Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G29670

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0045176: apical protein localization0.00E+00
2GO:0071000: response to magnetism0.00E+00
3GO:0009583: detection of light stimulus0.00E+00
4GO:0000372: Group I intron splicing0.00E+00
5GO:0001778: plasma membrane repair0.00E+00
6GO:0080127: fruit septum development0.00E+00
7GO:1900037: regulation of cellular response to hypoxia0.00E+00
8GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
9GO:1905255: regulation of RNA binding transcription factor activity0.00E+00
10GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
11GO:0006573: valine metabolic process0.00E+00
12GO:0046620: regulation of organ growth5.34E-05
13GO:0040008: regulation of growth9.62E-05
14GO:0000373: Group II intron splicing9.93E-05
15GO:0009926: auxin polar transport2.52E-04
16GO:0009734: auxin-activated signaling pathway2.59E-04
17GO:0010438: cellular response to sulfur starvation3.24E-04
18GO:0005992: trehalose biosynthetic process5.38E-04
19GO:0009733: response to auxin5.94E-04
20GO:0009082: branched-chain amino acid biosynthetic process5.99E-04
21GO:0009099: valine biosynthetic process5.99E-04
22GO:0034757: negative regulation of iron ion transport6.55E-04
23GO:0006419: alanyl-tRNA aminoacylation6.55E-04
24GO:0009090: homoserine biosynthetic process6.55E-04
25GO:0043266: regulation of potassium ion transport6.55E-04
26GO:0006551: leucine metabolic process6.55E-04
27GO:0072387: flavin adenine dinucleotide metabolic process6.55E-04
28GO:1902025: nitrate import6.55E-04
29GO:0043087: regulation of GTPase activity6.55E-04
30GO:2000021: regulation of ion homeostasis6.55E-04
31GO:0043609: regulation of carbon utilization6.55E-04
32GO:0090548: response to nitrate starvation6.55E-04
33GO:0000066: mitochondrial ornithine transport6.55E-04
34GO:0050801: ion homeostasis6.55E-04
35GO:0009097: isoleucine biosynthetic process1.16E-03
36GO:0006420: arginyl-tRNA aminoacylation1.41E-03
37GO:0010343: singlet oxygen-mediated programmed cell death1.41E-03
38GO:1901529: positive regulation of anion channel activity1.41E-03
39GO:1900871: chloroplast mRNA modification1.41E-03
40GO:0010617: circadian regulation of calcium ion oscillation1.41E-03
41GO:0010271: regulation of chlorophyll catabolic process1.41E-03
42GO:0006432: phenylalanyl-tRNA aminoacylation1.41E-03
43GO:0099402: plant organ development1.41E-03
44GO:0001736: establishment of planar polarity1.41E-03
45GO:0080009: mRNA methylation1.41E-03
46GO:0009786: regulation of asymmetric cell division1.41E-03
47GO:0046740: transport of virus in host, cell to cell1.41E-03
48GO:0009098: leucine biosynthetic process1.64E-03
49GO:1900865: chloroplast RNA modification1.64E-03
50GO:0048829: root cap development1.92E-03
51GO:0009451: RNA modification2.30E-03
52GO:0045910: negative regulation of DNA recombination2.32E-03
53GO:0010447: response to acidic pH2.32E-03
54GO:0031022: nuclear migration along microfilament2.32E-03
55GO:0080117: secondary growth2.32E-03
56GO:1902448: positive regulation of shade avoidance2.32E-03
57GO:0006000: fructose metabolic process2.32E-03
58GO:1901672: positive regulation of systemic acquired resistance2.32E-03
59GO:0071398: cellular response to fatty acid2.32E-03
60GO:0030029: actin filament-based process2.32E-03
61GO:0010582: floral meristem determinacy2.55E-03
62GO:0010540: basipetal auxin transport3.27E-03
