co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G28720

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006490: oligosaccharide-lipid intermediate biosynthetic process	0.00E+00
2	GO:0006511: ubiquitin-dependent protein catabolic process	3.39E-08
3	GO:0043687: post-translational protein modification	1.30E-05
4	GO:0051258: protein polymerization	3.42E-05
5	GO:0051211: anisotropic cell growth	6.16E-05
6	GO:0010387: COP9 signalosome assembly	1.30E-04
7	GO:0018279: protein N-linked glycosylation via asparagine	1.68E-04
8	GO:0047484: regulation of response to osmotic stress	2.10E-04
9	GO:0000338: protein deneddylation	2.99E-04
10	GO:0006896: Golgi to vacuole transport	5.49E-04
11	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	6.66E-04
12	GO:0010075: regulation of meristem growth	7.14E-04
13	GO:0009934: regulation of meristem structural organization	7.72E-04
14	GO:0034976: response to endoplasmic reticulum stress	8.91E-04
15	GO:0043622: cortical microtubule organization	1.01E-03
16	GO:0030433: ubiquitin-dependent ERAD pathway	1.14E-03
17	GO:0016226: iron-sulfur cluster assembly	1.14E-03
18	GO:0009306: protein secretion	1.27E-03
19	GO:0042147: retrograde transport, endosome to Golgi	1.34E-03
20	GO:0051028: mRNA transport	1.34E-03
21	GO:0000413: protein peptidyl-prolyl isomerization	1.41E-03
22	GO:0071472: cellular response to salt stress	1.48E-03
23	GO:0006914: autophagy	1.94E-03
24	GO:0016579: protein deubiquitination	2.10E-03
25	GO:0010411: xyloglucan metabolic process	2.43E-03
26	GO:0009640: photomorphogenesis	3.63E-03
27	GO:0006457: protein folding	3.64E-03
28	GO:0042546: cell wall biogenesis	3.73E-03
29	GO:0000209: protein polyubiquitination	3.73E-03
30	GO:0006486: protein glycosylation	4.44E-03
31	GO:0009585: red, far-red light phototransduction	4.44E-03
32	GO:0015031: protein transport	7.21E-03
33	GO:0009409: response to cold	7.68E-03
34	GO:0046686: response to cadmium ion	8.84E-03
35	GO:0009826: unidimensional cell growth	1.09E-02
36	GO:0007275: multicellular organism development	1.12E-02
37	GO:0032259: methylation	1.67E-02
38	GO:0048364: root development	1.77E-02
39	GO:0009753: response to jasmonic acid	1.81E-02
40	GO:0009651: response to salt stress	1.91E-02
41	GO:0009416: response to light stimulus	2.59E-02
42	GO:0009414: response to water deprivation	4.21E-02
43	GO:0071555: cell wall organization	4.29E-02
44	GO:0006979: response to oxidative stress	4.31E-02

Rank	GO Term	Adjusted P value
1	GO:0052926: dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity	0.00E+00
2	GO:0052918: dol-P-Man:Man(8)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity	0.00E+00
3	GO:0004377: GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity	0.00E+00
4	GO:0000026: alpha-1,2-mannosyltransferase activity	0.00E+00
5	GO:0004298: threonine-type endopeptidase activity	1.33E-07
6	GO:0004047: aminomethyltransferase activity	3.42E-05
7	GO:0018708: thiol S-methyltransferase activity	3.42E-05
8	GO:0008233: peptidase activity	7.39E-05
9	GO:0004576: oligosaccharyl transferase activity	1.30E-04
10	GO:0019905: syntaxin binding	1.30E-04
11	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.68E-04
12	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	7.14E-04
13	GO:0043130: ubiquitin binding	9.51E-04
14	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.08E-03
15	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.70E-03
16	GO:0004197: cysteine-type endopeptidase activity	1.78E-03
17	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.43E-03
18	GO:0004222: metalloendopeptidase activity	2.78E-03
19	GO:0000166: nucleotide binding	2.82E-03
20	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.03E-03
21	GO:0031625: ubiquitin protein ligase binding	4.76E-03
22	GO:0051082: unfolded protein binding	5.66E-03
23	GO:0008168: methyltransferase activity	1.09E-02
24	GO:0000287: magnesium ion binding	1.11E-02
25	GO:0061630: ubiquitin protein ligase activity	1.35E-02
26	GO:0016887: ATPase activity	2.35E-02
27	GO:0016740: transferase activity	2.99E-02
28	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.16E-02
29	GO:0030246: carbohydrate binding	3.20E-02
30	GO:0003824: catalytic activity	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	7.22E-08
2	GO:0005839: proteasome core complex	1.33E-07
3	GO:0019773: proteasome core complex, alpha-subunit complex	2.89E-06
4	GO:0019774: proteasome core complex, beta-subunit complex	1.30E-05
5	GO:0005773: vacuole	1.65E-04
6	GO:0008250: oligosaccharyltransferase complex	1.68E-04
7	GO:0010005: cortical microtubule, transverse to long axis	2.53E-04
8	GO:0005783: endoplasmic reticulum	2.82E-04
9	GO:0008180: COP9 signalosome	4.45E-04
10	GO:0005876: spindle microtubule	4.96E-04
11	GO:0055028: cortical microtubule	5.49E-04
12	GO:0008541: proteasome regulatory particle, lid subcomplex	6.03E-04
13	GO:0009574: preprophase band	7.14E-04
14	GO:0005788: endoplasmic reticulum lumen	2.26E-03
15	GO:0005643: nuclear pore	2.61E-03
16	GO:0005774: vacuolar membrane	3.37E-03
17	GO:0048046: apoplast	3.59E-03
18	GO:0005635: nuclear envelope	4.65E-03
19	GO:0009507: chloroplast	5.88E-03
20	GO:0005737: cytoplasm	6.83E-03
21	GO:0009524: phragmoplast	6.85E-03
22	GO:0005759: mitochondrial matrix	7.74E-03
23	GO:0022627: cytosolic small ribosomal subunit	1.01E-02
24	GO:0005829: cytosol	1.20E-02
25	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.20E-02
26	GO:0009506: plasmodesma	1.85E-02
27	GO:0005618: cell wall	2.26E-02
28	GO:0022626: cytosolic ribosome	2.51E-02