co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G28930

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010055: atrichoblast differentiation	0.00E+00
2	GO:1902001: fatty acid transmembrane transport	0.00E+00
3	GO:0015690: aluminum cation transport	0.00E+00
4	GO:0043620: regulation of DNA-templated transcription in response to stress	0.00E+00
5	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
6	GO:0018063: cytochrome c-heme linkage	0.00E+00
7	GO:0002376: immune system process	0.00E+00
8	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
9	GO:0009636: response to toxic substance	7.53E-07
10	GO:0010112: regulation of systemic acquired resistance	1.07E-05
11	GO:0009759: indole glucosinolate biosynthetic process	1.04E-04
12	GO:1900057: positive regulation of leaf senescence	1.88E-04
13	GO:0032107: regulation of response to nutrient levels	2.55E-04
14	GO:0080173: male-female gamete recognition during double fertilization	2.55E-04
15	GO:0033306: phytol metabolic process	2.55E-04
16	GO:0009700: indole phytoalexin biosynthetic process	2.55E-04
17	GO:0010230: alternative respiration	2.55E-04
18	GO:0034214: protein hexamerization	2.55E-04
19	GO:0010482: regulation of epidermal cell division	2.55E-04
20	GO:1900384: regulation of flavonol biosynthetic process	2.55E-04
21	GO:0042742: defense response to bacterium	2.60E-04
22	GO:0010120: camalexin biosynthetic process	2.94E-04
23	GO:0051607: defense response to virus	4.32E-04
24	GO:0050832: defense response to fungus	4.41E-04
25	GO:0071668: plant-type cell wall assembly	5.64E-04
26	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	5.64E-04
27	GO:0080181: lateral root branching	5.64E-04
28	GO:0055088: lipid homeostasis	5.64E-04
29	GO:0050684: regulation of mRNA processing	5.64E-04
30	GO:0019521: D-gluconate metabolic process	5.64E-04
31	GO:0015908: fatty acid transport	5.64E-04
32	GO:0051258: protein polymerization	5.64E-04
33	GO:0000719: photoreactive repair	5.64E-04
34	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	5.64E-04
35	GO:0019725: cellular homeostasis	5.64E-04
36	GO:0010200: response to chitin	6.17E-04
37	GO:0010311: lateral root formation	6.95E-04
38	GO:0009407: toxin catabolic process	7.38E-04
39	GO:0010186: positive regulation of cellular defense response	9.15E-04
40	GO:0010366: negative regulation of ethylene biosynthetic process	9.15E-04
41	GO:0015695: organic cation transport	9.15E-04
42	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	9.15E-04
43	GO:0002230: positive regulation of defense response to virus by host	9.15E-04
44	GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	9.15E-04
45	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	9.15E-04
46	GO:0032784: regulation of DNA-templated transcription, elongation	9.15E-04
47	GO:0006979: response to oxidative stress	9.68E-04
48	GO:0051707: response to other organism	1.20E-03
49	GO:0006020: inositol metabolic process	1.31E-03
50	GO:0070301: cellular response to hydrogen peroxide	1.31E-03
51	GO:0015696: ammonium transport	1.31E-03
52	GO:0051289: protein homotetramerization	1.31E-03
53	GO:1902290: positive regulation of defense response to oomycetes	1.31E-03
54	GO:0015031: protein transport	1.60E-03
55	GO:0006012: galactose metabolic process	1.63E-03
56	GO:1901141: regulation of lignin biosynthetic process	1.75E-03
57	GO:0060548: negative regulation of cell death	1.75E-03
58	GO:0048830: adventitious root development	1.75E-03
59	GO:0072488: ammonium transmembrane transport	1.75E-03
60	GO:0006621: protein retention in ER lumen	1.75E-03
61	GO:0051567: histone H3-K9 methylation	1.75E-03
62	GO:1901002: positive regulation of response to salt stress	1.75E-03
63	GO:0042391: regulation of membrane potential	2.07E-03
64	GO:0031365: N-terminal protein amino acid modification	2.23E-03
65	GO:0016094: polyprenol biosynthetic process	2.23E-03
