Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G29075

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090359: negative regulation of abscisic acid biosynthetic process0.00E+00
2GO:0015690: aluminum cation transport0.00E+00
3GO:1900367: positive regulation of defense response to insect0.00E+00
4GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
5GO:0009312: oligosaccharide biosynthetic process0.00E+00
6GO:0046865: terpenoid transport0.00E+00
7GO:2000636: positive regulation of primary miRNA processing0.00E+00
8GO:0010324: membrane invagination0.00E+00
9GO:0071327: cellular response to trehalose stimulus0.00E+00
10GO:0010055: atrichoblast differentiation0.00E+00
11GO:1902001: fatty acid transmembrane transport0.00E+00
12GO:2000630: positive regulation of miRNA metabolic process0.00E+00
13GO:0032260: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance0.00E+00
14GO:0009751: response to salicylic acid8.34E-08
15GO:0071456: cellular response to hypoxia7.13E-07
16GO:0009737: response to abscisic acid1.15E-05
17GO:0010150: leaf senescence1.56E-05
18GO:0010200: response to chitin1.71E-05
19GO:0006952: defense response3.17E-05
20GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway4.73E-05
21GO:0033358: UDP-L-arabinose biosynthetic process1.04E-04
22GO:0045227: capsule polysaccharide biosynthetic process1.04E-04
23GO:0042742: defense response to bacterium1.55E-04
24GO:0009643: photosynthetic acclimation2.30E-04
25GO:0009753: response to jasmonic acid3.34E-04
26GO:0009625: response to insect3.72E-04
27GO:0006012: galactose metabolic process3.72E-04
28GO:0019567: arabinose biosynthetic process4.21E-04
29GO:0015969: guanosine tetraphosphate metabolic process4.21E-04
30GO:0033306: phytol metabolic process4.21E-04
31GO:1901183: positive regulation of camalexin biosynthetic process4.21E-04
32GO:0050691: regulation of defense response to virus by host4.21E-04
33GO:0032491: detection of molecule of fungal origin4.21E-04
34GO:0009968: negative regulation of signal transduction4.21E-04
35GO:1990542: mitochondrial transmembrane transport4.21E-04
36GO:0032107: regulation of response to nutrient levels4.21E-04
37GO:0048508: embryonic meristem development4.21E-04
38GO:0015760: glucose-6-phosphate transport4.21E-04
39GO:0046256: 2,4,6-trinitrotoluene catabolic process4.21E-04
40GO:0043547: positive regulation of GTPase activity4.21E-04
41GO:0051707: response to other organism5.06E-04
42GO:0042391: regulation of membrane potential5.10E-04
43GO:0006979: response to oxidative stress5.47E-04
44GO:0009636: response to toxic substance6.06E-04
45GO:0010204: defense response signaling pathway, resistance gene-independent6.09E-04
46GO:2000031: regulation of salicylic acid mediated signaling pathway6.09E-04
47GO:0010208: pollen wall assembly6.09E-04
48GO:0009749: response to glucose6.75E-04
49GO:0010112: regulation of systemic acquired resistance7.29E-04
50GO:0010193: response to ozone7.36E-04
51GO:1900426: positive regulation of defense response to bacterium8.60E-04
52GO:0010115: regulation of abscisic acid biosynthetic process9.10E-04
53GO:0015908: fatty acid transport9.10E-04
54GO:0002240: response to molecule of oomycetes origin9.10E-04
55GO:0015865: purine nucleotide transport9.10E-04
56GO:0044419: interspecies interaction between organisms9.10E-04
57GO:0009945: radial axis specification9.10E-04
58GO:0015712: hexose phosphate transport9.10E-04
59GO:0010271: regulation of chlorophyll catabolic process9.10E-04
60GO:0051258: protein polymerization9.10E-04
