co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G32930

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000372: Group I intron splicing	0.00E+00
2	GO:0043972: histone H3-K23 acetylation	0.00E+00
3	GO:0032212: positive regulation of telomere maintenance via telomerase	0.00E+00
4	GO:0032206: positive regulation of telomere maintenance	0.00E+00
5	GO:0046486: glycerolipid metabolic process	0.00E+00
6	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
7	GO:0070125: mitochondrial translational elongation	0.00E+00
8	GO:0044154: histone H3-K14 acetylation	0.00E+00
9	GO:0009793: embryo development ending in seed dormancy	1.14E-04
10	GO:0009451: RNA modification	2.67E-04
11	GO:0043087: regulation of GTPase activity	2.94E-04
12	GO:0006436: tryptophanyl-tRNA aminoacylation	2.94E-04
13	GO:0051013: microtubule severing	2.94E-04
14	GO:0034757: negative regulation of iron ion transport	2.94E-04
15	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.94E-04
16	GO:0051171: regulation of nitrogen compound metabolic process	2.94E-04
17	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.94E-04
18	GO:0008153: para-aminobenzoic acid biosynthetic process	2.94E-04
19	GO:0043971: histone H3-K18 acetylation	2.94E-04
20	GO:0019478: D-amino acid catabolic process	2.94E-04
21	GO:0000373: Group II intron splicing	4.36E-04
22	GO:0010271: regulation of chlorophyll catabolic process	6.45E-04
23	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	6.45E-04
24	GO:0001736: establishment of planar polarity	6.45E-04
25	GO:0043039: tRNA aminoacylation	6.45E-04
26	GO:0006650: glycerophospholipid metabolic process	6.45E-04
27	GO:0030029: actin filament-based process	1.04E-03
28	GO:0045910: negative regulation of DNA recombination	1.04E-03
29	GO:0046168: glycerol-3-phosphate catabolic process	1.04E-03
30	GO:0080117: secondary growth	1.04E-03
31	GO:0009825: multidimensional cell growth	1.13E-03
32	GO:0010255: glucose mediated signaling pathway	1.50E-03
33	GO:0045017: glycerolipid biosynthetic process	1.50E-03
34	GO:0051513: regulation of monopolar cell growth	1.50E-03
35	GO:0051639: actin filament network formation	1.50E-03
36	GO:0034059: response to anoxia	1.50E-03
37	GO:0006072: glycerol-3-phosphate metabolic process	1.50E-03
38	GO:0010306: rhamnogalacturonan II biosynthetic process	1.50E-03
39	GO:0006418: tRNA aminoacylation for protein translation	1.53E-03
40	GO:0009926: auxin polar transport	1.56E-03
41	GO:0009956: radial pattern formation	2.01E-03
42	GO:0051781: positive regulation of cell division	2.01E-03
43	GO:0051764: actin crosslink formation	2.01E-03
44	GO:0015846: polyamine transport	2.01E-03
45	GO:0010236: plastoquinone biosynthetic process	2.56E-03
46	GO:0031365: N-terminal protein amino acid modification	2.56E-03
47	GO:0010158: abaxial cell fate specification	2.56E-03
48	GO:0009696: salicylic acid metabolic process	2.56E-03
49	GO:0080110: sporopollenin biosynthetic process	2.56E-03
50	GO:0048868: pollen tube development	2.74E-03
51	GO:0009958: positive gravitropism	2.74E-03
52	GO:0009734: auxin-activated signaling pathway	3.02E-03
53	GO:0016554: cytidine to uridine editing	3.16E-03
54	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.16E-03
55	GO:0048831: regulation of shoot system development	3.16E-03
56	GO:0009942: longitudinal axis specification	3.81E-03
57	GO:0048509: regulation of meristem development	3.81E-03
58	GO:0046654: tetrahydrofolate biosynthetic process	3.81E-03
59	GO:0048444: floral organ morphogenesis	3.81E-03
