3.76E-03
82	GO:0009959: negative gravitropism	4.65E-03
83	GO:0009913: epidermal cell differentiation	4.65E-03
84	GO:1902456: regulation of stomatal opening	4.65E-03
85	GO:0018258: protein O-linked glycosylation via hydroxyproline	4.65E-03
86	GO:0016458: gene silencing	4.65E-03
87	GO:0010405: arabinogalactan protein metabolic process	4.65E-03
88	GO:0010182: sugar mediated signaling pathway	4.78E-03
89	GO:0006351: transcription, DNA-templated	5.42E-03
90	GO:0042372: phylloquinone biosynthetic process	5.60E-03
91	GO:0009612: response to mechanical stimulus	5.60E-03
92	GO:0009082: branched-chain amino acid biosynthetic process	5.60E-03
93	GO:0031930: mitochondria-nucleus signaling pathway	5.60E-03
94	GO:0017148: negative regulation of translation	5.60E-03
95	GO:0009099: valine biosynthetic process	5.60E-03
96	GO:0030488: tRNA methylation	5.60E-03
97	GO:0080086: stamen filament development	5.60E-03
98	GO:0010583: response to cyclopentenone	6.32E-03
99	GO:0016032: viral process	6.32E-03
100	GO:0032502: developmental process	6.32E-03
101	GO:0048528: post-embryonic root development	6.62E-03
102	GO:0030497: fatty acid elongation	6.62E-03
103	GO:0010098: suspensor development	6.62E-03
104	GO:0010444: guard mother cell differentiation	6.62E-03
105	GO:0015693: magnesium ion transport	6.62E-03
106	GO:1901657: glycosyl compound metabolic process	6.74E-03
107	GO:0009828: plant-type cell wall loosening	7.18E-03
108	GO:0048564: photosystem I assembly	7.71E-03
109	GO:0009819: drought recovery	7.71E-03
110	GO:0010439: regulation of glucosinolate biosynthetic process	7.71E-03
111	GO:0000105: histidine biosynthetic process	7.71E-03
112	GO:0009742: brassinosteroid mediated signaling pathway	7.86E-03
113	GO:0051607: defense response to virus	8.09E-03
114	GO:0010027: thylakoid membrane organization	8.57E-03
115	GO:0015996: chlorophyll catabolic process	8.84E-03
116	GO:0007186: G-protein coupled receptor signaling pathway	8.84E-03
117	GO:0010497: plasmodesmata-mediated intercellular transport	8.84E-03
118	GO:0009657: plastid organization	8.84E-03
119	GO:0009097: isoleucine biosynthetic process	8.84E-03
120	GO:0048507: meristem development	1.00E-02
121	GO:0046916: cellular transition metal ion homeostasis	1.00E-02
122	GO:0000373: Group II intron splicing	1.00E-02
123	GO:0000902: cell morphogenesis	1.00E-02
124	GO:0009098: leucine biosynthetic process	1.13E-02
125	GO:0006949: syncytium formation	1.26E-02
126	GO:0009299: mRNA transcription	1.26E-02
127	GO:0030422: production of siRNA involved in RNA interference	1.26E-02
128	GO:0048829: root cap development	1.26E-02
129	GO:0006298: mismatch repair	1.26E-02
130	GO:0005975: carbohydrate metabolic process	1.27E-02
131	GO:0006816: calcium ion transport	1.40E-02
132	GO:0009773: photosynthetic electron transport in photosystem I	1.40E-02
133	GO:0009682: induced systemic resistance	1.40E-02
134	GO:0009073: aromatic amino acid family biosynthetic process	1.40E-02
135	GO:0006415: translational termination	1.40E-02
136	GO:0048229: gametophyte development	1.40E-02
137	GO:0045037: protein import into chloroplast stroma	1.54E-02
138	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.54E-02
139	GO:0006839: mitochondrial transport	1.63E-02
140	GO:0030001: metal ion transport	1.63E-02
141	GO:0009725: response to hormone	1.69E-02
142	GO:0010588: cotyledon vascular tissue pattern formation	1.69E-02
143	GO:0030048: actin filament-based movement	1.69E-02
144	GO:0009785: blue light signaling pathway	1.69E-02
145	GO:0050826: response to freezing	1.69E-02
146	GO:0010075: regulation of meristem growth	1.69E-02
147	GO:0007166: cell surface receptor signaling pathway	1.74E-02
148	GO:0009934: regulation of meristem structural organization	1.84E-02
149	GO:0010030: positive regulation of seed germination	1.99E-02
150	GO:0000162: tryptophan biosynthetic process	2.15E-02
151	GO:0010025: wax biosynthetic process	2.15E-02
152	GO:0009664: plant-type cell wall organization	2.31E-02