63GO:0009102: biotin biosynthetic process3.38E-03
64GO:0051639: actin filament network formation3.38E-03
65GO:0032456: endocytic recycling3.38E-03
66GO:0034059: response to anoxia3.38E-03
67GO:0010239: chloroplast mRNA processing3.38E-03
68GO:0009800: cinnamic acid biosynthetic process3.38E-03
69GO:0006612: protein targeting to membrane3.38E-03
70GO:0044211: CTP salvage3.38E-03
71GO:0019048: modulation by virus of host morphology or physiology3.38E-03
72GO:1901332: negative regulation of lateral root development3.38E-03
73GO:2000904: regulation of starch metabolic process3.38E-03
74GO:0031048: chromatin silencing by small RNA3.38E-03
75GO:0009067: aspartate family amino acid biosynthetic process3.38E-03
76GO:0010371: regulation of gibberellin biosynthetic process3.38E-03
77GO:0051513: regulation of monopolar cell growth3.38E-03
78GO:0051017: actin filament bundle assembly4.55E-03
79GO:0051764: actin crosslink formation4.56E-03
80GO:0042274: ribosomal small subunit biogenesis4.56E-03
81GO:0006021: inositol biosynthetic process4.56E-03
82GO:1902347: response to strigolactone4.56E-03
83GO:0051567: histone H3-K9 methylation4.56E-03
84GO:0008295: spermidine biosynthetic process4.56E-03
85GO:0044206: UMP salvage4.56E-03
86GO:0009956: radial pattern formation4.56E-03
87GO:0009755: hormone-mediated signaling pathway4.56E-03
88GO:0009416: response to light stimulus4.57E-03
89GO:0006865: amino acid transport4.91E-03
90GO:0010158: abaxial cell fate specification5.86E-03
91GO:0080110: sporopollenin biosynthetic process5.86E-03
92GO:0016131: brassinosteroid metabolic process5.86E-03
93GO:0010117: photoprotection5.86E-03
94GO:0009696: salicylic acid metabolic process5.86E-03
95GO:0046283: anthocyanin-containing compound metabolic process5.86E-03
96GO:0009904: chloroplast accumulation movement5.86E-03
97GO:0009107: lipoate biosynthetic process5.86E-03
98GO:0016123: xanthophyll biosynthetic process5.86E-03
99GO:0060918: auxin transport7.28E-03
100GO:0048831: regulation of shoot system development7.28E-03
101GO:0016554: cytidine to uridine editing7.28E-03
102GO:0010190: cytochrome b6f complex assembly7.28E-03
103GO:0003006: developmental process involved in reproduction7.28E-03
104GO:0009920: cell plate formation involved in plant-type cell wall biogenesis7.28E-03
105GO:1901371: regulation of leaf morphogenesis7.28E-03
106GO:0006559: L-phenylalanine catabolic process7.28E-03
107GO:0006206: pyrimidine nucleobase metabolic process7.28E-03
108GO:0016458: gene silencing7.28E-03
109GO:0009759: indole glucosinolate biosynthetic process7.28E-03
110GO:0048827: phyllome development7.28E-03
111GO:0010087: phloem or xylem histogenesis8.47E-03
112GO:0009648: photoperiodism8.80E-03
113GO:0010310: regulation of hydrogen peroxide metabolic process8.80E-03
114GO:2000067: regulation of root morphogenesis8.80E-03
115GO:0009612: response to mechanical stimulus8.80E-03
116GO:0010244: response to low fluence blue light stimulus by blue low-fluence system8.80E-03
117GO:0048509: regulation of meristem development8.80E-03
118GO:0009903: chloroplast avoidance movement8.80E-03
119GO:0031930: mitochondria-nucleus signaling pathway8.80E-03
120GO:0009088: threonine biosynthetic process8.80E-03
121GO:0009958: positive gravitropism9.14E-03
122GO:0010305: leaf vascular tissue pattern formation9.14E-03
123GO:0007018: microtubule-based movement9.83E-03
124GO:0006955: immune response1.04E-02
125GO:0030497: fatty acid elongation1.04E-02