61GO:0071668: plant-type cell wall assembly9.10E-04
62GO:0080151: positive regulation of salicylic acid mediated signaling pathway9.10E-04
63GO:0010618: aerenchyma formation9.10E-04
64GO:0080181: lateral root branching9.10E-04
65GO:0055088: lipid homeostasis9.10E-04
66GO:0009624: response to nematode1.36E-03
67GO:0050832: defense response to fungus1.41E-03
68GO:0015695: organic cation transport1.48E-03
69GO:0015714: phosphoenolpyruvate transport1.48E-03
70GO:0080168: abscisic acid transport1.48E-03
71GO:1900055: regulation of leaf senescence1.48E-03
72GO:0010498: proteasomal protein catabolic process1.48E-03
73GO:0006954: inflammatory response1.48E-03
74GO:0034051: negative regulation of plant-type hypersensitive response1.48E-03
75GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway1.48E-03
76GO:0035436: triose phosphate transmembrane transport1.48E-03
77GO:0045836: positive regulation of meiotic nuclear division1.48E-03
78GO:0015692: lead ion transport1.48E-03
79GO:0009414: response to water deprivation1.54E-03
80GO:0002237: response to molecule of bacterial origin1.68E-03
81GO:0009407: toxin catabolic process1.85E-03
82GO:0009225: nucleotide-sugar metabolic process1.89E-03
83GO:0046902: regulation of mitochondrial membrane permeability2.14E-03
84GO:0010731: protein glutathionylation2.14E-03
85GO:0015696: ammonium transport2.14E-03
86GO:0051289: protein homotetramerization2.14E-03
87GO:0046836: glycolipid transport2.14E-03
88GO:0048194: Golgi vesicle budding2.14E-03
89GO:0009867: jasmonic acid mediated signaling pathway2.21E-03
90GO:0080147: root hair cell development2.33E-03
91GO:2000377: regulation of reactive oxygen species metabolic process2.33E-03
92GO:0006897: endocytosis2.76E-03
93GO:0072488: ammonium transmembrane transport2.88E-03
94GO:0015713: phosphoglycerate transport2.88E-03
95GO:0080142: regulation of salicylic acid biosynthetic process2.88E-03
96GO:0009694: jasmonic acid metabolic process2.88E-03
97GO:1901141: regulation of lignin biosynthetic process2.88E-03
98GO:0010109: regulation of photosynthesis2.88E-03
99GO:0031348: negative regulation of defense response3.10E-03
100GO:0009611: response to wounding3.67E-03
101GO:0045927: positive regulation of growth3.68E-03
102GO:0034052: positive regulation of plant-type hypersensitive response3.68E-03
103GO:0009697: salicylic acid biosynthetic process3.68E-03
104GO:0030041: actin filament polymerization3.68E-03
105GO:0018344: protein geranylgeranylation3.68E-03
106GO:0010225: response to UV-C3.68E-03
107GO:0006855: drug transmembrane transport3.72E-03
108GO:0031347: regulation of defense response3.90E-03
109GO:0048317: seed morphogenesis4.56E-03
110GO:0033365: protein localization to organelle4.56E-03
111GO:0010337: regulation of salicylic acid metabolic process4.56E-03
112GO:0002238: response to molecule of fungal origin4.56E-03
113GO:0009759: indole glucosinolate biosynthetic process4.56E-03
114GO:0010942: positive regulation of cell death4.56E-03
115GO:0009646: response to absence of light5.00E-03
116GO:0042372: phylloquinone biosynthetic process5.49E-03
117GO:0045926: negative regulation of growth5.49E-03
118GO:0009942: longitudinal axis specification5.49E-03
119GO:0010310: regulation of hydrogen peroxide metabolic process5.49E-03
120GO:0071470: cellular response to osmotic stress5.49E-03
121GO:0009626: plant-type hypersensitive response6.01E-03
122GO:1900056: negative regulation of leaf senescence6.49E-03
123GO:1900057: positive regulation of leaf senescence6.49E-03
124GO:0000122: negative regulation of transcription from RNA polymerase II promoter6.49E-03