153	GO:0051017: actin filament bundle assembly	2.32E-02
154	GO:0006468: protein phosphorylation	2.33E-02
155	GO:0009826: unidimensional cell growth	2.43E-02
156	GO:0007165: signal transduction	2.45E-02
157	GO:0010431: seed maturation	2.66E-02
158	GO:0006306: DNA methylation	2.66E-02
159	GO:0048511: rhythmic process	2.66E-02
160	GO:0009686: gibberellin biosynthetic process	3.02E-02
161	GO:0010082: regulation of root meristem growth	3.02E-02
162	GO:0009294: DNA mediated transformation	3.02E-02
163	GO:0009625: response to insect	3.02E-02
164	GO:0048316: seed development	3.04E-02
165	GO:0048367: shoot system development	3.04E-02
166	GO:0010584: pollen exine formation	3.20E-02
167	GO:0042127: regulation of cell proliferation	3.20E-02
168	GO:0016117: carotenoid biosynthetic process	3.39E-02
169	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.39E-02
170	GO:0010118: stomatal movement	3.58E-02
171	GO:0048653: anther development	3.58E-02
172	GO:0042631: cellular response to water deprivation	3.58E-02
173	GO:0080022: primary root development	3.58E-02
174	GO:0010087: phloem or xylem histogenesis	3.58E-02
175	GO:0009960: endosperm development	3.78E-02
176	GO:0006342: chromatin silencing	3.78E-02
177	GO:0007018: microtubule-based movement	3.98E-02
178	GO:0042752: regulation of circadian rhythm	3.98E-02
179	GO:0048825: cotyledon development	4.18E-02
180	GO:0045892: negative regulation of transcription, DNA-templated	4.23E-02
181	GO:0071554: cell wall organization or biogenesis	4.39E-02
182	GO:0009630: gravitropism	4.60E-02
183	GO:0010090: trichome morphogenesis	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
3	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
4	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
5	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
6	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
7	GO:0004519: endonuclease activity	1.24E-05
8	GO:0001872: (1->3)-beta-D-glucan binding	6.13E-05
9	GO:0050139: nicotinate-N-glucosyltransferase activity	4.29E-04
10	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	4.29E-04
11	GO:0005227: calcium activated cation channel activity	4.29E-04
12	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	4.29E-04
13	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	4.29E-04
14	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	9.27E-04
15	GO:0004750: ribulose-phosphate 3-epimerase activity	9.27E-04
16	GO:0008805: carbon-monoxide oxygenase activity	9.27E-04
17	GO:0008493: tetracycline transporter activity	9.27E-04
18	GO:0004826: phenylalanine-tRNA ligase activity	9.27E-04
19	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	9.27E-04
20	GO:1901981: phosphatidylinositol phosphate binding	9.27E-04
21	GO:0017118: lipoyltransferase activity	9.27E-04
22	GO:0045543: gibberellin 2-beta-dioxygenase activity	9.27E-04
23	GO:0043425: bHLH transcription factor binding	9.27E-04
24	GO:0004180: carboxypeptidase activity	1.51E-03
25	GO:0003913: DNA photolyase activity	1.51E-03
26	GO:0016805: dipeptidase activity	1.51E-03
27	GO:0005262: calcium channel activity	1.54E-03
28	GO:0004222: metalloendopeptidase activity	1.92E-03
29	GO:0052655: L-valine transaminase activity	2.18E-03
30	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.18E-03
31	GO:0035197: siRNA binding	2.18E-03
32	GO:0016149: translation release factor activity, codon specific	2.18E-03
33	GO:0052656: L-isoleucine transaminase activity	2.18E-03
34	GO:0043023: ribosomal large subunit binding	2.18E-03
35	GO:0052654: L-leucine transaminase activity	2.18E-03
36	GO:0003723: RNA binding	2.52E-03
37	GO:0004176: ATP-dependent peptidase activity	2.91E-03
38	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.93E-03
39	GO:0004084: branched-chain-amino-acid transaminase activity	2.93E-03
40	GO:0019199: transmembrane receptor protein kinase activity	2.93E-03
41	GO:0004871: signal transducer activity	3.35E-03
42	GO:0003727: single-stranded RNA binding	3.79E-03
