co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G42800

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061157: mRNA destabilization	0.00E+00
2	GO:0009733: response to auxin	4.29E-09
3	GO:0009734: auxin-activated signaling pathway	1.87E-07
4	GO:0046620: regulation of organ growth	5.79E-06
5	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.57E-05
6	GO:0040008: regulation of growth	1.90E-05
7	GO:0048497: maintenance of floral organ identity	7.56E-05
8	GO:0000025: maltose catabolic process	2.65E-04
9	GO:0010493: Lewis a epitope biosynthetic process	2.65E-04
10	GO:0006438: valyl-tRNA aminoacylation	2.65E-04
11	GO:0046520: sphingoid biosynthetic process	2.65E-04
12	GO:0010480: microsporocyte differentiation	2.65E-04
13	GO:0007275: multicellular organism development	5.10E-04
14	GO:0048829: root cap development	5.20E-04
15	GO:0006423: cysteinyl-tRNA aminoacylation	5.83E-04
16	GO:0061062: regulation of nematode larval development	5.83E-04
17	GO:0009786: regulation of asymmetric cell division	5.83E-04
18	GO:0031648: protein destabilization	5.83E-04
19	GO:0005983: starch catabolic process	6.85E-04
20	GO:0010588: cotyledon vascular tissue pattern formation	7.76E-04
21	GO:2000012: regulation of auxin polar transport	7.76E-04
22	GO:1902448: positive regulation of shade avoidance	9.47E-04
23	GO:0071398: cellular response to fatty acid	9.47E-04
24	GO:0090506: axillary shoot meristem initiation	9.47E-04
25	GO:0009926: auxin polar transport	1.28E-03
26	GO:0006418: tRNA aminoacylation for protein translation	1.32E-03
27	GO:0007276: gamete generation	1.35E-03
28	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.35E-03
29	GO:0048629: trichome patterning	1.81E-03
30	GO:0045487: gibberellin catabolic process	2.31E-03
31	GO:0009107: lipoate biosynthetic process	2.31E-03
32	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.85E-03
33	GO:0009913: epidermal cell differentiation	2.85E-03
34	GO:1902456: regulation of stomatal opening	2.85E-03
35	GO:0010405: arabinogalactan protein metabolic process	2.85E-03
36	GO:0071554: cell wall organization or biogenesis	2.90E-03
37	GO:0006694: steroid biosynthetic process	3.43E-03
38	GO:0030488: tRNA methylation	3.43E-03
39	GO:0071555: cell wall organization	3.62E-03
40	GO:0006351: transcription, DNA-templated	3.78E-03
41	GO:0048437: floral organ development	4.04E-03
42	GO:0030307: positive regulation of cell growth	4.04E-03
43	GO:0006402: mRNA catabolic process	4.69E-03
44	GO:0010492: maintenance of shoot apical meristem identity	4.69E-03
45	GO:0048573: photoperiodism, flowering	4.93E-03
46	GO:0006526: arginine biosynthetic process	5.37E-03
47	GO:0051865: protein autoubiquitination	6.09E-03
48	GO:0000902: cell morphogenesis	6.09E-03
49	GO:0006355: regulation of transcription, DNA-templated	6.38E-03
50	GO:0006865: amino acid transport	6.62E-03
51	GO:0009638: phototropism	6.83E-03
52	GO:0006779: porphyrin-containing compound biosynthetic process	6.83E-03
53	GO:0005982: starch metabolic process	6.83E-03
54	GO:0006468: protein phosphorylation	7.17E-03
55	GO:0006782: protoporphyrinogen IX biosynthetic process	7.61E-03
56	GO:0009641: shade avoidance	7.61E-03
57	GO:0006949: syncytium formation	7.61E-03
58	GO:0008285: negative regulation of cell proliferation	8.42E-03
59	GO:0048229: gametophyte development	8.42E-03
60	GO:0012501: programmed cell death	9.26E-03
61	GO:0010102: lateral root morphogenesis	1.01E-02
62	GO:0009785: blue light signaling pathway	1.01E-02
63	GO:0010628: positive regulation of gene expression	1.01E-02
64	GO:0006006: glucose metabolic process	1.01E-02
65	GO:2000028: regulation of photoperiodism, flowering	1.01E-02
66	GO:0010075: regulation of meristem growth	1.01E-02
67	GO:0007034: vacuolar transport	1.10E-02
68	GO:0010223: secondary shoot formation	1.10E-02
69	GO:0009887: animal organ morphogenesis	1.10E-02
70	GO:0009934: regulation of meristem structural organization	1.10E-02