60	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.81E-03
61	GO:0015693: magnesium ion transport	4.49E-03
62	GO:0009610: response to symbiotic fungus	4.49E-03
63	GO:0010050: vegetative phase change	4.49E-03
64	GO:0009850: auxin metabolic process	5.21E-03
65	GO:0048564: photosystem I assembly	5.21E-03
66	GO:0009627: systemic acquired resistance	5.45E-03
67	GO:0032544: plastid translation	5.98E-03
68	GO:0007389: pattern specification process	5.98E-03
69	GO:0044030: regulation of DNA methylation	5.98E-03
70	GO:0009657: plastid organization	5.98E-03
71	GO:0019430: removal of superoxide radicals	5.98E-03
72	GO:0000160: phosphorelay signal transduction system	6.69E-03
73	GO:0045490: pectin catabolic process	7.15E-03
74	GO:0009910: negative regulation of flower development	7.37E-03
75	GO:0008202: steroid metabolic process	7.60E-03
76	GO:0016573: histone acetylation	7.60E-03
77	GO:0000723: telomere maintenance	7.60E-03
78	GO:1900865: chloroplast RNA modification	7.60E-03
79	GO:0010380: regulation of chlorophyll biosynthetic process	7.60E-03
80	GO:0016571: histone methylation	7.60E-03
81	GO:0006535: cysteine biosynthetic process from serine	8.48E-03
82	GO:0048829: root cap development	8.48E-03
83	GO:0006298: mismatch repair	8.48E-03
84	GO:0019538: protein metabolic process	8.48E-03
85	GO:0009750: response to fructose	9.38E-03
86	GO:0048765: root hair cell differentiation	9.38E-03
87	GO:0045037: protein import into chloroplast stroma	1.03E-02
88	GO:0010582: floral meristem determinacy	1.03E-02
89	GO:0010540: basipetal auxin transport	1.23E-02
90	GO:0009266: response to temperature stimulus	1.23E-02
91	GO:0009934: regulation of meristem structural organization	1.23E-02
92	GO:0010020: chloroplast fission	1.23E-02
93	GO:0009933: meristem structural organization	1.23E-02
94	GO:0010207: photosystem II assembly	1.23E-02
95	GO:0080188: RNA-directed DNA methylation	1.33E-02
96	GO:0009736: cytokinin-activated signaling pathway	1.41E-02
97	GO:0051017: actin filament bundle assembly	1.55E-02
98	GO:0006289: nucleotide-excision repair	1.55E-02
99	GO:0019344: cysteine biosynthetic process	1.55E-02
100	GO:0006338: chromatin remodeling	1.55E-02
101	GO:0010187: negative regulation of seed germination	1.55E-02
102	GO:0010073: meristem maintenance	1.66E-02
103	GO:0051302: regulation of cell division	1.66E-02
104	GO:0043622: cortical microtubule organization	1.66E-02
105	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.71E-02
106	GO:0048316: seed development	1.72E-02
107	GO:0003333: amino acid transmembrane transport	1.78E-02
108	GO:0009740: gibberellic acid mediated signaling pathway	1.89E-02
109	GO:0035428: hexose transmembrane transport	1.90E-02
110	GO:0016226: iron-sulfur cluster assembly	1.90E-02
111	GO:0009624: response to nematode	2.01E-02
112	GO:0071215: cellular response to abscisic acid stimulus	2.02E-02
113	GO:0010584: pollen exine formation	2.14E-02
114	GO:0006284: base-excision repair	2.14E-02
115	GO:0010091: trichome branching	2.14E-02
116	GO:0016117: carotenoid biosynthetic process	2.27E-02
117	GO:0070417: cellular response to cold	2.27E-02
118	GO:0010087: phloem or xylem histogenesis	2.40E-02
119	GO:0000226: microtubule cytoskeleton organization	2.40E-02
120	GO:0046323: glucose import	2.53E-02
121	GO:0010305: leaf vascular tissue pattern formation	2.53E-02
122	GO:0009749: response to glucose	2.80E-02
123	GO:0008654: phospholipid biosynthetic process	2.80E-02
124	GO:0002229: defense response to oomycetes	2.94E-02
