Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G29400

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0043069: negative regulation of programmed cell death4.84E-05
2GO:0034975: protein folding in endoplasmic reticulum5.18E-05
3GO:0010365: positive regulation of ethylene biosynthetic process5.18E-05
4GO:0051245: negative regulation of cellular defense response5.18E-05
5GO:0051180: vitamin transport5.18E-05
6GO:0030974: thiamine pyrophosphate transport5.18E-05
7GO:0018345: protein palmitoylation1.27E-04
8GO:0010541: acropetal auxin transport1.27E-04
9GO:0002221: pattern recognition receptor signaling pathway1.27E-04
10GO:0015893: drug transport1.27E-04
11GO:0051176: positive regulation of sulfur metabolic process2.17E-04
12GO:0018342: protein prenylation2.17E-04
13GO:0051091: positive regulation of sequence-specific DNA binding transcription factor activity2.17E-04
14GO:0002230: positive regulation of defense response to virus by host2.17E-04
15GO:0000187: activation of MAPK activity3.17E-04
16GO:0046713: borate transport3.17E-04
17GO:0006612: protein targeting to membrane3.17E-04
18GO:0015696: ammonium transport3.17E-04
19GO:0080142: regulation of salicylic acid biosynthetic process4.24E-04
20GO:0072488: ammonium transmembrane transport4.24E-04
21GO:0010363: regulation of plant-type hypersensitive response4.24E-04
22GO:0006014: D-ribose metabolic process6.60E-04
23GO:0034314: Arp2/3 complex-mediated actin nucleation6.60E-04
24GO:0048527: lateral root development7.17E-04
25GO:0006865: amino acid transport7.50E-04
26GO:2000037: regulation of stomatal complex patterning7.87E-04
27GO:1900056: negative regulation of leaf senescence9.18E-04
28GO:0070370: cellular heat acclimation9.18E-04
29GO:0031347: regulation of defense response1.19E-03
30GO:0071482: cellular response to light stimulus1.20E-03
31GO:0007186: G-protein coupled receptor signaling pathway1.20E-03
32GO:0048193: Golgi vesicle transport1.20E-03
33GO:0009751: response to salicylic acid1.27E-03
34GO:0000902: cell morphogenesis1.35E-03
35GO:0018105: peptidyl-serine phosphorylation1.92E-03
36GO:0010229: inflorescence development2.19E-03
37GO:0018107: peptidyl-threonine phosphorylation2.19E-03
38GO:0006468: protein phosphorylation2.30E-03
39GO:0007015: actin filament organization2.38E-03
40GO:0010540: basipetal auxin transport2.38E-03
41GO:0034605: cellular response to heat2.38E-03
42GO:0002237: response to molecule of bacterial origin2.38E-03
43GO:0009845: seed germination2.51E-03
44GO:0009825: multidimensional cell growth2.56E-03
45GO:0009863: salicylic acid mediated signaling pathway2.96E-03
46GO:0003333: amino acid transmembrane transport3.37E-03
47GO:0048278: vesicle docking3.37E-03
48GO:0009814: defense response, incompatible interaction3.59E-03
49GO:0016226: iron-sulfur cluster assembly3.59E-03
50GO:0001944: vasculature development3.80E-03
51GO:0010227: floral organ abscission3.80E-03
52GO:0006284: base-excision repair4.03E-03
53GO:0061025: membrane fusion4.96E-03
54GO:0019252: starch biosynthetic process5.21E-03
55GO:0016032: viral process5.71E-03
56GO:0010090: trichome morphogenesis5.97E-03
57GO:0006464: cellular protein modification process6.23E-03
58GO:0050832: defense response to fungus6.41E-03
59GO:0051607: defense response to virus6.76E-03
60GO:0009615: response to virus7.04E-03
61GO:0009788: negative regulation of abscisic acid-activated signaling pathway7.31E-03
62GO:0009816: defense response to bacterium, incompatible interaction7.31E-03
63GO:0006906: vesicle fusion7.59E-03
64GO:0009817: defense response to fungus, incompatible interaction8.46E-03
65GO:0016051: carbohydrate biosynthetic process9.99E-03
