co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G33520

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070125: mitochondrial translational elongation	0.00E+00
2	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
3	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
4	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
5	GO:0000372: Group I intron splicing	0.00E+00
6	GO:0080127: fruit septum development	0.00E+00
7	GO:0000373: Group II intron splicing	2.11E-06
8	GO:0046620: regulation of organ growth	4.05E-05
9	GO:0005992: trehalose biosynthetic process	4.30E-04
10	GO:0034757: negative regulation of iron ion transport	5.83E-04
11	GO:0006438: valyl-tRNA aminoacylation	5.83E-04
12	GO:0043087: regulation of GTPase activity	5.83E-04
13	GO:0000066: mitochondrial ornithine transport	5.83E-04
14	GO:0000105: histidine biosynthetic process	8.05E-04
15	GO:0009926: auxin polar transport	1.07E-03
16	GO:0043039: tRNA aminoacylation	1.25E-03
17	GO:0010271: regulation of chlorophyll catabolic process	1.25E-03
18	GO:0006432: phenylalanyl-tRNA aminoacylation	1.25E-03
19	GO:0001736: establishment of planar polarity	1.25E-03
20	GO:0080009: mRNA methylation	1.25E-03
21	GO:0009786: regulation of asymmetric cell division	1.25E-03
22	GO:0001682: tRNA 5'-leader removal	1.25E-03
23	GO:0040008: regulation of growth	1.49E-03
24	GO:0048829: root cap development	1.61E-03
25	GO:0009451: RNA modification	1.68E-03
26	GO:0045910: negative regulation of DNA recombination	2.06E-03
27	GO:0031022: nuclear migration along microfilament	2.06E-03
28	GO:0080117: secondary growth	2.06E-03
29	GO:0051604: protein maturation	2.06E-03
30	GO:0071398: cellular response to fatty acid	2.06E-03
31	GO:0045037: protein import into chloroplast stroma	2.14E-03
32	GO:0010582: floral meristem determinacy	2.14E-03
33	GO:0009733: response to auxin	2.65E-03
34	GO:0051513: regulation of monopolar cell growth	3.00E-03
35	GO:0009102: biotin biosynthetic process	3.00E-03
36	GO:0051639: actin filament network formation	3.00E-03
37	GO:0034059: response to anoxia	3.00E-03
38	GO:0010239: chloroplast mRNA processing	3.00E-03
39	GO:0044211: CTP salvage	3.00E-03
40	GO:0009800: cinnamic acid biosynthetic process	3.00E-03
41	GO:0006424: glutamyl-tRNA aminoacylation	3.00E-03
42	GO:2000904: regulation of starch metabolic process	3.00E-03
43	GO:0010311: lateral root formation	3.27E-03
44	GO:0051017: actin filament bundle assembly	3.82E-03
45	GO:0051764: actin crosslink formation	4.04E-03
46	GO:0008295: spermidine biosynthetic process	4.04E-03
47	GO:0044206: UMP salvage	4.04E-03
48	GO:0006021: inositol biosynthetic process	4.04E-03
49	GO:0009755: hormone-mediated signaling pathway	4.04E-03
50	GO:0016123: xanthophyll biosynthetic process	5.19E-03
51	GO:0010438: cellular response to sulfur starvation	5.19E-03
52	GO:0010158: abaxial cell fate specification	5.19E-03
53	GO:0009696: salicylic acid metabolic process	5.19E-03
54	GO:0080110: sporopollenin biosynthetic process	5.19E-03
55	GO:0016131: brassinosteroid metabolic process	5.19E-03
56	GO:0009904: chloroplast accumulation movement	5.19E-03
57	GO:0009107: lipoate biosynthetic process	5.19E-03
58	GO:0009734: auxin-activated signaling pathway	5.97E-03
59	GO:0016554: cytidine to uridine editing	6.43E-03
60	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	6.43E-03
61	GO:0006559: L-phenylalanine catabolic process	6.43E-03
62	GO:0006206: pyrimidine nucleobase metabolic process	6.43E-03
63	GO:0048831: regulation of shoot system development	6.43E-03
64	GO:0003006: developmental process involved in reproduction	6.43E-03
65	GO:0009793: embryo development ending in seed dormancy	7.08E-03
66	GO:0008033: tRNA processing	7.09E-03
67	GO:0009958: positive gravitropism	7.65E-03
68	GO:0009648: photoperiodism	7.77E-03
69	GO:0031930: mitochondria-nucleus signaling pathway	7.77E-03
70	GO:0048509: regulation of meristem development	7.77E-03
71	GO:0009903: chloroplast avoidance movement	7.77E-03
72	GO:0007018: microtubule-based movement	8.23E-03
