co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G42790

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090400: stress-induced premature senescence	0.00E+00
2	GO:0080149: sucrose induced translational repression	0.00E+00
3	GO:0010407: non-classical arabinogalactan protein metabolic process	0.00E+00
4	GO:0002084: protein depalmitoylation	0.00E+00
5	GO:1900384: regulation of flavonol biosynthetic process	0.00E+00
6	GO:1904250: positive regulation of age-related resistance	0.00E+00
7	GO:0072722: response to amitrole	0.00E+00
8	GO:0071985: multivesicular body sorting pathway	0.00E+00
9	GO:0006886: intracellular protein transport	5.07E-05
10	GO:0071669: plant-type cell wall organization or biogenesis	1.11E-04
11	GO:0006605: protein targeting	1.43E-04
12	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.82E-04
13	GO:0010230: alternative respiration	1.82E-04
14	GO:0042964: thioredoxin reduction	1.82E-04
15	GO:0010482: regulation of epidermal cell division	1.82E-04
16	GO:0006680: glucosylceramide catabolic process	1.82E-04
17	GO:0016192: vesicle-mediated transport	2.60E-04
18	GO:0009688: abscisic acid biosynthetic process	3.05E-04
19	GO:0009805: coumarin biosynthetic process	4.10E-04
20	GO:0018315: molybdenum incorporation into molybdenum-molybdopterin complex	4.10E-04
21	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	4.10E-04
22	GO:0051252: regulation of RNA metabolic process	4.10E-04
23	GO:0015709: thiosulfate transport	4.10E-04
24	GO:0071422: succinate transmembrane transport	4.10E-04
25	GO:0010272: response to silver ion	6.69E-04
26	GO:0051091: positive regulation of sequence-specific DNA binding transcription factor activity	6.69E-04
27	GO:0044375: regulation of peroxisome size	6.69E-04
28	GO:0072661: protein targeting to plasma membrane	6.69E-04
29	GO:0006517: protein deglycosylation	6.69E-04
30	GO:0015729: oxaloacetate transport	9.55E-04
31	GO:1902584: positive regulation of response to water deprivation	1.27E-03
32	GO:0010363: regulation of plant-type hypersensitive response	1.27E-03
33	GO:0033356: UDP-L-arabinose metabolic process	1.27E-03
34	GO:0051567: histone H3-K9 methylation	1.27E-03
35	GO:0006623: protein targeting to vacuole	1.60E-03
36	GO:0006465: signal peptide processing	1.61E-03
37	GO:0045927: positive regulation of growth	1.61E-03
38	GO:0071423: malate transmembrane transport	1.61E-03
39	GO:0046283: anthocyanin-containing compound metabolic process	1.61E-03
40	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.61E-03
41	GO:0006555: methionine metabolic process	1.98E-03
42	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.98E-03
43	GO:0015031: protein transport	1.98E-03
44	GO:0035435: phosphate ion transmembrane transport	1.98E-03
45	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	1.98E-03
46	GO:0019509: L-methionine salvage from methylthioadenosine	2.38E-03
47	GO:0034389: lipid particle organization	2.38E-03
48	GO:0009082: branched-chain amino acid biosynthetic process	2.38E-03
49	GO:0017148: negative regulation of translation	2.38E-03
50	GO:0009099: valine biosynthetic process	2.38E-03
51	GO:0009554: megasporogenesis	2.38E-03
52	GO:0009627: systemic acquired resistance	2.74E-03
53	GO:0080186: developmental vegetative growth	2.80E-03
54	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.80E-03
55	GO:0008272: sulfate transport	2.80E-03
56	GO:0050829: defense response to Gram-negative bacterium	2.80E-03
57	GO:1900057: positive regulation of leaf senescence	2.80E-03