66GO:0009867: jasmonic acid mediated signaling pathway9.99E-03
67GO:0006839: mitochondrial transport1.09E-02
68GO:0006887: exocytosis1.13E-02
69GO:0006897: endocytosis1.13E-02
70GO:0000165: MAPK cascade1.37E-02
71GO:0035556: intracellular signal transduction1.69E-02
72GO:0009626: plant-type hypersensitive response1.74E-02
73GO:0009624: response to nematode1.89E-02
74GO:0006633: fatty acid biosynthetic process2.61E-02
75GO:0007623: circadian rhythm2.79E-02
76GO:0007166: cell surface receptor signaling pathway3.07E-02
77GO:0006970: response to osmotic stress4.02E-02
78GO:0009409: response to cold4.37E-02
79GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.55E-02
80GO:0010200: response to chitin4.55E-02
81GO:0046777: protein autophosphorylation4.66E-02
82GO:0044550: secondary metabolite biosynthetic process4.71E-02
RankGO TermAdjusted P value
1GO:0052821: DNA-7-methyladenine glycosylase activity0.00E+00
2GO:0003905: alkylbase DNA N-glycosylase activity0.00E+00
3GO:0052822: DNA-3-methylguanine glycosylase activity0.00E+00
4GO:0043916: DNA-7-methylguanine glycosylase activity0.00E+00
5GO:0090422: thiamine pyrophosphate transporter activity5.18E-05
6GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity5.18E-05
7GO:0016301: kinase activity3.24E-04
8GO:0008725: DNA-3-methyladenine glycosylase activity5.39E-04
9GO:0008519: ammonium transmembrane transporter activity6.60E-04
10GO:0004747: ribokinase activity7.87E-04
11GO:0004708: MAP kinase kinase activity1.06E-03
12GO:0008865: fructokinase activity1.06E-03
13GO:0015171: amino acid transmembrane transporter activity1.46E-03
14GO:0008047: enzyme activator activity1.67E-03
15GO:0005543: phospholipid binding1.84E-03
16GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.38E-03
17GO:0003756: protein disulfide isomerase activity4.03E-03
18GO:0003713: transcription coactivator activity4.72E-03
19GO:0005509: calcium ion binding5.85E-03
20GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor5.97E-03
21GO:0005200: structural constituent of cytoskeleton6.49E-03
22GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity6.49E-03
23GO:0009931: calcium-dependent protein serine/threonine kinase activity7.59E-03
24GO:0004683: calmodulin-dependent protein kinase activity7.88E-03
25GO:0000149: SNARE binding1.06E-02
26GO:0005484: SNAP receptor activity1.19E-02
27GO:0004674: protein serine/threonine kinase activity1.38E-02
28GO:0043565: sequence-specific DNA binding1.46E-02
29GO:0008234: cysteine-type peptidase activity1.58E-02
30GO:0005515: protein binding1.80E-02
31GO:0003779: actin binding1.85E-02
32GO:0015035: protein disulfide oxidoreductase activity1.93E-02
33GO:0005524: ATP binding1.97E-02
34GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.26E-02
35GO:0019825: oxygen binding2.28E-02
36GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.66E-02
37GO:0005506: iron ion binding3.18E-02
38GO:0044212: transcription regulatory region DNA binding3.24E-02
39GO:0043531: ADP binding4.07E-02
40GO:0004497: monooxygenase activity4.44E-02
41GO:0004672: protein kinase activity4.73E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane5.29E-04
2GO:0005885: Arp2/3 protein complex7.87E-04
3GO:0012505: endomembrane system1.81E-03
4GO:0005905: clathrin-coated pit3.37E-03
5GO:0030136: clathrin-coated vesicle4.26E-03
6GO:0016021: integral component of membrane1.02E-02
7GO:0031201: SNARE complex1.13E-02
8GO:0090406: pollen tube1.19E-02
9GO:0005834: heterotrimeric G-protein complex1.74E-02
10GO:0046658: anchored component of plasma membrane3.41E-02
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Gene type



Gene DE type