125GO:0050829: defense response to Gram-negative bacterium6.49E-03
126GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway6.49E-03
127GO:0071446: cellular response to salicylic acid stimulus6.49E-03
128GO:0010928: regulation of auxin mediated signaling pathway7.55E-03
129GO:0009787: regulation of abscisic acid-activated signaling pathway7.55E-03
130GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline7.55E-03
131GO:0009819: drought recovery7.55E-03
132GO:0043068: positive regulation of programmed cell death7.55E-03
133GO:0045010: actin nucleation7.55E-03
134GO:0031540: regulation of anthocyanin biosynthetic process7.55E-03
135GO:0009723: response to ethylene7.64E-03
136GO:0010120: camalexin biosynthetic process8.67E-03
137GO:0009788: negative regulation of abscisic acid-activated signaling pathway8.81E-03
138GO:0007165: signal transduction9.25E-03
139GO:0009627: systemic acquired resistance9.31E-03
140GO:0006950: response to stress9.82E-03
141GO:0019432: triglyceride biosynthetic process9.85E-03
142GO:0046916: cellular transition metal ion homeostasis9.85E-03
143GO:0006468: protein phosphorylation1.04E-02
144GO:0048268: clathrin coat assembly1.11E-02
145GO:0010380: regulation of chlorophyll biosynthetic process1.11E-02
146GO:0008202: steroid metabolic process1.11E-02
147GO:0009870: defense response signaling pathway, resistance gene-dependent1.24E-02
148GO:0006032: chitin catabolic process1.24E-02
149GO:0010119: regulation of stomatal movement1.26E-02
150GO:0019684: photosynthesis, light reaction1.37E-02
151GO:0009682: induced systemic resistance1.37E-02
152GO:0009089: lysine biosynthetic process via diaminopimelate1.37E-02
153GO:0072593: reactive oxygen species metabolic process1.37E-02
154GO:0009684: indoleacetic acid biosynthetic process1.37E-02
155GO:0012501: programmed cell death1.51E-02
156GO:0002213: defense response to insect1.51E-02
157GO:0010105: negative regulation of ethylene-activated signaling pathway1.51E-02
158GO:0000266: mitochondrial fission1.51E-02
159GO:2000028: regulation of photoperiodism, flowering1.65E-02
160GO:0055046: microgametogenesis1.65E-02
161GO:0006887: exocytosis1.65E-02
162GO:0006829: zinc II ion transport1.65E-02
163GO:0006470: protein dephosphorylation1.68E-02
164GO:0007166: cell surface receptor signaling pathway1.68E-02
165GO:0009617: response to bacterium1.77E-02
166GO:0034605: cellular response to heat1.80E-02
167GO:0080188: RNA-directed DNA methylation1.95E-02
168GO:0010167: response to nitrate1.95E-02
169GO:0046688: response to copper ion1.95E-02
170GO:0000162: tryptophan biosynthetic process2.11E-02
171GO:0006812: cation transport2.25E-02
172GO:0006874: cellular calcium ion homeostasis2.43E-02
173GO:0006825: copper ion transport2.43E-02
174GO:0009409: response to cold2.48E-02
175GO:0009269: response to desiccation2.60E-02
176GO:0051321: meiotic cell cycle2.60E-02
177GO:0016998: cell wall macromolecule catabolic process2.60E-02
178GO:0010017: red or far-red light signaling pathway2.78E-02
179GO:2000022: regulation of jasmonic acid mediated signaling pathway2.78E-02
180GO:0009561: megagametogenesis3.14E-02
181GO:0042127: regulation of cell proliferation3.14E-02
182GO:0009620: response to fungus3.14E-02
183GO:0080167: response to karrikin3.21E-02
184GO:0070417: cellular response to cold3.32E-02
185GO:0042631: cellular response to water deprivation3.51E-02
186GO:0000271: polysaccharide biosynthetic process3.51E-02
187GO:0009960: endosperm development3.70E-02
188GO:0045489: pectin biosynthetic process3.70E-02