71	GO:0090351: seedling development	1.20E-02
72	GO:0006863: purine nucleobase transport	1.29E-02
73	GO:0009416: response to light stimulus	1.29E-02
74	GO:0019953: sexual reproduction	1.49E-02
75	GO:0003333: amino acid transmembrane transport	1.59E-02
76	GO:0048511: rhythmic process	1.59E-02
77	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.70E-02
78	GO:0009624: response to nematode	1.72E-02
79	GO:0045892: negative regulation of transcription, DNA-templated	1.73E-02
80	GO:0009693: ethylene biosynthetic process	1.81E-02
81	GO:0009686: gibberellin biosynthetic process	1.81E-02
82	GO:0010082: regulation of root meristem growth	1.81E-02
83	GO:0001944: vasculature development	1.81E-02
84	GO:0006284: base-excision repair	1.92E-02
85	GO:0010091: trichome branching	1.92E-02
86	GO:0042127: regulation of cell proliferation	1.92E-02
87	GO:0048653: anther development	2.15E-02
88	GO:0000271: polysaccharide biosynthetic process	2.15E-02
89	GO:0080022: primary root development	2.15E-02
90	GO:0010087: phloem or xylem histogenesis	2.15E-02
91	GO:0010118: stomatal movement	2.15E-02
92	GO:0045489: pectin biosynthetic process	2.26E-02
93	GO:0010305: leaf vascular tissue pattern formation	2.26E-02
94	GO:0006520: cellular amino acid metabolic process	2.26E-02
95	GO:0010182: sugar mediated signaling pathway	2.26E-02
96	GO:0007018: microtubule-based movement	2.38E-02
97	GO:0042752: regulation of circadian rhythm	2.38E-02
98	GO:0048825: cotyledon development	2.51E-02
99	GO:0009790: embryo development	2.52E-02
100	GO:0010583: response to cyclopentenone	2.76E-02
101	GO:0032502: developmental process	2.76E-02
102	GO:0030163: protein catabolic process	2.88E-02
103	GO:1901657: glycosyl compound metabolic process	2.88E-02
104	GO:0009567: double fertilization forming a zygote and endosperm	3.02E-02
105	GO:0019760: glucosinolate metabolic process	3.02E-02
106	GO:0006464: cellular protein modification process	3.02E-02
107	GO:0009828: plant-type cell wall loosening	3.02E-02
108	GO:0051607: defense response to virus	3.28E-02
109	GO:0010027: thylakoid membrane organization	3.42E-02
110	GO:0015995: chlorophyll biosynthetic process	3.84E-02
111	GO:0010411: xyloglucan metabolic process	3.84E-02
112	GO:0030154: cell differentiation	4.14E-02
113	GO:0010311: lateral root formation	4.28E-02
114	GO:0000160: phosphorelay signal transduction system	4.28E-02
115	GO:0009793: embryo development ending in seed dormancy	4.83E-02
116	GO:0016051: carbohydrate biosynthetic process	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0001872: (1->3)-beta-D-glucan binding	2.63E-05
3	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.65E-04
4	GO:0005227: calcium activated cation channel activity	2.65E-04
5	GO:0046920: alpha-(1->3)-fucosyltransferase activity	2.65E-04
6	GO:0004134: 4-alpha-glucanotransferase activity	2.65E-04
7	GO:0019203: carbohydrate phosphatase activity	2.65E-04
8	GO:0004832: valine-tRNA ligase activity	2.65E-04
9	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	2.65E-04
10	GO:0000170: sphingosine hydroxylase activity	2.65E-04
11	GO:0050139: nicotinate-N-glucosyltransferase activity	2.65E-04
12	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	2.65E-04
13	GO:0004817: cysteine-tRNA ligase activity	5.83E-04
14	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	5.83E-04
15	GO:0042284: sphingolipid delta-4 desaturase activity	5.83E-04
16	GO:0017118: lipoyltransferase activity	5.83E-04
17	GO:0045543: gibberellin 2-beta-dioxygenase activity	5.83E-04
18	GO:0016415: octanoyltransferase activity	5.83E-04
19	GO:0030247: polysaccharide binding	6.13E-04
20	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.47E-04
21	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.35E-03
22	GO:0033612: receptor serine/threonine kinase binding	1.44E-03
23	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.81E-03
24	GO:0019199: transmembrane receptor protein kinase activity	1.81E-03