126GO:0010098: suspensor development1.04E-02
127GO:0010050: vegetative phase change1.04E-02
128GO:0006400: tRNA modification1.04E-02
129GO:0051510: regulation of unidimensional cell growth1.04E-02
130GO:0007166: cell surface receptor signaling pathway1.08E-02
131GO:0009793: embryo development ending in seed dormancy1.14E-02
132GO:0010583: response to cyclopentenone1.21E-02
133GO:0016032: viral process1.21E-02
134GO:0006402: mRNA catabolic process1.22E-02
135GO:0010439: regulation of glucosinolate biosynthetic process1.22E-02
136GO:0009850: auxin metabolic process1.22E-02
137GO:0009819: drought recovery1.22E-02
138GO:2000070: regulation of response to water deprivation1.22E-02
139GO:0070413: trehalose metabolism in response to stress1.22E-02
140GO:0000105: histidine biosynthetic process1.22E-02
141GO:0009639: response to red or far red light1.38E-02
142GO:0006464: cellular protein modification process1.38E-02
143GO:0006002: fructose 6-phosphate metabolic process1.40E-02
144GO:0071482: cellular response to light stimulus1.40E-02
145GO:0009827: plant-type cell wall modification1.40E-02
146GO:0009657: plastid organization1.40E-02
147GO:0032544: plastid translation1.40E-02
148GO:0051607: defense response to virus1.55E-02
149GO:0009051: pentose-phosphate shunt, oxidative branch1.59E-02
150GO:0006098: pentose-phosphate shunt1.59E-02
151GO:0048507: meristem development1.59E-02
152GO:0009638: phototropism1.79E-02
153GO:0016571: histone methylation1.79E-02
154GO:0010018: far-red light signaling pathway1.79E-02
155GO:0009086: methionine biosynthetic process1.79E-02
156GO:0016573: histone acetylation1.79E-02
157GO:1900426: positive regulation of defense response to bacterium1.79E-02
158GO:0010192: mucilage biosynthetic process2.00E-02
159GO:0010629: negative regulation of gene expression2.00E-02
160GO:0009299: mRNA transcription2.00E-02
161GO:0006535: cysteine biosynthetic process from serine2.00E-02
162GO:0030422: production of siRNA involved in RNA interference2.00E-02
163GO:0009641: shade avoidance2.00E-02
164GO:0006298: mismatch repair2.00E-02
165GO:0030244: cellulose biosynthetic process2.15E-02
166GO:0009089: lysine biosynthetic process via diaminopimelate2.22E-02
167GO:0043085: positive regulation of catalytic activity2.22E-02
168GO:0009682: induced systemic resistance2.22E-02
169GO:0048765: root hair cell differentiation2.22E-02
170GO:0000160: phosphorelay signal transduction system2.26E-02
171GO:0010311: lateral root formation2.26E-02
172GO:0006499: N-terminal protein myristoylation2.38E-02
173GO:0006790: sulfur compound metabolic process2.44E-02
174GO:0002213: defense response to insect2.44E-02
175GO:0010105: negative regulation of ethylene-activated signaling pathway2.44E-02
176GO:0045037: protein import into chloroplast stroma2.44E-02
177GO:0010588: cotyledon vascular tissue pattern formation2.68E-02
178GO:0010102: lateral root morphogenesis2.68E-02
179GO:0009785: blue light signaling pathway2.68E-02
180GO:0006006: glucose metabolic process2.68E-02
181GO:2000028: regulation of photoperiodism, flowering2.68E-02
182GO:0009691: cytokinin biosynthetic process2.68E-02
183GO:0010229: inflorescence development2.68E-02
184GO:0010075: regulation of meristem growth2.68E-02
185GO:0009725: response to hormone2.68E-02
186GO:0006094: gluconeogenesis2.68E-02
187GO:0048467: gynoecium development2.92E-02
188GO:0010020: chloroplast fission2.92E-02