125	GO:0007264: small GTPase mediated signal transduction	3.08E-02
126	GO:0010583: response to cyclopentenone	3.08E-02
127	GO:0006633: fatty acid biosynthetic process	3.17E-02
128	GO:0040008: regulation of growth	3.32E-02
129	GO:0010252: auxin homeostasis	3.37E-02
130	GO:0016126: sterol biosynthetic process	3.82E-02
131	GO:0010029: regulation of seed germination	3.97E-02
132	GO:0010411: xyloglucan metabolic process	4.29E-02
133	GO:0018298: protein-chromophore linkage	4.61E-02
134	GO:0009817: defense response to fungus, incompatible interaction	4.61E-02
135	GO:0048481: plant ovule development	4.61E-02
136	GO:0009832: plant-type cell wall biogenesis	4.77E-02
137	GO:0010311: lateral root formation	4.77E-02
138	GO:0006811: ion transport	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0008696: 4-amino-4-deoxychorismate lyase activity	0.00E+00
2	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
3	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
4	GO:0047810: D-alanine:2-oxoglutarate aminotransferase activity	0.00E+00
5	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
6	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
7	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
8	GO:0019808: polyamine binding	0.00E+00
9	GO:0004519: endonuclease activity	8.89E-05
10	GO:0003723: RNA binding	1.19E-04
11	GO:0030570: pectate lyase activity	1.82E-04
12	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.94E-04
13	GO:0004830: tryptophan-tRNA ligase activity	2.94E-04
14	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.94E-04
15	GO:0004831: tyrosine-tRNA ligase activity	2.94E-04
16	GO:0008568: microtubule-severing ATPase activity	2.94E-04
17	GO:0050017: L-3-cyanoalanine synthase activity	6.45E-04
18	GO:0004047: aminomethyltransferase activity	6.45E-04
19	GO:0008805: carbon-monoxide oxygenase activity	6.45E-04
20	GO:0009884: cytokinin receptor activity	6.45E-04
21	GO:0016805: dipeptidase activity	1.04E-03
22	GO:0005034: osmosensor activity	1.04E-03
23	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.04E-03
24	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.04E-03
25	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	1.04E-03
26	GO:0003913: DNA photolyase activity	1.04E-03
27	GO:0080031: methyl salicylate esterase activity	1.50E-03
28	GO:0000254: C-4 methylsterol oxidase activity	1.50E-03
29	GO:0043047: single-stranded telomeric DNA binding	1.50E-03
30	GO:0043424: protein histidine kinase binding	1.53E-03
31	GO:0010011: auxin binding	2.01E-03
32	GO:0010328: auxin influx transmembrane transporter activity	2.01E-03
33	GO:0010385: double-stranded methylated DNA binding	2.01E-03
34	GO:0070628: proteasome binding	2.01E-03
35	GO:0004812: aminoacyl-tRNA ligase activity	2.35E-03
36	GO:0005471: ATP:ADP antiporter activity	2.56E-03
37	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.56E-03
38	GO:0008725: DNA-3-methyladenine glycosylase activity	2.56E-03
39	GO:0030983: mismatched DNA binding	3.16E-03
40	GO:0080030: methyl indole-3-acetate esterase activity	3.16E-03
41	GO:0004784: superoxide dismutase activity	3.16E-03
42	GO:0031593: polyubiquitin binding	3.16E-03
43	GO:0005525: GTP binding	3.26E-03
44	GO:0019900: kinase binding	3.81E-03
45	GO:0004124: cysteine synthase activity	3.81E-03
46	GO:0003684: damaged DNA binding	4.09E-03
47	GO:0008235: metalloexopeptidase activity	4.49E-03
48	GO:0042162: telomeric DNA binding	4.49E-03
49	GO:0009881: photoreceptor activity	4.49E-03
50	GO:0019899: enzyme binding	4.49E-03