58	GO:1902074: response to salt	2.80E-03
59	GO:0006888: ER to Golgi vesicle-mediated transport	2.89E-03
60	GO:0010150: leaf senescence	2.96E-03
61	GO:0006491: N-glycan processing	3.24E-03
62	GO:0043068: positive regulation of programmed cell death	3.24E-03
63	GO:0006102: isocitrate metabolic process	3.24E-03
64	GO:0016559: peroxisome fission	3.24E-03
65	GO:0009407: toxin catabolic process	3.53E-03
66	GO:0009699: phenylpropanoid biosynthetic process	3.71E-03
67	GO:0006002: fructose 6-phosphate metabolic process	3.71E-03
68	GO:0019430: removal of superoxide radicals	3.71E-03
69	GO:0009097: isoleucine biosynthetic process	3.71E-03
70	GO:0006099: tricarboxylic acid cycle	4.23E-03
71	GO:0009098: leucine biosynthetic process	4.71E-03
72	GO:0051707: response to other organism	5.21E-03
73	GO:0000103: sulfate assimilation	5.24E-03
74	GO:0006032: chitin catabolic process	5.24E-03
75	GO:0000272: polysaccharide catabolic process	5.79E-03
76	GO:0048765: root hair cell differentiation	5.79E-03
77	GO:0009636: response to toxic substance	5.85E-03
78	GO:0045037: protein import into chloroplast stroma	6.35E-03
79	GO:0016925: protein sumoylation	6.35E-03
80	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	6.35E-03
81	GO:0010102: lateral root morphogenesis	6.94E-03
82	GO:0055046: microgametogenesis	6.94E-03
83	GO:0006417: regulation of translation	7.77E-03
84	GO:0007031: peroxisome organization	8.18E-03
85	GO:0007030: Golgi organization	8.18E-03
86	GO:0090351: seedling development	8.18E-03
87	GO:0007033: vacuole organization	8.18E-03
88	GO:0010053: root epidermal cell differentiation	8.18E-03
89	GO:0045454: cell redox homeostasis	8.52E-03
90	GO:0000162: tryptophan biosynthetic process	8.82E-03
91	GO:0034976: response to endoplasmic reticulum stress	8.82E-03
92	GO:0009620: response to fungus	9.13E-03
93	GO:0051302: regulation of cell division	1.02E-02
94	GO:0006874: cellular calcium ion homeostasis	1.02E-02
95	GO:0010026: trichome differentiation	1.02E-02
96	GO:0019915: lipid storage	1.09E-02
97	GO:0016998: cell wall macromolecule catabolic process	1.09E-02
98	GO:0009814: defense response, incompatible interaction	1.16E-02
99	GO:0019748: secondary metabolic process	1.16E-02
100	GO:0010584: pollen exine formation	1.31E-02
101	GO:0009561: megagametogenesis	1.31E-02
102	GO:0009306: protein secretion	1.31E-02
103	GO:0042147: retrograde transport, endosome to Golgi	1.38E-02
104	GO:0010118: stomatal movement	1.46E-02
105	GO:0006662: glycerol ether metabolic process	1.54E-02
106	GO:0010182: sugar mediated signaling pathway	1.54E-02
107	GO:0009851: auxin biosynthetic process	1.70E-02
108	GO:0006891: intra-Golgi vesicle-mediated transport	1.79E-02
109	GO:0051607: defense response to virus	2.23E-02
110	GO:0009615: response to virus	2.32E-02
111	GO:0010029: regulation of seed germination	2.42E-02
112	GO:0006906: vesicle fusion	2.51E-02
113	GO:0016049: cell growth	2.71E-02
114	GO:0009817: defense response to fungus, incompatible interaction	2.81E-02
115	GO:0030244: cellulose biosynthetic process	2.81E-02
116	GO:0009832: plant-type cell wall biogenesis	2.91E-02
117	GO:0006499: N-terminal protein myristoylation	3.01E-02
118	GO:0048527: lateral root development	3.11E-02
119	GO:0034599: cellular response to oxidative stress	3.43E-02
120	GO:0006839: mitochondrial transport	3.65E-02
121	GO:0006631: fatty acid metabolic process	3.76E-02
122	GO:0006887: exocytosis	3.76E-02
123	GO:0042542: response to hydrogen peroxide	3.87E-02
124	GO:0009744: response to sucrose	3.98E-02