189GO:0009933: meristem structural organization2.92E-02
190GO:0009266: response to temperature stimulus2.92E-02
191GO:0006839: mitochondrial transport3.11E-02
192GO:0045892: negative regulation of transcription, DNA-templated3.14E-02
193GO:0009825: multidimensional cell growth3.17E-02
194GO:0010039: response to iron ion3.17E-02
195GO:0046854: phosphatidylinositol phosphorylation3.17E-02
196GO:0000162: tryptophan biosynthetic process3.42E-02
197GO:0042753: positive regulation of circadian rhythm3.42E-02
198GO:0006863: purine nucleobase transport3.42E-02
199GO:0009833: plant-type primary cell wall biogenesis3.42E-02
200GO:0010114: response to red light3.52E-02
201GO:0042546: cell wall biogenesis3.66E-02
202GO:0019344: cysteine biosynthetic process3.68E-02
203GO:0030150: protein import into mitochondrial matrix3.68E-02
204GO:0006289: nucleotide-excision repair3.68E-02
205GO:0006338: chromatin remodeling3.68E-02
206GO:0007010: cytoskeleton organization3.68E-02
207GO:2000377: regulation of reactive oxygen species metabolic process3.68E-02
208GO:0009644: response to high light intensity3.81E-02
209GO:0009965: leaf morphogenesis3.95E-02
210GO:0006306: DNA methylation4.22E-02
211GO:0003333: amino acid transmembrane transport4.22E-02
212GO:0016998: cell wall macromolecule catabolic process4.22E-02
213GO:0010431: seed maturation4.22E-02
214GO:0016226: iron-sulfur cluster assembly4.51E-02
215GO:0009736: cytokinin-activated signaling pathway4.73E-02
216GO:0010082: regulation of root meristem growth4.79E-02
217GO:0009693: ethylene biosynthetic process4.79E-02
218GO:0071215: cellular response to abscisic acid stimulus4.79E-02
219GO:0009686: gibberellin biosynthetic process4.79E-02
220GO:0009625: response to insect4.79E-02
RankGO TermAdjusted P value
1GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
2GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
3GO:0008710: 8-amino-7-oxononanoate synthase activity0.00E+00
4GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
5GO:0004401: histidinol-phosphatase activity0.00E+00
6GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity0.00E+00
7GO:0052834: inositol monophosphate phosphatase activity0.00E+00
8GO:0008805: carbon-monoxide oxygenase activity1.84E-05
9GO:0017118: lipoyltransferase activity1.84E-05
10GO:0001872: (1->3)-beta-D-glucan binding1.26E-04
11GO:0003723: RNA binding1.40E-04
12GO:0004805: trehalose-phosphatase activity1.63E-04
13GO:0031418: L-ascorbic acid binding5.38E-04
14GO:0005227: calcium activated cation channel activity6.55E-04
15GO:0042834: peptidoglycan binding6.55E-04
16GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.55E-04
17GO:0003984: acetolactate synthase activity6.55E-04
18GO:0004813: alanine-tRNA ligase activity6.55E-04
19GO:0005290: L-histidine transmembrane transporter activity6.55E-04
20GO:0008395: steroid hydroxylase activity6.55E-04
21GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity6.55E-04
22GO:0052381: tRNA dimethylallyltransferase activity6.55E-04
23GO:0010347: L-galactose-1-phosphate phosphatase activity6.55E-04
24GO:0016415: octanoyltransferase activity1.41E-03
25GO:0004047: aminomethyltransferase activity1.41E-03
26GO:0004766: spermidine synthase activity1.41E-03
27GO:0052832: inositol monophosphate 3-phosphatase activity1.41E-03
28GO:0008934: inositol monophosphate 1-phosphatase activity1.41E-03
29GO:0052833: inositol monophosphate 4-phosphatase activity1.41E-03