189GO:0006885: regulation of pH3.70E-02
190GO:0010182: sugar mediated signaling pathway3.70E-02
191GO:0015979: photosynthesis3.78E-02
192GO:0071554: cell wall organization or biogenesis4.30E-02
193GO:0002229: defense response to oomycetes4.30E-02
194GO:0000302: response to reactive oxygen species4.30E-02
195GO:0019761: glucosinolate biosynthetic process4.51E-02
196GO:0016567: protein ubiquitination4.92E-02
197GO:0009790: embryo development4.99E-02
RankGO TermAdjusted P value
1GO:0080131: hydroxyjasmonate sulfotransferase activity0.00E+00
2GO:0005212: structural constituent of eye lens0.00E+00
3GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
4GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
5GO:0003978: UDP-glucose 4-epimerase activity7.74E-06
6GO:0050373: UDP-arabinose 4-epimerase activity1.04E-04
7GO:0030552: cAMP binding1.64E-04
8GO:0030553: cGMP binding1.64E-04
9GO:0005216: ion channel activity2.56E-04
10GO:0004012: phospholipid-translocating ATPase activity3.09E-04
11GO:0043295: glutathione binding3.99E-04
12GO:0019707: protein-cysteine S-acyltransferase activity4.21E-04
13GO:2001147: camalexin binding4.21E-04
14GO:0015245: fatty acid transporter activity4.21E-04
15GO:0010285: L,L-diaminopimelate aminotransferase activity4.21E-04
16GO:2001227: quercitrin binding4.21E-04
17GO:0004662: CAAX-protein geranylgeranyltransferase activity4.21E-04
18GO:0030551: cyclic nucleotide binding5.10E-04
19GO:0005249: voltage-gated potassium channel activity5.10E-04
20GO:0019901: protein kinase binding6.75E-04
21GO:0015152: glucose-6-phosphate transmembrane transporter activity9.10E-04
22GO:0048531: beta-1,3-galactosyltransferase activity9.10E-04
23GO:0008728: GTP diphosphokinase activity9.10E-04
24GO:0047364: desulfoglucosinolate sulfotransferase activity9.10E-04
25GO:0004568: chitinase activity1.00E-03
26GO:0008375: acetylglucosaminyltransferase activity1.34E-03
27GO:0016531: copper chaperone activity1.48E-03
28GO:0032403: protein complex binding1.48E-03
29GO:0071917: triose-phosphate transmembrane transporter activity1.48E-03
30GO:0004324: ferredoxin-NADP+ reductase activity1.48E-03
31GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.49E-03
32GO:0043531: ADP binding1.71E-03
33GO:0008146: sulfotransferase activity1.89E-03
34GO:0016301: kinase activity1.95E-03
35GO:0017077: oxidative phosphorylation uncoupler activity2.14E-03
36GO:0017089: glycolipid transporter activity2.14E-03
37GO:0001046: core promoter sequence-specific DNA binding2.33E-03
38GO:0004930: G-protein coupled receptor activity2.88E-03
39GO:0015120: phosphoglycerate transmembrane transporter activity2.88E-03
40GO:0004834: tryptophan synthase activity2.88E-03
41GO:0004737: pyruvate decarboxylase activity2.88E-03
42GO:0051861: glycolipid binding2.88E-03
43GO:0004364: glutathione transferase activity2.90E-03
44GO:0043565: sequence-specific DNA binding2.98E-03
45GO:0004499: N,N-dimethylaniline monooxygenase activity3.68E-03
46GO:0005496: steroid binding3.68E-03
47GO:0005471: ATP:ADP antiporter activity3.68E-03
48GO:0070696: transmembrane receptor protein serine/threonine kinase binding3.68E-03
49GO:0008519: ammonium transmembrane transporter activity4.56E-03
50GO:0030976: thiamine pyrophosphate binding4.56E-03
51GO:0003950: NAD+ ADP-ribosyltransferase activity5.49E-03
52GO:0005261: cation channel activity5.49E-03
53GO:0004144: diacylglycerol O-acyltransferase activity5.49E-03
54GO:0004656: procollagen-proline 4-dioxygenase activity5.49E-03
55GO:0004674: protein serine/threonine kinase activity6.14E-03