125	GO:0000209: protein polyubiquitination	4.09E-02
126	GO:0009965: leaf morphogenesis	4.32E-02
127	GO:0007275: multicellular organism development	4.43E-02
128	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.56E-02
129	GO:0009846: pollen germination	4.68E-02
130	GO:0006629: lipid metabolic process	4.89E-02
131	GO:0006486: protein glycosylation	4.92E-02
132	GO:0009736: cytokinin-activated signaling pathway	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0102867: molybdenum cofactor sulfurtransferase activity	0.00E+00
2	GO:0008320: protein transmembrane transporter activity	1.11E-04
3	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.82E-04
4	GO:0030942: endoplasmic reticulum signal peptide binding	1.82E-04
5	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	1.82E-04
6	GO:0032266: phosphatidylinositol-3-phosphate binding	1.82E-04
7	GO:0004348: glucosylceramidase activity	1.82E-04
8	GO:0009000: selenocysteine lyase activity	1.82E-04
9	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.82E-04
10	GO:0052691: UDP-arabinopyranose mutase activity	4.10E-04
11	GO:0015117: thiosulfate transmembrane transporter activity	4.10E-04
12	GO:0048531: beta-1,3-galactosyltransferase activity	4.10E-04
13	GO:0008428: ribonuclease inhibitor activity	4.10E-04
14	GO:1901677: phosphate transmembrane transporter activity	4.10E-04
15	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	4.10E-04
16	GO:0052739: phosphatidylserine 1-acylhydrolase activity	4.10E-04
17	GO:0010297: heteropolysaccharide binding	4.10E-04
18	GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity	4.10E-04
19	GO:0008265: Mo-molybdopterin cofactor sulfurase activity	6.69E-04
20	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	6.69E-04
21	GO:0043169: cation binding	6.69E-04
22	GO:0005310: dicarboxylic acid transmembrane transporter activity	6.69E-04
23	GO:0015141: succinate transmembrane transporter activity	6.69E-04
24	GO:0004449: isocitrate dehydrogenase (NAD+) activity	9.55E-04
25	GO:0015131: oxaloacetate transmembrane transporter activity	9.55E-04
26	GO:0052656: L-isoleucine transaminase activity	9.55E-04
27	GO:0052654: L-leucine transaminase activity	9.55E-04
28	GO:0017077: oxidative phosphorylation uncoupler activity	9.55E-04
29	GO:0052655: L-valine transaminase activity	9.55E-04
30	GO:0004084: branched-chain-amino-acid transaminase activity	1.27E-03
31	GO:0016866: intramolecular transferase activity	1.27E-03
32	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.27E-03
33	GO:0004031: aldehyde oxidase activity	1.27E-03
34	GO:0050302: indole-3-acetaldehyde oxidase activity	1.27E-03
35	GO:0004791: thioredoxin-disulfide reductase activity	1.49E-03
36	GO:0008374: O-acyltransferase activity	1.61E-03
37	GO:0008948: oxaloacetate decarboxylase activity	1.61E-03
38	GO:0031386: protein tag	1.61E-03
39	GO:0030151: molybdenum ion binding	1.61E-03
40	GO:0008474: palmitoyl-(protein) hydrolase activity	1.98E-03
41	GO:0003872: 6-phosphofructokinase activity	2.80E-03
42	GO:0015140: malate transmembrane transporter activity	2.80E-03
43	GO:0008312: 7S RNA binding	3.24E-03
44	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	3.71E-03
45	GO:0004364: glutathione transferase activity	5.00E-03
46	GO:0004568: chitinase activity	5.24E-03
47	GO:0015116: sulfate transmembrane transporter activity	6.35E-03
48	GO:0008378: galactosyltransferase activity	6.35E-03
49	GO:0031072: heat shock protein binding	6.94E-03
50	GO:0005217: intracellular ligand-gated ion channel activity	8.18E-03