66	GO:0009164: nucleoside catabolic process	2.23E-03
67	GO:0046283: anthocyanin-containing compound metabolic process	2.23E-03
68	GO:0006952: defense response	2.51E-03
69	GO:0006623: protein targeting to vacuole	2.57E-03
70	GO:0010256: endomembrane system organization	2.75E-03
71	GO:0006891: intra-Golgi vesicle-mediated transport	2.75E-03
72	GO:0002238: response to molecule of fungal origin	2.75E-03
73	GO:0009643: photosynthetic acclimation	2.75E-03
74	GO:0042372: phylloquinone biosynthetic process	3.30E-03
75	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	3.89E-03
76	GO:1900056: negative regulation of leaf senescence	3.89E-03
77	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	3.89E-03
78	GO:0009627: systemic acquired resistance	4.44E-03
79	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.52E-03
80	GO:0030091: protein repair	4.52E-03
81	GO:0043068: positive regulation of programmed cell death	4.52E-03
82	GO:0009751: response to salicylic acid	4.86E-03
83	GO:0030968: endoplasmic reticulum unfolded protein response	5.18E-03
84	GO:0017004: cytochrome complex assembly	5.18E-03
85	GO:0010208: pollen wall assembly	5.18E-03
86	GO:0006997: nucleus organization	5.18E-03
87	GO:0010204: defense response signaling pathway, resistance gene-independent	5.18E-03
88	GO:0009835: fruit ripening	5.86E-03
89	GO:0046685: response to arsenic-containing substance	5.86E-03
90	GO:0006098: pentose-phosphate shunt	5.86E-03
91	GO:0019432: triglyceride biosynthetic process	5.86E-03
92	GO:0051865: protein autoubiquitination	5.86E-03
93	GO:1900426: positive regulation of defense response to bacterium	6.58E-03
94	GO:0090332: stomatal closure	6.58E-03
95	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	6.58E-03
96	GO:0009617: response to bacterium	6.88E-03
97	GO:0009641: shade avoidance	7.33E-03
98	GO:0019538: protein metabolic process	7.33E-03
99	GO:0009870: defense response signaling pathway, resistance gene-dependent	7.33E-03
100	GO:0006032: chitin catabolic process	7.33E-03
101	GO:0048765: root hair cell differentiation	8.11E-03
102	GO:0009684: indoleacetic acid biosynthetic process	8.11E-03
103	GO:0009682: induced systemic resistance	8.11E-03
104	GO:0052544: defense response by callose deposition in cell wall	8.11E-03
105	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	8.92E-03
106	GO:0012501: programmed cell death	8.92E-03
107	GO:0031347: regulation of defense response	1.03E-02
108	GO:0002237: response to molecule of bacterial origin	1.06E-02
109	GO:0006812: cation transport	1.06E-02
110	GO:0006813: potassium ion transport	1.14E-02
111	GO:0009225: nucleotide-sugar metabolic process	1.15E-02
112	GO:0042343: indole glucosinolate metabolic process	1.15E-02
113	GO:0009611: response to wounding	1.23E-02
114	GO:0000162: tryptophan biosynthetic process	1.24E-02
115	GO:0080147: root hair cell development	1.34E-02
116	GO:0051302: regulation of cell division	1.43E-02
117	GO:0006874: cellular calcium ion homeostasis	1.43E-02
118	GO:0010026: trichome differentiation	1.43E-02
119	GO:0043622: cortical microtubule organization	1.43E-02
120	GO:0016998: cell wall macromolecule catabolic process	1.53E-02
121	GO:0098542: defense response to other organism	1.53E-02
122	GO:0009269: response to desiccation	1.53E-02
123	GO:0071456: cellular response to hypoxia	1.64E-02
124	GO:0006886: intracellular protein transport	1.65E-02
125	GO:0009625: response to insect	1.74E-02
126	GO:0009693: ethylene biosynthetic process	1.74E-02
127	GO:0009411: response to UV	1.74E-02
128	GO:0042147: retrograde transport, endosome to Golgi	1.95E-02
129	GO:0070417: cellular response to cold	1.95E-02
130	GO:0006629: lipid metabolic process	2.06E-02
131	GO:0048868: pollen tube development	2.18E-02
132	GO:0046323: glucose import	2.18E-02
133	GO:0006885: regulation of pH	2.18E-02
