Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G29360

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006654: phosphatidic acid biosynthetic process0.00E+00
2GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
3GO:0005993: trehalose catabolic process0.00E+00
4GO:0050691: regulation of defense response to virus by host1.33E-04
5GO:0009968: negative regulation of signal transduction1.33E-04
6GO:0000077: DNA damage checkpoint1.33E-04
7GO:0043547: positive regulation of GTPase activity1.33E-04
8GO:1990641: response to iron ion starvation1.33E-04
9GO:0099132: ATP hydrolysis coupled cation transmembrane transport1.33E-04
10GO:0010112: regulation of systemic acquired resistance1.37E-04
11GO:0006101: citrate metabolic process3.07E-04
12GO:0080183: response to photooxidative stress3.07E-04
13GO:0080151: positive regulation of salicylic acid mediated signaling pathway3.07E-04
14GO:0040020: regulation of meiotic nuclear division3.07E-04
15GO:0002237: response to molecule of bacterial origin3.42E-04
16GO:0015783: GDP-fucose transport5.06E-04
17GO:0071323: cellular response to chitin7.24E-04
18GO:0055070: copper ion homeostasis7.24E-04
19GO:0055089: fatty acid homeostasis7.24E-04
20GO:0006097: glyoxylate cycle1.21E-03
21GO:0009229: thiamine diphosphate biosynthetic process1.21E-03
22GO:0006354: DNA-templated transcription, elongation1.49E-03
23GO:0009228: thiamine biosynthetic process1.49E-03
24GO:0009816: defense response to bacterium, incompatible interaction1.70E-03
25GO:0045926: negative regulation of growth1.78E-03
26GO:0010044: response to aluminum ion2.09E-03
27GO:2000014: regulation of endosperm development2.09E-03
28GO:0042742: defense response to bacterium2.14E-03
29GO:0031540: regulation of anthocyanin biosynthetic process2.42E-03
30GO:0006102: isocitrate metabolic process2.42E-03
31GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline2.42E-03
32GO:0009738: abscisic acid-activated signaling pathway2.78E-03
33GO:0006379: mRNA cleavage3.13E-03
34GO:0015780: nucleotide-sugar transport3.13E-03
35GO:0007338: single fertilization3.13E-03
36GO:0010332: response to gamma radiation3.13E-03
37GO:0015031: protein transport3.26E-03
38GO:0008202: steroid metabolic process3.50E-03
39GO:0009086: methionine biosynthetic process3.50E-03
40GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway3.50E-03
41GO:0010200: response to chitin4.08E-03
42GO:0009089: lysine biosynthetic process via diaminopimelate4.30E-03
43GO:0045037: protein import into chloroplast stroma4.72E-03
44GO:0010224: response to UV-B4.72E-03
45GO:0018107: peptidyl-threonine phosphorylation5.15E-03
46GO:0070588: calcium ion transmembrane transport6.06E-03
47GO:0009751: response to salicylic acid6.29E-03
48GO:0006636: unsaturated fatty acid biosynthetic process6.53E-03
49GO:0000162: tryptophan biosynthetic process6.53E-03
50GO:0018105: peptidyl-serine phosphorylation6.67E-03
51GO:0080147: root hair cell development7.01E-03
52GO:0006289: nucleotide-excision repair7.01E-03
53GO:0000027: ribosomal large subunit assembly7.01E-03
54GO:0006334: nucleosome assembly8.02E-03
55GO:0009269: response to desiccation8.02E-03
56GO:0009814: defense response, incompatible interaction8.55E-03
57GO:0071456: cellular response to hypoxia8.55E-03
58GO:0042127: regulation of cell proliferation9.63E-03
59GO:0009306: protein secretion9.63E-03
60GO:0010150: leaf senescence1.12E-02
61GO:0010182: sugar mediated signaling pathway1.13E-02
62GO:0009960: endosperm development1.13E-02
63GO:0009749: response to glucose1.25E-02
64GO:0006623: protein targeting to vacuole1.25E-02
65GO:0006470: protein dephosphorylation1.28E-02
66GO:0007166: cell surface receptor signaling pathway1.28E-02
67GO:0071554: cell wall organization or biogenesis1.32E-02
68GO:0008380: RNA splicing1.34E-02
69GO:0032502: developmental process1.38E-02
70GO:0030163: protein catabolic process1.44E-02
71GO:0009567: double fertilization forming a zygote and endosperm1.51E-02
72GO:0051607: defense response to virus1.64E-02
73GO:0009788: negative regulation of abscisic acid-activated signaling pathway1.78E-02
74GO:0006906: vesicle fusion1.85E-02
75GO:0007275: multicellular organism development2.35E-02
76GO:0000724: double-strand break repair via homologous recombination2.36E-02
77GO:0045087: innate immune response2.44E-02
78GO:0006099: tricarboxylic acid cycle2.52E-02
79GO:0009737: response to abscisic acid2.65E-02