73	GO:0007166: cell surface receptor signaling pathway	8.24E-03
74	GO:0009610: response to symbiotic fungus	9.20E-03
75	GO:0010050: vegetative phase change	9.20E-03
76	GO:0010098: suspensor development	9.20E-03
77	GO:0010583: response to cyclopentenone	1.01E-02
78	GO:0009819: drought recovery	1.07E-02
79	GO:0010439: regulation of glucosinolate biosynthetic process	1.07E-02
80	GO:0070413: trehalose metabolism in response to stress	1.07E-02
81	GO:0009850: auxin metabolic process	1.07E-02
82	GO:2000070: regulation of response to water deprivation	1.07E-02
83	GO:0009231: riboflavin biosynthetic process	1.07E-02
84	GO:0009639: response to red or far red light	1.15E-02
85	GO:0071482: cellular response to light stimulus	1.23E-02
86	GO:0009827: plant-type cell wall modification	1.23E-02
87	GO:0007186: G-protein coupled receptor signaling pathway	1.23E-02
88	GO:0009657: plastid organization	1.23E-02
89	GO:0032544: plastid translation	1.23E-02
90	GO:0009658: chloroplast organization	1.31E-02
91	GO:0048507: meristem development	1.40E-02
92	GO:0006779: porphyrin-containing compound biosynthetic process	1.58E-02
93	GO:0009098: leucine biosynthetic process	1.58E-02
94	GO:0010018: far-red light signaling pathway	1.58E-02
95	GO:1900865: chloroplast RNA modification	1.58E-02
96	GO:0016311: dephosphorylation	1.71E-02
97	GO:0006298: mismatch repair	1.76E-02
98	GO:0010192: mucilage biosynthetic process	1.76E-02
99	GO:0006782: protoporphyrinogen IX biosynthetic process	1.76E-02
100	GO:0006535: cysteine biosynthetic process from serine	1.76E-02
101	GO:0009641: shade avoidance	1.76E-02
102	GO:0030244: cellulose biosynthetic process	1.80E-02
103	GO:0000160: phosphorelay signal transduction system	1.89E-02
104	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.90E-02
105	GO:0009682: induced systemic resistance	1.95E-02
106	GO:0043085: positive regulation of catalytic activity	1.95E-02
107	GO:0009750: response to fructose	1.95E-02
108	GO:0048765: root hair cell differentiation	1.95E-02
109	GO:0006790: sulfur compound metabolic process	2.15E-02
110	GO:0005983: starch catabolic process	2.15E-02
111	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.15E-02
112	GO:0006865: amino acid transport	2.19E-02
113	GO:0009867: jasmonic acid mediated signaling pathway	2.29E-02
114	GO:0009691: cytokinin biosynthetic process	2.36E-02
115	GO:0048467: gynoecium development	2.57E-02
116	GO:0010020: chloroplast fission	2.57E-02
117	GO:0080188: RNA-directed DNA methylation	2.79E-02
118	GO:0046854: phosphatidylinositol phosphorylation	2.79E-02
119	GO:0000162: tryptophan biosynthetic process	3.01E-02
120	GO:0042753: positive regulation of circadian rhythm	3.01E-02
121	GO:0006863: purine nucleobase transport	3.01E-02
122	GO:0009833: plant-type primary cell wall biogenesis	3.01E-02
123	GO:0019344: cysteine biosynthetic process	3.24E-02
124	GO:0030150: protein import into mitochondrial matrix	3.24E-02
125	GO:0007010: cytoskeleton organization	3.24E-02
126	GO:0006289: nucleotide-excision repair	3.24E-02
127	GO:0009636: response to toxic substance	3.32E-02
128	GO:0005975: carbohydrate metabolic process	3.36E-02
129	GO:0006418: tRNA aminoacylation for protein translation	3.48E-02
130	GO:0006306: DNA methylation	3.72E-02
131	GO:0003333: amino acid transmembrane transport	3.72E-02
132	GO:0006364: rRNA processing	3.97E-02
133	GO:0016226: iron-sulfur cluster assembly	3.97E-02
134	GO:0035428: hexose transmembrane transport	3.97E-02
135	GO:0009736: cytokinin-activated signaling pathway	3.97E-02
136	GO:0007005: mitochondrion organization	3.97E-02
137	GO:0009693: ethylene biosynthetic process	4.22E-02
138	GO:0071215: cellular response to abscisic acid stimulus	4.22E-02
139	GO:0009686: gibberellin biosynthetic process	4.22E-02
140	GO:0010082: regulation of root meristem growth	4.22E-02
141	GO:0009625: response to insect	4.22E-02
142	GO:0010584: pollen exine formation	4.48E-02
143	GO:0006284: base-excision repair	4.48E-02
144	GO:0016117: carotenoid biosynthetic process	4.74E-02