134	GO:0006520: cellular amino acid metabolic process	2.18E-02
135	GO:0005975: carbohydrate metabolic process	2.20E-02
136	GO:0006814: sodium ion transport	2.29E-02
137	GO:0009646: response to absence of light	2.29E-02
138	GO:0000302: response to reactive oxygen species	2.53E-02
139	GO:0010150: leaf senescence	2.83E-02
140	GO:0007166: cell surface receptor signaling pathway	3.23E-02
141	GO:0006468: protein phosphorylation	3.28E-02
142	GO:0009615: response to virus	3.29E-02
143	GO:0009816: defense response to bacterium, incompatible interaction	3.42E-02
144	GO:0009737: response to abscisic acid	3.87E-02
145	GO:0009817: defense response to fungus, incompatible interaction	3.97E-02
146	GO:0007568: aging	4.41E-02
147	GO:0009631: cold acclimation	4.41E-02
148	GO:0048527: lateral root development	4.41E-02
149	GO:0006099: tricarboxylic acid cycle	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0005365: myo-inositol transmembrane transporter activity	0.00E+00
2	GO:0015576: sorbitol transmembrane transporter activity	0.00E+00
3	GO:0051670: inulinase activity	0.00E+00
4	GO:0004610: phosphoacetylglucosamine mutase activity	0.00E+00
5	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
6	GO:0015575: mannitol transmembrane transporter activity	0.00E+00
7	GO:0015591: D-ribose transmembrane transporter activity	0.00E+00
8	GO:0015148: D-xylose transmembrane transporter activity	0.00E+00
9	GO:0004033: aldo-keto reductase (NADP) activity	2.38E-04
10	GO:0015245: fatty acid transporter activity	2.55E-04
11	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.55E-04
12	GO:0090353: polygalacturonase inhibitor activity	2.55E-04
13	GO:0016229: steroid dehydrogenase activity	2.55E-04
14	GO:2001227: quercitrin binding	2.55E-04
15	GO:0070401: NADP+ binding	2.55E-04
16	GO:0051669: fructan beta-fructosidase activity	2.55E-04
17	GO:0047940: glucuronokinase activity	2.55E-04
18	GO:0031219: levanase activity	2.55E-04
19	GO:0015168: glycerol transmembrane transporter activity	2.55E-04
20	GO:2001147: camalexin binding	2.55E-04
21	GO:0050736: O-malonyltransferase activity	5.64E-04
22	GO:0019172: glyoxalase III activity	5.64E-04
23	GO:0004806: triglyceride lipase activity	5.73E-04
24	GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity	9.15E-04
25	GO:0043169: cation binding	9.15E-04
26	GO:0032403: protein complex binding	9.15E-04
27	GO:0030552: cAMP binding	9.26E-04
28	GO:0030553: cGMP binding	9.26E-04
29	GO:0004364: glutathione transferase activity	1.14E-03
30	GO:0005216: ion channel activity	1.25E-03
31	GO:0005354: galactose transmembrane transporter activity	1.31E-03
32	GO:0005432: calcium:sodium antiporter activity	1.31E-03
33	GO:0035529: NADH pyrophosphatase activity	1.31E-03
34	GO:0008106: alcohol dehydrogenase (NADP+) activity	1.31E-03
35	GO:0010178: IAA-amino acid conjugate hydrolase activity	1.31E-03
36	GO:0046923: ER retention sequence binding	1.75E-03
37	GO:0050378: UDP-glucuronate 4-epimerase activity	1.75E-03
38	GO:0009916: alternative oxidase activity	1.75E-03
39	GO:0005249: voltage-gated potassium channel activity	2.07E-03
40	GO:0030551: cyclic nucleotide binding	2.07E-03
41	GO:0047631: ADP-ribose diphosphatase activity	2.23E-03
42	GO:0015145: monosaccharide transmembrane transporter activity	2.23E-03
43	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.23E-03
44	GO:0002094: polyprenyltransferase activity	2.23E-03
45	GO:0016301: kinase activity	2.33E-03
46	GO:0008200: ion channel inhibitor activity	2.75E-03
47	GO:0008519: ammonium transmembrane transporter activity	2.75E-03
48	GO:0000210: NAD+ diphosphatase activity	2.75E-03
49	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	3.30E-03
50	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.30E-03
51	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	3.30E-03
52	GO:0003978: UDP-glucose 4-epimerase activity	3.30E-03