56GO:0016831: carboxy-lyase activity6.49E-03
57GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity7.41E-03
58GO:0004033: aldo-keto reductase (NADP) activity7.55E-03
59GO:0004714: transmembrane receptor protein tyrosine kinase activity7.55E-03
60GO:0008142: oxysterol binding8.67E-03
61GO:0047617: acyl-CoA hydrolase activity1.11E-02
62GO:0015238: drug transmembrane transporter activity1.15E-02
63GO:0005545: 1-phosphatidylinositol binding1.24E-02
64GO:0015297: antiporter activity1.33E-02
65GO:0008559: xenobiotic-transporting ATPase activity1.37E-02
66GO:0050661: NADP binding1.58E-02
67GO:0005315: inorganic phosphate transmembrane transporter activity1.65E-02
68GO:0005524: ATP binding1.78E-02
69GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.92E-02
70GO:0005217: intracellular ligand-gated ion channel activity1.95E-02
71GO:0004970: ionotropic glutamate receptor activity1.95E-02
72GO:0004190: aspartic-type endopeptidase activity1.95E-02
73GO:0031418: L-ascorbic acid binding2.27E-02
74GO:0003954: NADH dehydrogenase activity2.27E-02
75GO:0005516: calmodulin binding2.32E-02
76GO:0000287: magnesium ion binding2.40E-02
77GO:0008324: cation transmembrane transporter activity2.43E-02
78GO:0004842: ubiquitin-protein transferase activity2.58E-02
79GO:0004707: MAP kinase activity2.60E-02
80GO:0019706: protein-cysteine S-palmitoyltransferase activity2.60E-02
81GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.78E-02
82GO:0016757: transferase activity, transferring glycosyl groups2.81E-02
83GO:0005509: calcium ion binding3.33E-02
84GO:0005451: monovalent cation:proton antiporter activity3.51E-02
85GO:0005199: structural constituent of cell wall3.70E-02
86GO:0046873: metal ion transmembrane transporter activity3.70E-02
87GO:0030276: clathrin binding3.70E-02
88GO:0015299: solute:proton antiporter activity3.90E-02
89GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting4.01E-02
90GO:0004722: protein serine/threonine phosphatase activity4.49E-02
91GO:0004197: cysteine-type endopeptidase activity4.51E-02
92GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding4.57E-02
93GO:0015385: sodium:proton antiporter activity4.72E-02
RankGO TermAdjusted P value
1GO:0016021: integral component of membrane3.68E-08
2GO:0005886: plasma membrane4.19E-06
3GO:0005901: caveola7.89E-06
4GO:0000813: ESCRT I complex1.61E-04
5GO:0005953: CAAX-protein geranylgeranyltransferase complex4.21E-04
6GO:0000138: Golgi trans cisterna4.21E-04
7GO:0031304: intrinsic component of mitochondrial inner membrane9.10E-04
8GO:0008287: protein serine/threonine phosphatase complex1.48E-03
9GO:0009530: primary cell wall1.48E-03
10GO:0070062: extracellular exosome2.14E-03
11GO:0005794: Golgi apparatus4.99E-03
12GO:0016363: nuclear matrix5.49E-03
13GO:0032580: Golgi cisterna membrane6.97E-03
14GO:0005802: trans-Golgi network8.87E-03
15GO:0015030: Cajal body1.11E-02
16GO:0005740: mitochondrial envelope1.24E-02
17GO:0005578: proteinaceous extracellular matrix1.65E-02
18GO:0031012: extracellular matrix1.65E-02
19GO:0005795: Golgi stack1.95E-02
20GO:0005769: early endosome2.11E-02
21GO:0005758: mitochondrial intermembrane space2.27E-02
22GO:0005887: integral component of plasma membrane2.42E-02
23GO:0005741: mitochondrial outer membrane2.60E-02
24GO:0005905: clathrin-coated pit2.60E-02
25GO:0030136: clathrin-coated vesicle3.32E-02
26GO:0005770: late endosome3.70E-02
27GO:0005777: peroxisome4.37E-02
28GO:0000145: exocyst4.51E-02
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Gene type



Gene DE type