145	GO:0070417: cellular response to cold	4.74E-02
146	GO:0048316: seed development	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
2	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
3	GO:0004401: histidinol-phosphatase activity	0.00E+00
4	GO:0008710: 8-amino-7-oxononanoate synthase activity	0.00E+00
5	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
6	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
7	GO:0008805: carbon-monoxide oxygenase activity	1.48E-05
8	GO:0001872: (1->3)-beta-D-glucan binding	1.04E-04
9	GO:0004805: trehalose-phosphatase activity	1.27E-04
10	GO:0003723: RNA binding	1.31E-04
11	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	5.83E-04
12	GO:0005227: calcium activated cation channel activity	5.83E-04
13	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	5.83E-04
14	GO:0005290: L-histidine transmembrane transporter activity	5.83E-04
15	GO:0004818: glutamate-tRNA ligase activity	5.83E-04
16	GO:0052381: tRNA dimethylallyltransferase activity	5.83E-04
17	GO:0008395: steroid hydroxylase activity	5.83E-04
18	GO:0004832: valine-tRNA ligase activity	5.83E-04
19	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	5.83E-04
20	GO:0010347: L-galactose-1-phosphate phosphatase activity	5.83E-04
21	GO:0004519: endonuclease activity	1.06E-03
22	GO:0016415: octanoyltransferase activity	1.25E-03
23	GO:0004047: aminomethyltransferase activity	1.25E-03
24	GO:0004766: spermidine synthase activity	1.25E-03
25	GO:0052832: inositol monophosphate 3-phosphatase activity	1.25E-03
26	GO:0008934: inositol monophosphate 1-phosphatase activity	1.25E-03
27	GO:0052833: inositol monophosphate 4-phosphatase activity	1.25E-03
28	GO:0000064: L-ornithine transmembrane transporter activity	1.25E-03
29	GO:0004826: phenylalanine-tRNA ligase activity	1.25E-03
30	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.25E-03
31	GO:0050736: O-malonyltransferase activity	1.25E-03
32	GO:0019156: isoamylase activity	1.25E-03
33	GO:0009884: cytokinin receptor activity	1.25E-03
34	GO:0050017: L-3-cyanoalanine synthase activity	1.25E-03
35	GO:0017118: lipoyltransferase activity	1.25E-03
36	GO:0003852: 2-isopropylmalate synthase activity	1.25E-03
37	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.94E-03
38	GO:0045548: phenylalanine ammonia-lyase activity	2.06E-03
39	GO:0003913: DNA photolyase activity	2.06E-03
40	GO:0004148: dihydrolipoyl dehydrogenase activity	2.06E-03
41	GO:0005034: osmosensor activity	2.06E-03
42	GO:0016707: gibberellin 3-beta-dioxygenase activity	2.06E-03
43	GO:0000049: tRNA binding	2.14E-03
44	GO:0015189: L-lysine transmembrane transporter activity	3.00E-03
45	GO:0015181: arginine transmembrane transporter activity	3.00E-03
46	GO:0017172: cysteine dioxygenase activity	3.00E-03
47	GO:0080031: methyl salicylate esterase activity	3.00E-03
48	GO:0005096: GTPase activator activity	3.27E-03
49	GO:0031418: L-ascorbic acid binding	3.82E-03
50	GO:0004845: uracil phosphoribosyltransferase activity	4.04E-03
51	GO:0010011: auxin binding	4.04E-03
52	GO:0010328: auxin influx transmembrane transporter activity	4.04E-03
53	GO:0019199: transmembrane receptor protein kinase activity	4.04E-03
54	GO:0070628: proteasome binding	4.04E-03
55	GO:0008725: DNA-3-methyladenine glycosylase activity	5.19E-03
56	GO:0005471: ATP:ADP antiporter activity	5.19E-03
57	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	6.03E-03
58	GO:0030983: mismatched DNA binding	6.43E-03
59	GO:0080030: methyl indole-3-acetate esterase activity	6.43E-03
60	GO:0004526: ribonuclease P activity	6.43E-03
61	GO:0004709: MAP kinase kinase kinase activity	6.43E-03
62	GO:0031593: polyubiquitin binding	6.43E-03
63	GO:0004556: alpha-amylase activity	6.43E-03
64	GO:0042803: protein homodimerization activity	7.62E-03
65	GO:0016301: kinase activity	7.71E-03
66	GO:0004124: cysteine synthase activity	7.77E-03
67	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	7.77E-03
68	GO:0016832: aldehyde-lyase activity	7.77E-03