43	GO:0030983: mismatched DNA binding	4.65E-03
44	GO:1990714: hydroxyproline O-galactosyltransferase activity	4.65E-03
45	GO:0004709: MAP kinase kinase kinase activity	4.65E-03
46	GO:0016208: AMP binding	4.65E-03
47	GO:0016832: aldehyde-lyase activity	5.60E-03
48	GO:0051753: mannan synthase activity	5.60E-03
49	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	5.60E-03
50	GO:0008237: metallopeptidase activity	7.62E-03
51	GO:0046914: transition metal ion binding	8.84E-03
52	GO:0003747: translation release factor activity	1.00E-02
53	GO:0102483: scopolin beta-glucosidase activity	1.01E-02
54	GO:0030247: polysaccharide binding	1.01E-02
55	GO:0052689: carboxylic ester hydrolase activity	1.03E-02
56	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.34E-02
57	GO:0003697: single-stranded DNA binding	1.43E-02
58	GO:0004521: endoribonuclease activity	1.54E-02
59	GO:0000049: tRNA binding	1.54E-02
60	GO:0008422: beta-glucosidase activity	1.56E-02
61	GO:0015095: magnesium ion transmembrane transporter activity	1.69E-02
62	GO:0031072: heat shock protein binding	1.69E-02
63	GO:0003774: motor activity	1.84E-02
64	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.84E-02
65	GO:0035091: phosphatidylinositol binding	1.99E-02
66	GO:0008146: sulfotransferase activity	1.99E-02
67	GO:0003712: transcription cofactor activity	1.99E-02
68	GO:0005528: FK506 binding	2.32E-02
69	GO:0051536: iron-sulfur cluster binding	2.32E-02
70	GO:0046983: protein dimerization activity	2.55E-02
71	GO:0016298: lipase activity	2.57E-02
72	GO:0016788: hydrolase activity, acting on ester bonds	2.61E-02
73	GO:0033612: receptor serine/threonine kinase binding	2.66E-02
74	GO:0008408: 3'-5' exonuclease activity	2.66E-02
75	GO:0003777: microtubule motor activity	2.75E-02
76	GO:0004674: protein serine/threonine kinase activity	3.20E-02
77	GO:0003756: protein disulfide isomerase activity	3.20E-02
78	GO:0004650: polygalacturonase activity	3.23E-02
79	GO:0015035: protein disulfide oxidoreductase activity	3.64E-02
80	GO:0004527: exonuclease activity	3.78E-02
81	GO:0005199: structural constituent of cell wall	3.78E-02
82	GO:0050662: coenzyme binding	3.98E-02
83	GO:0019901: protein kinase binding	4.18E-02
84	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.53E-02
85	GO:0004518: nuclease activity	4.60E-02
86	GO:0000156: phosphorelay response regulator activity	4.81E-02
87	GO:0051015: actin filament binding	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0009507: chloroplast	9.34E-09
3	GO:0032541: cortical endoplasmic reticulum	4.29E-04
4	GO:0031357: integral component of chloroplast inner membrane	9.27E-04
5	GO:0009528: plastid inner membrane	1.51E-03
6	GO:0030139: endocytic vesicle	1.51E-03
7	GO:0009508: plastid chromosome	1.54E-03
8	GO:0032585: multivesicular body membrane	2.18E-03
9	GO:0005719: nuclear euchromatin	2.18E-03
10	GO:0009941: chloroplast envelope	2.52E-03
11	GO:0009527: plastid outer membrane	2.93E-03
12	GO:0009898: cytoplasmic side of plasma membrane	2.93E-03
13	GO:0009570: chloroplast stroma	3.14E-03
14	GO:0005886: plasma membrane	3.31E-03
15	GO:0015629: actin cytoskeleton	3.48E-03
16	GO:0009986: cell surface	6.62E-03
17	GO:0010319: stromule	7.62E-03
18	GO:0009295: nucleoid	7.62E-03
19	GO:0031969: chloroplast membrane	8.87E-03
20	GO:0015030: Cajal body	1.13E-02
21	GO:0000418: DNA-directed RNA polymerase IV complex	1.26E-02
22	GO:0016459: myosin complex	1.26E-02
23	GO:0030095: chloroplast photosystem II	1.84E-02
24	GO:0043231: intracellular membrane-bounded organelle	1.85E-02
25	GO:0046658: anchored component of plasma membrane	2.09E-02
26	GO:0009536: plastid	2.18E-02
27	GO:0009654: photosystem II oxygen evolving complex	2.49E-02
28	GO:0009532: plastid stroma	2.66E-02
29	GO:0005871: kinesin complex	3.39E-02
30	GO:0009706: chloroplast inner membrane	3.54E-02
31	GO:0019898: extrinsic component of membrane	4.18E-02
32	GO:0009543: chloroplast thylakoid lumen	4.42E-02
33	GO:0005743: mitochondrial inner membrane	4.91E-02