25	GO:0004812: aminoacyl-tRNA ligase activity	2.03E-03
26	GO:0004674: protein serine/threonine kinase activity	2.10E-03
27	GO:0008725: DNA-3-methyladenine glycosylase activity	2.31E-03
28	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.85E-03
29	GO:0004709: MAP kinase kinase kinase activity	2.85E-03
30	GO:0016832: aldehyde-lyase activity	3.43E-03
31	GO:0016413: O-acetyltransferase activity	3.96E-03
32	GO:0004871: signal transducer activity	4.21E-03
33	GO:0008173: RNA methyltransferase activity	5.37E-03
34	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	5.62E-03
35	GO:0043565: sequence-specific DNA binding	5.97E-03
36	GO:0008417: fucosyltransferase activity	6.09E-03
37	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	6.09E-03
38	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	6.09E-03
39	GO:0046983: protein dimerization activity	6.39E-03
40	GO:0003700: transcription factor activity, sequence-specific DNA binding	6.41E-03
41	GO:0004672: protein kinase activity	7.69E-03
42	GO:0003725: double-stranded RNA binding	1.01E-02
43	GO:0008146: sulfotransferase activity	1.20E-02
44	GO:0008061: chitin binding	1.20E-02
45	GO:0003712: transcription cofactor activity	1.20E-02
46	GO:0004190: aspartic-type endopeptidase activity	1.20E-02
47	GO:0003777: microtubule motor activity	1.34E-02
48	GO:0015171: amino acid transmembrane transporter activity	1.34E-02
49	GO:0031418: L-ascorbic acid binding	1.39E-02
50	GO:0005345: purine nucleobase transmembrane transporter activity	1.49E-02
51	GO:0016757: transferase activity, transferring glycosyl groups	1.51E-02
52	GO:0004650: polygalacturonase activity	1.57E-02
53	GO:0004176: ATP-dependent peptidase activity	1.59E-02
54	GO:0003964: RNA-directed DNA polymerase activity	1.59E-02
55	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.70E-02
56	GO:0003723: RNA binding	1.70E-02
57	GO:0042803: protein homodimerization activity	1.80E-02
58	GO:0003727: single-stranded RNA binding	1.92E-02
59	GO:0016758: transferase activity, transferring hexosyl groups	2.10E-02
60	GO:0001085: RNA polymerase II transcription factor binding	2.26E-02
61	GO:0005199: structural constituent of cell wall	2.26E-02
62	GO:0016853: isomerase activity	2.38E-02
63	GO:0009055: electron carrier activity	2.41E-02
64	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.46E-02
65	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.63E-02
66	GO:0004518: nuclease activity	2.76E-02
67	GO:0000156: phosphorelay response regulator activity	2.88E-02
68	GO:0008017: microtubule binding	3.12E-02
69	GO:0008237: metallopeptidase activity	3.15E-02
70	GO:0005524: ATP binding	3.22E-02
71	GO:0008289: lipid binding	3.33E-02
72	GO:0005515: protein binding	3.40E-02
73	GO:0102483: scopolin beta-glucosidase activity	3.84E-02
74	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.84E-02
75	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.58E-02
76	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.58E-02
77	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0019897: extrinsic component of plasma membrane	9.47E-04
2	GO:0030139: endocytic vesicle	9.47E-04
3	GO:0032585: multivesicular body membrane	1.35E-03
4	GO:0005886: plasma membrane	1.50E-03
5	GO:0000815: ESCRT III complex	3.43E-03
6	GO:0009986: cell surface	4.04E-03
7	GO:0009501: amyloplast	4.69E-03
8	GO:0046658: anchored component of plasma membrane	8.41E-03
9	GO:0090404: pollen tube tip	8.42E-03
10	GO:0030095: chloroplast photosystem II	1.10E-02
11	GO:0005875: microtubule associated complex	1.29E-02
12	GO:0009654: photosystem II oxygen evolving complex	1.49E-02
13	GO:0009534: chloroplast thylakoid	1.71E-02
14	GO:0005871: kinesin complex	2.03E-02
15	GO:0031225: anchored component of membrane	2.50E-02
16	GO:0019898: extrinsic component of membrane	2.51E-02
17	GO:0032580: Golgi cisterna membrane	3.02E-02
18	GO:0030529: intracellular ribonucleoprotein complex	3.42E-02
19	GO:0005667: transcription factor complex	3.70E-02