30GO:0000064: L-ornithine transmembrane transporter activity1.41E-03
31GO:0004826: phenylalanine-tRNA ligase activity1.41E-03
32GO:0004412: homoserine dehydrogenase activity1.41E-03
33GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.41E-03
34GO:1901981: phosphatidylinositol phosphate binding1.41E-03
35GO:0050017: L-3-cyanoalanine synthase activity1.41E-03
36GO:0009884: cytokinin receptor activity1.41E-03
37GO:0003852: 2-isopropylmalate synthase activity1.41E-03
38GO:0043425: bHLH transcription factor binding1.41E-03
39GO:0004814: arginine-tRNA ligase activity1.41E-03
40GO:0004519: endonuclease activity1.56E-03
41GO:0045548: phenylalanine ammonia-lyase activity2.32E-03
42GO:0004148: dihydrolipoyl dehydrogenase activity2.32E-03
43GO:0005034: osmosensor activity2.32E-03
44GO:0016707: gibberellin 3-beta-dioxygenase activity2.32E-03
45GO:0016597: amino acid binding2.54E-03
46GO:0000049: tRNA binding2.55E-03
47GO:0052655: L-valine transaminase activity3.38E-03
48GO:0015189: L-lysine transmembrane transporter activity3.38E-03
49GO:0004072: aspartate kinase activity3.38E-03
50GO:0017172: cysteine dioxygenase activity3.38E-03
51GO:0052656: L-isoleucine transaminase activity3.38E-03
52GO:0015181: arginine transmembrane transporter activity3.38E-03
53GO:0035197: siRNA binding3.38E-03
54GO:0009882: blue light photoreceptor activity3.38E-03
55GO:0052654: L-leucine transaminase activity3.38E-03
56GO:0080031: methyl salicylate esterase activity3.38E-03
57GO:0010011: auxin binding4.56E-03
58GO:0004345: glucose-6-phosphate dehydrogenase activity4.56E-03
59GO:0070628: proteasome binding4.56E-03
60GO:0010328: auxin influx transmembrane transporter activity4.56E-03
61GO:0004084: branched-chain-amino-acid transaminase activity4.56E-03
62GO:0019199: transmembrane receptor protein kinase activity4.56E-03
63GO:0042277: peptide binding4.56E-03
64GO:0004845: uracil phosphoribosyltransferase activity4.56E-03
65GO:0005525: GTP binding5.00E-03
66GO:0008725: DNA-3-methyladenine glycosylase activity5.86E-03
67GO:0004523: RNA-DNA hybrid ribonuclease activity5.86E-03
68GO:0005471: ATP:ADP antiporter activity5.86E-03
69GO:0030983: mismatched DNA binding7.28E-03
70GO:0080030: methyl indole-3-acetate esterase activity7.28E-03
71GO:0004332: fructose-bisphosphate aldolase activity7.28E-03
72GO:0004709: MAP kinase kinase kinase activity7.28E-03
73GO:0031593: polyubiquitin binding7.28E-03
74GO:0000293: ferric-chelate reductase activity7.28E-03
75GO:2001070: starch binding7.28E-03
76GO:0004675: transmembrane receptor protein serine/threonine kinase activity7.89E-03
77GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds8.33E-03
78GO:0004124: cysteine synthase activity8.80E-03
79GO:0004849: uridine kinase activity8.80E-03
80GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity8.80E-03
81GO:0016832: aldehyde-lyase activity8.80E-03
82GO:0004656: procollagen-proline 4-dioxygenase activity8.80E-03
83GO:0019900: kinase binding8.80E-03
84GO:0003777: microtubule motor activity1.21E-02
85GO:0004518: nuclease activity1.21E-02
86GO:0015171: amino acid transmembrane transporter activity1.21E-02
87GO:0051015: actin filament binding1.29E-02
88GO:0003684: damaged DNA binding1.38E-02
89GO:0016759: cellulose synthase activity1.38E-02
90GO:0016413: O-acetyltransferase activity1.55E-02
91GO:0071949: FAD binding1.59E-02
92GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.59E-02
93GO:0030247: polysaccharide binding1.94E-02