51	GO:0016829: lyase activity	5.24E-03
52	GO:0008142: oxysterol binding	5.98E-03
53	GO:0005096: GTPase activator activity	6.69E-03
54	GO:0003924: GTPase activity	6.81E-03
55	GO:0009672: auxin:proton symporter activity	7.60E-03
56	GO:0004673: protein histidine kinase activity	8.48E-03
57	GO:0008327: methyl-CpG binding	9.38E-03
58	GO:0004177: aminopeptidase activity	9.38E-03
59	GO:0004161: dimethylallyltranstransferase activity	9.38E-03
60	GO:0015095: magnesium ion transmembrane transporter activity	1.13E-02
61	GO:0000155: phosphorelay sensor kinase activity	1.13E-02
62	GO:0043621: protein self-association	1.13E-02
63	GO:0035091: phosphatidylinositol binding	1.13E-02
64	GO:0010329: auxin efflux transmembrane transporter activity	1.13E-02
65	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.44E-02
66	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.44E-02
67	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.44E-02
68	GO:0043130: ubiquitin binding	1.55E-02
69	GO:0051087: chaperone binding	1.66E-02
70	GO:0004402: histone acetyltransferase activity	2.40E-02
71	GO:0019843: rRNA binding	2.52E-02
72	GO:0008536: Ran GTPase binding	2.53E-02
73	GO:0001085: RNA polymerase II transcription factor binding	2.53E-02
74	GO:0050662: coenzyme binding	2.66E-02
75	GO:0010181: FMN binding	2.66E-02
76	GO:0005355: glucose transmembrane transporter activity	2.66E-02
77	GO:0019901: protein kinase binding	2.80E-02
78	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.94E-02
79	GO:0015144: carbohydrate transmembrane transporter activity	3.02E-02
80	GO:0003676: nucleic acid binding	3.08E-02
81	GO:0000156: phosphorelay response regulator activity	3.22E-02
82	GO:0051015: actin filament binding	3.22E-02
83	GO:0005351: sugar:proton symporter activity	3.40E-02
84	GO:0005200: structural constituent of cytoskeleton	3.51E-02
85	GO:0008237: metallopeptidase activity	3.51E-02
86	GO:0008017: microtubule binding	3.64E-02
87	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.29E-02
88	GO:0004806: triglyceride lipase activity	4.29E-02
89	GO:0004721: phosphoprotein phosphatase activity	4.29E-02
90	GO:0042802: identical protein binding	4.41E-02
91	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0035452: extrinsic component of plastid membrane	0.00E+00
2	GO:0042597: periplasmic space	0.00E+00
3	GO:0009507: chloroplast	6.31E-08
4	GO:0010370: perinucleolar chromocenter	2.94E-04
5	GO:0009570: chloroplast stroma	4.75E-04
6	GO:0005697: telomerase holoenzyme complex	6.45E-04
7	GO:0009941: chloroplast envelope	1.10E-03
8	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.50E-03
9	GO:0042646: plastid nucleoid	1.50E-03
10	GO:0032432: actin filament bundle	1.50E-03
11	GO:0009532: plastid stroma	1.68E-03
12	GO:0009986: cell surface	4.49E-03
13	GO:0030529: intracellular ribonucleoprotein complex	4.88E-03
14	GO:0000784: nuclear chromosome, telomeric region	5.98E-03
15	GO:0046930: pore complex	5.98E-03
16	GO:0005720: nuclear heterochromatin	6.77E-03
17	GO:0042644: chloroplast nucleoid	6.77E-03
18	GO:0009536: plastid	7.32E-03
19	GO:0005884: actin filament	9.38E-03
20	GO:0009574: preprophase band	1.13E-02
21	GO:0016602: CCAAT-binding factor complex	1.13E-02
22	GO:0005874: microtubule	1.57E-02
23	GO:0031969: chloroplast membrane	1.64E-02
24	GO:0031965: nuclear membrane	2.80E-02
25	GO:0005759: mitochondrial matrix	3.17E-02
26	GO:0009295: nucleoid	3.51E-02
27	GO:0005667: transcription factor complex	4.13E-02
28	GO:0009707: chloroplast outer membrane	4.61E-02