69	GO:0004849: uridine kinase activity	7.77E-03
70	GO:0004656: procollagen-proline 4-dioxygenase activity	7.77E-03
71	GO:0019900: kinase binding	7.77E-03
72	GO:0009881: photoreceptor activity	9.20E-03
73	GO:0043022: ribosome binding	1.07E-02
74	GO:0051015: actin filament binding	1.08E-02
75	GO:0003684: damaged DNA binding	1.15E-02
76	GO:0016413: O-acetyltransferase activity	1.30E-02
77	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.40E-02
78	GO:0030247: polysaccharide binding	1.62E-02
79	GO:0008047: enzyme activator activity	1.76E-02
80	GO:0004673: protein histidine kinase activity	1.76E-02
81	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.95E-02
82	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.09E-02
83	GO:0009982: pseudouridine synthase activity	2.36E-02
84	GO:0015266: protein channel activity	2.36E-02
85	GO:0000155: phosphorelay sensor kinase activity	2.36E-02
86	GO:0003993: acid phosphatase activity	2.39E-02
87	GO:0005525: GTP binding	2.43E-02
88	GO:0008061: chitin binding	2.79E-02
89	GO:0003712: transcription cofactor activity	2.79E-02
90	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	3.01E-02
91	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	3.01E-02
92	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	3.01E-02
93	GO:0043621: protein self-association	3.19E-02
94	GO:0043130: ubiquitin binding	3.24E-02
95	GO:0005528: FK506 binding	3.24E-02
96	GO:0008134: transcription factor binding	3.24E-02
97	GO:0051087: chaperone binding	3.48E-02
98	GO:0043424: protein histidine kinase binding	3.48E-02
99	GO:0005345: purine nucleobase transmembrane transporter activity	3.48E-02
100	GO:0004707: MAP kinase activity	3.72E-02
101	GO:0004176: ATP-dependent peptidase activity	3.72E-02
102	GO:0003964: RNA-directed DNA polymerase activity	3.72E-02
103	GO:0016740: transferase activity	3.77E-02
104	GO:0016760: cellulose synthase (UDP-forming) activity	4.22E-02
105	GO:0003777: microtubule motor activity	4.39E-02
106	GO:0015171: amino acid transmembrane transporter activity	4.39E-02
107	GO:0004812: aminoacyl-tRNA ligase activity	4.74E-02
108	GO:0047134: protein-disulfide reductase activity	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0035452: extrinsic component of plastid membrane	0.00E+00
2	GO:0000408: EKC/KEOPS complex	0.00E+00
3	GO:0009537: proplastid	0.00E+00
4	GO:0009349: riboflavin synthase complex	0.00E+00
5	GO:0009507: chloroplast	3.72E-07
6	GO:0009986: cell surface	6.46E-04
7	GO:0009569: chloroplast starch grain	1.25E-03
8	GO:0009513: etioplast	1.25E-03
9	GO:0009509: chromoplast	2.06E-03
10	GO:0030139: endocytic vesicle	2.06E-03
11	GO:0032585: multivesicular body membrane	3.00E-03
12	GO:0032432: actin filament bundle	3.00E-03
13	GO:0009707: chloroplast outer membrane	3.07E-03
14	GO:0009526: plastid envelope	4.04E-03
15	GO:0055035: plastid thylakoid membrane	5.19E-03
16	GO:0005759: mitochondrial matrix	5.82E-03
17	GO:0005871: kinesin complex	6.55E-03
18	GO:0009570: chloroplast stroma	6.96E-03
19	GO:0009941: chloroplast envelope	1.06E-02
20	GO:0009501: amyloplast	1.07E-02
21	GO:0031305: integral component of mitochondrial inner membrane	1.07E-02
22	GO:0030529: intracellular ribonucleoprotein complex	1.38E-02
23	GO:0005886: plasma membrane	1.40E-02
24	GO:0031969: chloroplast membrane	1.81E-02
25	GO:0005623: cell	1.83E-02
26	GO:0005884: actin filament	1.95E-02
27	GO:0005578: proteinaceous extracellular matrix	2.36E-02
28	GO:0016602: CCAAT-binding factor complex	2.36E-02
29	GO:0009574: preprophase band	2.36E-02
30	GO:0030095: chloroplast photosystem II	2.57E-02
31	GO:0000419: DNA-directed RNA polymerase V complex	3.01E-02
32	GO:0005856: cytoskeleton	3.32E-02
33	GO:0009535: chloroplast thylakoid membrane	3.37E-02
34	GO:0009654: photosystem II oxygen evolving complex	3.48E-02
35	GO:0009532: plastid stroma	3.72E-02
36	GO:0046658: anchored component of plasma membrane	3.76E-02
37	GO:0015629: actin cytoskeleton	4.22E-02
38	GO:0005744: mitochondrial inner membrane presequence translocase complex	4.48E-02