GO Enrichment Analysis of Co-expressed Genes with
AT3G29240
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0036503: ERAD pathway | 0.00E+00 |
| 2 | GO:0050688: regulation of defense response to virus | 3.88E-05 |
| 3 | GO:0035335: peptidyl-tyrosine dephosphorylation | 3.88E-05 |
| 4 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 4.28E-05 |
| 5 | GO:0006511: ubiquitin-dependent protein catabolic process | 4.48E-05 |
| 6 | GO:0048577: negative regulation of short-day photoperiodism, flowering | 1.05E-04 |
| 7 | GO:0071786: endoplasmic reticulum tubular network organization | 1.05E-04 |
| 8 | GO:0033320: UDP-D-xylose biosynthetic process | 1.45E-04 |
| 9 | GO:0033356: UDP-L-arabinose metabolic process | 1.45E-04 |
| 10 | GO:0047484: regulation of response to osmotic stress | 2.34E-04 |
| 11 | GO:0042732: D-xylose metabolic process | 2.34E-04 |
| 12 | GO:0009612: response to mechanical stimulus | 2.82E-04 |
| 13 | GO:0006002: fructose 6-phosphate metabolic process | 4.37E-04 |
| 14 | GO:0010497: plasmodesmata-mediated intercellular transport | 4.37E-04 |
| 15 | GO:2000280: regulation of root development | 5.49E-04 |
| 16 | GO:0043067: regulation of programmed cell death | 5.49E-04 |
| 17 | GO:0009651: response to salt stress | 6.76E-04 |
| 18 | GO:0009225: nucleotide-sugar metabolic process | 9.19E-04 |
| 19 | GO:0034976: response to endoplasmic reticulum stress | 9.85E-04 |
| 20 | GO:0006487: protein N-linked glycosylation | 1.05E-03 |
| 21 | GO:0000027: ribosomal large subunit assembly | 1.05E-03 |
| 22 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.49E-03 |
| 23 | GO:0046686: response to cadmium ion | 1.52E-03 |
| 24 | GO:0000302: response to reactive oxygen species | 1.89E-03 |
| 25 | GO:0030163: protein catabolic process | 2.07E-03 |
| 26 | GO:0030244: cellulose biosynthetic process | 2.90E-03 |
| 27 | GO:0009832: plant-type cell wall biogenesis | 3.00E-03 |
| 28 | GO:0009735: response to cytokinin | 3.03E-03 |
| 29 | GO:0010043: response to zinc ion | 3.20E-03 |
| 30 | GO:0009910: negative regulation of flower development | 3.20E-03 |
| 31 | GO:0034599: cellular response to oxidative stress | 3.50E-03 |
| 32 | GO:0009926: auxin polar transport | 4.04E-03 |
| 33 | GO:0006457: protein folding | 4.27E-03 |
| 34 | GO:0000165: MAPK cascade | 4.60E-03 |
| 35 | GO:0051603: proteolysis involved in cellular protein catabolic process | 5.07E-03 |
| 36 | GO:0006096: glycolytic process | 5.55E-03 |
| 37 | GO:0048316: seed development | 5.68E-03 |
| 38 | GO:0009553: embryo sac development | 6.18E-03 |
| 39 | GO:0006979: response to oxidative stress | 6.71E-03 |
| 40 | GO:0042744: hydrogen peroxide catabolic process | 8.07E-03 |
| 41 | GO:0009790: embryo development | 8.21E-03 |
| 42 | GO:0006470: protein dephosphorylation | 1.01E-02 |
| 43 | GO:0045944: positive regulation of transcription from RNA polymerase II promoter | 1.19E-02 |
| 44 | GO:0042254: ribosome biogenesis | 1.27E-02 |
| 45 | GO:0045454: cell redox homeostasis | 1.66E-02 |
| 46 | GO:0016567: protein ubiquitination | 2.04E-02 |
| 47 | GO:0009908: flower development | 2.70E-02 |
| 48 | GO:0009738: abscisic acid-activated signaling pathway | 2.83E-02 |
| 49 | GO:0009555: pollen development | 2.90E-02 |
| 50 | GO:0071555: cell wall organization | 4.79E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004298: threonine-type endopeptidase activity | 1.79E-07 |