51	GO:0008061: chitin binding	8.18E-03
52	GO:0004970: ionotropic glutamate receptor activity	8.18E-03
53	GO:0043130: ubiquitin binding	9.48E-03
54	GO:0051536: iron-sulfur cluster binding	9.48E-03
55	GO:0015035: protein disulfide oxidoreductase activity	1.03E-02
56	GO:0016760: cellulose synthase (UDP-forming) activity	1.23E-02
57	GO:0003756: protein disulfide isomerase activity	1.31E-02
58	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.31E-02
59	GO:0005102: receptor binding	1.38E-02
60	GO:0047134: protein-disulfide reductase activity	1.38E-02
61	GO:0004518: nuclease activity	1.87E-02
62	GO:0016887: ATPase activity	1.94E-02
63	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.96E-02
64	GO:0008483: transaminase activity	2.14E-02
65	GO:0051213: dioxygenase activity	2.32E-02
66	GO:0004806: triglyceride lipase activity	2.61E-02
67	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.61E-02
68	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.81E-02
69	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.11E-02
70	GO:0050660: flavin adenine dinucleotide binding	3.11E-02
71	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.32E-02
72	GO:0003746: translation elongation factor activity	3.32E-02
73	GO:0061630: ubiquitin protein ligase activity	3.50E-02
74	GO:0000149: SNARE binding	3.54E-02
75	GO:0050661: NADP binding	3.65E-02
76	GO:0005484: SNAP receptor activity	3.98E-02
77	GO:0051537: 2 iron, 2 sulfur cluster binding	4.21E-02
78	GO:0005198: structural molecule activity	4.32E-02
79	GO:0003924: GTPase activity	4.89E-02
80	GO:0005509: calcium ion binding	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	1.11E-04
2	GO:0045252: oxoglutarate dehydrogenase complex	1.82E-04
3	GO:0000138: Golgi trans cisterna	1.82E-04
4	GO:0005789: endoplasmic reticulum membrane	2.16E-04
5	GO:0031901: early endosome membrane	2.17E-04
6	GO:0031090: organelle membrane	2.17E-04
7	GO:0000814: ESCRT II complex	4.10E-04
8	GO:0005794: Golgi apparatus	5.12E-04
9	GO:0042406: extrinsic component of endoplasmic reticulum membrane	6.69E-04
10	GO:0030130: clathrin coat of trans-Golgi network vesicle	6.69E-04
11	GO:0030132: clathrin coat of coated pit	6.69E-04
12	GO:0005783: endoplasmic reticulum	1.20E-03
13	GO:0005945: 6-phosphofructokinase complex	1.61E-03
14	GO:0032580: Golgi cisterna membrane	2.07E-03
15	GO:0030173: integral component of Golgi membrane	2.38E-03
16	GO:0005779: integral component of peroxisomal membrane	3.71E-03
17	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.71E-03
18	GO:0005811: lipid particle	3.71E-03
19	GO:0005886: plasma membrane	3.97E-03
20	GO:0030665: clathrin-coated vesicle membrane	4.71E-03
21	GO:0008540: proteasome regulatory particle, base subcomplex	4.71E-03
22	GO:0031902: late endosome membrane	4.80E-03
23	GO:0017119: Golgi transport complex	5.24E-03
24	GO:0000139: Golgi membrane	7.79E-03
25	GO:0005795: Golgi stack	8.18E-03
26	GO:0005769: early endosome	8.82E-03
27	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.31E-02
28	GO:0005770: late endosome	1.54E-02
29	GO:0009504: cell plate	1.70E-02
30	GO:0031965: nuclear membrane	1.70E-02
31	GO:0019898: extrinsic component of membrane	1.70E-02
32	GO:0016592: mediator complex	1.87E-02
33	GO:0071944: cell periphery	1.96E-02
34	GO:0005778: peroxisomal membrane	2.14E-02
35	GO:0009505: plant-type cell wall	2.30E-02
36	GO:0005788: endoplasmic reticulum lumen	2.42E-02
37	GO:0031201: SNARE complex	3.76E-02
38	GO:0000502: proteasome complex	4.92E-02