53	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.30E-03
54	GO:0004144: diacylglycerol O-acyltransferase activity	3.30E-03
55	GO:0004656: procollagen-proline 4-dioxygenase activity	3.30E-03
56	GO:0008235: metalloexopeptidase activity	3.89E-03
57	GO:0008320: protein transmembrane transporter activity	3.89E-03
58	GO:0043295: glutathione binding	3.89E-03
59	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	4.52E-03
60	GO:0004034: aldose 1-epimerase activity	4.52E-03
61	GO:0005544: calcium-dependent phospholipid binding	4.52E-03
62	GO:0015491: cation:cation antiporter activity	4.52E-03
63	GO:0030247: polysaccharide binding	4.68E-03
64	GO:0016787: hydrolase activity	5.01E-03
65	GO:0047617: acyl-CoA hydrolase activity	6.58E-03
66	GO:0004568: chitinase activity	7.33E-03
67	GO:0004177: aminopeptidase activity	8.11E-03
68	GO:0005509: calcium ion binding	9.36E-03
69	GO:0008266: poly(U) RNA binding	1.06E-02
70	GO:0004867: serine-type endopeptidase inhibitor activity	1.15E-02
71	GO:0005217: intracellular ligand-gated ion channel activity	1.15E-02
72	GO:0004970: ionotropic glutamate receptor activity	1.15E-02
73	GO:0001046: core promoter sequence-specific DNA binding	1.34E-02
74	GO:0004871: signal transducer activity	1.68E-02
75	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.75E-02
76	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.85E-02
77	GO:0005451: monovalent cation:proton antiporter activity	2.07E-02
78	GO:0005516: calmodulin binding	2.19E-02
79	GO:0030170: pyridoxal phosphate binding	2.27E-02
80	GO:0016853: isomerase activity	2.29E-02
81	GO:0015299: solute:proton antiporter activity	2.29E-02
82	GO:0005355: glucose transmembrane transporter activity	2.29E-02
83	GO:0050662: coenzyme binding	2.29E-02
84	GO:0004872: receptor activity	2.41E-02
85	GO:0008565: protein transporter activity	2.45E-02
86	GO:0015297: antiporter activity	2.70E-02
87	GO:0015385: sodium:proton antiporter activity	2.78E-02
88	GO:0004674: protein serine/threonine kinase activity	2.90E-02
89	GO:0016791: phosphatase activity	2.90E-02
90	GO:0008483: transaminase activity	3.03E-02
91	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.03E-02
92	GO:0008237: metallopeptidase activity	3.03E-02
93	GO:0008375: acetylglucosaminyltransferase activity	3.56E-02
94	GO:0004683: calmodulin-dependent protein kinase activity	3.70E-02
95	GO:0004721: phosphoprotein phosphatase activity	3.70E-02
96	GO:0003824: catalytic activity	3.87E-02
97	GO:0015238: drug transmembrane transporter activity	4.12E-02
98	GO:0030145: manganese ion binding	4.41E-02
99	GO:0050897: cobalt ion binding	4.41E-02
100	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0019822: P4 peroxisome	0.00E+00
2	GO:0005794: Golgi apparatus	8.39E-06
3	GO:0016021: integral component of membrane	1.19E-04
4	GO:0005802: trans-Golgi network	1.36E-04
5	GO:0045252: oxoglutarate dehydrogenase complex	2.55E-04
6	GO:0005768: endosome	7.56E-04
7	GO:0030658: transport vesicle membrane	1.31E-03
8	GO:0000813: ESCRT I complex	2.23E-03
9	GO:0031965: nuclear membrane	2.57E-03
10	GO:0005886: plasma membrane	4.93E-03
11	GO:0031225: anchored component of membrane	6.85E-03
12	GO:0017119: Golgi transport complex	7.33E-03
13	GO:0046658: anchored component of plasma membrane	7.85E-03
14	GO:0005887: integral component of plasma membrane	7.91E-03
15	GO:0005795: Golgi stack	1.15E-02
16	GO:0070469: respiratory chain	1.43E-02
17	GO:0005770: late endosome	2.18E-02
18	GO:0005789: endoplasmic reticulum membrane	2.23E-02
19	GO:0019898: extrinsic component of membrane	2.41E-02
20	GO:0009504: cell plate	2.41E-02
21	GO:0009705: plant-type vacuole membrane	2.83E-02
22	GO:0032580: Golgi cisterna membrane	2.90E-02
23	GO:0005788: endoplasmic reticulum lumen	3.42E-02
24	GO:0005618: cell wall	4.52E-02
25	GO:0009505: plant-type cell wall	4.68E-02