94GO:0008047: enzyme activator activity2.00E-02
95GO:0004673: protein histidine kinase activity2.00E-02
96GO:0005089: Rho guanyl-nucleotide exchange factor activity2.22E-02
97GO:0005096: GTPase activator activity2.26E-02
98GO:0004521: endoribonuclease activity2.44E-02
99GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.49E-02
100GO:0009982: pseudouridine synthase activity2.68E-02
101GO:0015266: protein channel activity2.68E-02
102GO:0000155: phosphorelay sensor kinase activity2.68E-02
103GO:0050661: NADP binding3.11E-02
104GO:0008061: chitin binding3.17E-02
105GO:0003712: transcription cofactor activity3.17E-02
106GO:0004871: signal transducer activity3.28E-02
107GO:0042803: protein homodimerization activity3.28E-02
108GO:0102336: 3-oxo-arachidoyl-CoA synthase activity3.42E-02
109GO:0102337: 3-oxo-cerotoyl-CoA synthase activity3.42E-02
110GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity3.42E-02
111GO:0008017: microtubule binding3.50E-02
112GO:0004857: enzyme inhibitor activity3.68E-02
113GO:0043130: ubiquitin binding3.68E-02
114GO:0005528: FK506 binding3.68E-02
115GO:0008134: transcription factor binding3.68E-02
116GO:0043621: protein self-association3.81E-02
117GO:0043424: protein histidine kinase binding3.95E-02
118GO:0005345: purine nucleobase transmembrane transporter activity3.95E-02
119GO:0003924: GTPase activity4.15E-02
120GO:0003964: RNA-directed DNA polymerase activity4.22E-02
121GO:0042802: identical protein binding4.44E-02
122GO:0016301: kinase activity4.51E-02
123GO:0030570: pectate lyase activity4.79E-02
124GO:0016760: cellulose synthase (UDP-forming) activity4.79E-02
125GO:0003690: double-stranded DNA binding4.89E-02
RankGO TermAdjusted P value
1GO:0009537: proplastid0.00E+00
2GO:0000408: EKC/KEOPS complex0.00E+00
3GO:0005948: acetolactate synthase complex0.00E+00
4GO:0035452: extrinsic component of plastid membrane0.00E+00
5GO:0009507: chloroplast2.88E-04
6GO:0032541: cortical endoplasmic reticulum6.55E-04
7GO:0009986: cell surface7.66E-04
8GO:0009513: etioplast1.41E-03
9GO:0009509: chromoplast2.32E-03
10GO:0030139: endocytic vesicle2.32E-03
11GO:0016605: PML body2.32E-03
12GO:0030529: intracellular ribonucleoprotein complex2.73E-03
13GO:0032585: multivesicular body membrane3.38E-03
14GO:0032432: actin filament bundle3.38E-03
15GO:0005719: nuclear euchromatin3.38E-03
16GO:0009707: chloroplast outer membrane3.84E-03
17GO:0009898: cytoplasmic side of plasma membrane4.56E-03
18GO:0005886: plasma membrane5.98E-03
19GO:0005871: kinesin complex7.82E-03
20GO:0031305: integral component of mitochondrial inner membrane1.22E-02
21GO:0048226: Casparian strip1.22E-02
22GO:0009501: amyloplast1.22E-02
23GO:0046658: anchored component of plasma membrane1.35E-02
24GO:0005768: endosome1.65E-02
25GO:0015030: Cajal body1.79E-02
26GO:0016604: nuclear body1.79E-02
27GO:0005884: actin filament2.22E-02
28GO:0005874: microtubule2.23E-02
29GO:0009574: preprophase band2.68E-02
30GO:0016602: CCAAT-binding factor complex2.68E-02
31GO:0030095: chloroplast photosystem II2.92E-02
32GO:0005875: microtubule associated complex3.42E-02
33GO:0005856: cytoskeleton3.95E-02
34GO:0009654: photosystem II oxygen evolving complex3.95E-02
35GO:0042651: thylakoid membrane3.95E-02
36GO:0009532: plastid stroma4.22E-02
37GO:0009570: chloroplast stroma4.48E-02
38GO:0015629: actin cytoskeleton4.79E-02
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Gene type



Gene DE type