80GO:0006887: exocytosis2.76E-02
81GO:0006897: endocytosis2.76E-02
82GO:0006631: fatty acid metabolic process2.76E-02
83GO:0042542: response to hydrogen peroxide2.84E-02
84GO:0010114: response to red light2.92E-02
85GO:0051707: response to other organism2.92E-02
86GO:0000209: protein polyubiquitination3.01E-02
87GO:0008643: carbohydrate transport3.09E-02
88GO:0006979: response to oxidative stress3.26E-02
89GO:0000165: MAPK cascade3.35E-02
90GO:0031347: regulation of defense response3.35E-02
91GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process3.35E-02
92GO:0009846: pollen germination3.44E-02
93GO:0006396: RNA processing4.74E-02
RankGO TermAdjusted P value
1GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity0.00E+00
2GO:0050334: thiaminase activity0.00E+00
3GO:0034338: short-chain carboxylesterase activity0.00E+00
4GO:0004555: alpha,alpha-trehalase activity0.00E+00
5GO:0047150: betaine-homocysteine S-methyltransferase activity1.33E-04
6GO:0010285: L,L-diaminopimelate aminotransferase activity1.33E-04
7GO:0015927: trehalase activity1.33E-04
8GO:0003994: aconitate hydratase activity3.07E-04
9GO:0032934: sterol binding3.07E-04
10GO:0005457: GDP-fucose transmembrane transporter activity5.06E-04
11GO:0035529: NADH pyrophosphatase activity7.24E-04
12GO:0004834: tryptophan synthase activity9.59E-04
13GO:0004930: G-protein coupled receptor activity9.59E-04
14GO:0045300: acyl-[acyl-carrier-protein] desaturase activity1.21E-03
15GO:0004623: phospholipase A2 activity1.21E-03
16GO:0047631: ADP-ribose diphosphatase activity1.21E-03
17GO:0000210: NAD+ diphosphatase activity1.49E-03
18GO:0004656: procollagen-proline 4-dioxygenase activity1.78E-03
19GO:0004708: MAP kinase kinase activity2.42E-03
20GO:0004869: cysteine-type endopeptidase inhibitor activity2.42E-03
21GO:0008142: oxysterol binding2.77E-03
22GO:0030234: enzyme regulator activity3.89E-03
23GO:0005388: calcium-transporting ATPase activity5.15E-03
24GO:0008061: chitin binding6.06E-03
25GO:0003712: transcription cofactor activity6.06E-03
26GO:0031418: L-ascorbic acid binding7.01E-03
27GO:0005509: calcium ion binding7.55E-03
28GO:0030170: pyridoxal phosphate binding9.01E-03
29GO:0005102: receptor binding1.02E-02
30GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.05E-02
31GO:0016887: ATPase activity1.12E-02
32GO:0046872: metal ion binding1.44E-02
33GO:0008483: transaminase activity1.57E-02
34GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity1.57E-02
35GO:0016413: O-acetyltransferase activity1.64E-02
36GO:0003682: chromatin binding1.84E-02
37GO:0009931: calcium-dependent protein serine/threonine kinase activity1.85E-02
38GO:0004683: calmodulin-dependent protein kinase activity1.92E-02
39GO:0004806: triglyceride lipase activity1.92E-02
40GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.06E-02
41GO:0005096: GTPase activator activity2.14E-02
42GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors2.44E-02
43GO:0000149: SNARE binding2.60E-02
44GO:0051539: 4 iron, 4 sulfur cluster binding2.68E-02
45GO:0042803: protein homodimerization activity2.71E-02
46GO:0004722: protein serine/threonine phosphatase activity2.84E-02
47GO:0005484: SNAP receptor activity2.92E-02
48GO:0051537: 2 iron, 2 sulfur cluster binding3.09E-02
49GO:0051287: NAD binding3.35E-02
50GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.62E-02
51GO:0003700: transcription factor activity, sequence-specific DNA binding4.17E-02
52GO:0016874: ligase activity4.45E-02
53GO:0022857: transmembrane transporter activity4.45E-02
54GO:0015035: protein disulfide oxidoreductase activity4.74E-02
RankGO TermAdjusted P value
1GO:0030658: transport vesicle membrane7.24E-04
2GO:0016021: integral component of membrane1.87E-03
3GO:0031902: late endosome membrane3.13E-03
4GO:0030665: clathrin-coated vesicle membrane3.50E-03
5GO:0008540: proteasome regulatory particle, base subcomplex3.50E-03
6GO:0017119: Golgi transport complex3.89E-03
7GO:0005794: Golgi apparatus1.14E-02
8GO:0000139: Golgi membrane1.35E-02
9GO:0000325: plant-type vacuole2.29E-02
10GO:0031201: SNARE complex2.76E-02
11GO:0000502: proteasome complex3.62E-02
12GO:0005681: spliceosomal complex4.07E-02
13GO:0016607: nuclear speck4.17E-02
14GO:0010008: endosome membrane4.17E-02
15GO:0005887: integral component of plasma membrane4.32E-02
16GO:0009706: chloroplast inner membrane4.65E-02
<
Gene type



Gene DE type