| 2 | GO:0008233: peptidase activity | 9.40E-05 |
| 3 | GO:0004722: protein serine/threonine phosphatase activity | 1.43E-04 |
| 4 | GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 1.88E-04 |
| 5 | GO:0016688: L-ascorbate peroxidase activity | 2.34E-04 |
| 6 | GO:0048040: UDP-glucuronate decarboxylase activity | 2.34E-04 |
| 7 | GO:0004130: cytochrome-c peroxidase activity | 2.34E-04 |
| 8 | GO:0070403: NAD+ binding | 2.82E-04 |
| 9 | GO:0003872: 6-phosphofructokinase activity | 3.32E-04 |
| 10 | GO:0008135: translation factor activity, RNA binding | 4.37E-04 |
| 11 | GO:0004725: protein tyrosine phosphatase activity | 9.85E-04 |
| 12 | GO:0043424: protein histidine kinase binding | 1.12E-03 |
| 13 | GO:0004540: ribonuclease activity | 1.19E-03 |
| 14 | GO:0003756: protein disulfide isomerase activity | 1.41E-03 |
| 15 | GO:0030145: manganese ion binding | 3.20E-03 |
| 16 | GO:0003746: translation elongation factor activity | 3.40E-03 |
| 17 | GO:0030246: carbohydrate binding | 4.44E-03 |
| 18 | GO:0045735: nutrient reservoir activity | 5.55E-03 |
| 19 | GO:0051082: unfolded protein binding | 6.31E-03 |
| 20 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 8.07E-03 |
| 21 | GO:0004601: peroxidase activity | 1.25E-02 |
| 22 | GO:0016787: hydrolase activity | 1.43E-02 |
| 23 | GO:0061630: ubiquitin protein ligase activity | 1.51E-02 |
| 24 | GO:0000166: nucleotide binding | 2.90E-02 |
| 25 | GO:0005525: GTP binding | 4.14E-02 |
| 26 | GO:0005509: calcium ion binding | 4.53E-02 |
| 27 | GO:0005515: protein binding | 4.70E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000327: lytic vacuole within protein storage vacuole | 0.00E+00 |
| 2 | GO:0000502: proteasome complex | 1.05E-07 |
| 3 | GO:0005839: proteasome core complex | 1.79E-07 |
| 4 | GO:0019773: proteasome core complex, alpha-subunit complex | 3.56E-06 |
| 5 | GO:0005783: endoplasmic reticulum | 5.37E-05 |
| 6 | GO:0005838: proteasome regulatory particle | 6.95E-05 |
| 7 | GO:0005788: endoplasmic reticulum lumen | 1.00E-04 |
| 8 | GO:0071782: endoplasmic reticulum tubular network | 1.05E-04 |
| 9 | GO:0005945: 6-phosphofructokinase complex | 1.88E-04 |
| 10 | GO:0008250: oligosaccharyltransferase complex | 1.88E-04 |
| 11 | GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane | 3.84E-04 |
| 12 | GO:0000326: protein storage vacuole | 4.37E-04 |
| 13 | GO:0008541: proteasome regulatory particle, lid subcomplex | 6.67E-04 |
| 14 | GO:0005774: vacuolar membrane | 7.09E-04 |
| 15 | GO:0031307: integral component of mitochondrial outer membrane | 7.29E-04 |
| 16 | GO:0009506: plasmodesma | 1.19E-03 |
| 17 | GO:0005773: vacuole | 1.34E-03 |
| 18 | GO:0005829: cytosol | 1.36E-03 |
| 19 | GO:0005789: endoplasmic reticulum membrane | 1.48E-03 |
| 20 | GO:0005840: ribosome | 6.98E-03 |
| 21 | GO:0009505: plant-type cell wall | 8.35E-03 |
| 22 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 1.34E-02 |
| 23 | GO:0005886: plasma membrane | 1.53E-02 |
| 24 | GO:0048046: apoplast | 2.44E-02 |
| 25 | GO:0022626: cytosolic ribosome | 2.81E-02 |
| 26 | GO:0005634: nucleus | 3.18E-02 |
| 27 | GO:0009579: thylakoid | 3.29E-02 |
| 28 | GO:0005794: Golgi apparatus | 3.32E-02 |
| 29 | GO:0005739: mitochondrion | 3.79E-02 |
| 30 | GO:0016020: membrane | 4.30E-02 |