co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G28510

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
2	GO:0006903: vesicle targeting	0.00E+00
3	GO:0070070: proton-transporting V-type ATPase complex assembly	0.00E+00
4	GO:0097250: mitochondrial respiratory chain supercomplex assembly	0.00E+00
5	GO:0046680: response to DDT	0.00E+00
6	GO:0030163: protein catabolic process	5.77E-05
7	GO:1900424: regulation of defense response to bacterium	1.04E-04
8	GO:0035266: meristem growth	1.04E-04
9	GO:0007292: female gamete generation	1.04E-04
10	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.04E-04
11	GO:0000032: cell wall mannoprotein biosynthetic process	1.04E-04
12	GO:0055046: microgametogenesis	2.14E-04
13	GO:0009156: ribonucleoside monophosphate biosynthetic process	2.44E-04
14	GO:0015709: thiosulfate transport	2.44E-04
15	GO:0071422: succinate transmembrane transport	2.44E-04
16	GO:0009805: coumarin biosynthetic process	2.44E-04
17	GO:0042853: L-alanine catabolic process	2.44E-04
18	GO:0051788: response to misfolded protein	2.44E-04
19	GO:0080026: response to indolebutyric acid	2.44E-04
20	GO:0010253: UDP-rhamnose biosynthetic process	4.05E-04
21	GO:0033591: response to L-ascorbic acid	4.05E-04
22	GO:0060968: regulation of gene silencing	4.05E-04
23	GO:0009062: fatty acid catabolic process	4.05E-04
24	GO:0030433: ubiquitin-dependent ERAD pathway	4.52E-04
25	GO:0080024: indolebutyric acid metabolic process	5.82E-04
26	GO:0009298: GDP-mannose biosynthetic process	5.82E-04
27	GO:0070072: vacuolar proton-transporting V-type ATPase complex assembly	5.82E-04
28	GO:0015729: oxaloacetate transport	5.82E-04
29	GO:0006612: protein targeting to membrane	5.82E-04
30	GO:0006893: Golgi to plasma membrane transport	5.82E-04
31	GO:0048577: negative regulation of short-day photoperiodism, flowering	5.82E-04
32	GO:0009165: nucleotide biosynthetic process	7.73E-04
33	GO:1902584: positive regulation of response to water deprivation	7.73E-04
34	GO:0045927: positive regulation of growth	9.77E-04
35	GO:0071423: malate transmembrane transport	9.77E-04
36	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.19E-03
37	GO:0048827: phyllome development	1.19E-03
38	GO:0048232: male gamete generation	1.19E-03
39	GO:0006555: methionine metabolic process	1.19E-03
40	GO:0043248: proteasome assembly	1.19E-03
41	GO:0042176: regulation of protein catabolic process	1.19E-03
42	GO:0010315: auxin efflux	1.19E-03
43	GO:0007035: vacuolar acidification	1.19E-03
44	GO:0035435: phosphate ion transmembrane transport	1.19E-03
45	GO:0080113: regulation of seed growth	1.43E-03
46	GO:0019509: L-methionine salvage from methylthioadenosine	1.43E-03
47	GO:0034389: lipid particle organization	1.43E-03
48	GO:0006744: ubiquinone biosynthetic process	1.67E-03
49	GO:0080186: developmental vegetative growth	1.67E-03
50	GO:0008272: sulfate transport	1.67E-03
51	GO:0045087: innate immune response	1.90E-03
52	GO:0006102: isocitrate metabolic process	1.93E-03
53	GO:0010078: maintenance of root meristem identity	1.93E-03
54	GO:0009699: phenylpropanoid biosynthetic process	2.21E-03
55	GO:0006002: fructose 6-phosphate metabolic process	2.21E-03
56	GO:0060321: acceptance of pollen	2.21E-03
57	GO:0048354: mucilage biosynthetic process involved in seed coat development	2.79E-03
58	GO:0048829: root cap development	3.10E-03
59	GO:0051555: flavonol biosynthetic process	3.10E-03
60	GO:0010015: root morphogenesis	3.42E-03
61	GO:0072593: reactive oxygen species metabolic process	3.42E-03
62	GO:0043085: positive regulation of catalytic activity	3.42E-03
63	GO:0009933: meristem structural organization	4.44E-03
64	GO:0090351: seedling development	4.80E-03
65	GO:0010053: root epidermal cell differentiation	4.80E-03
66	GO:0009225: nucleotide-sugar metabolic process	4.80E-03
67	GO:0019853: L-ascorbic acid biosynthetic process	4.80E-03
68	GO:0034976: response to endoplasmic reticulum stress	5.18E-03
69	GO:0009116: nucleoside metabolic process	5.56E-03
70	GO:0008299: isoprenoid biosynthetic process	5.95E-03
71	GO:0019915: lipid storage	6.35E-03
72	GO:0006366: transcription from RNA polymerase II promoter	6.35E-03
73	GO:0019748: secondary metabolic process	6.76E-03
74	GO:0030245: cellulose catabolic process	6.76E-03
75	GO:0009561: megagametogenesis	7.61E-03
76	GO:0042127: regulation of cell proliferation	7.61E-03
77	GO:0015991: ATP hydrolysis coupled proton transport	8.49E-03
78	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	8.95E-03
79	GO:0015986: ATP synthesis coupled proton transport	9.42E-03
80	GO:0009646: response to absence of light	9.42E-03
81	GO:0046686: response to cadmium ion	9.98E-03
82	GO:0006635: fatty acid beta-oxidation	1.04E-02
83	GO:0016032: viral process	1.09E-02
84	GO:0009567: double fertilization forming a zygote and endosperm	1.19E-02
85	GO:0019760: glucosinolate metabolic process	1.19E-02
86	GO:0006904: vesicle docking involved in exocytosis	1.24E-02
87	GO:0006511: ubiquitin-dependent protein catabolic process	1.28E-02
88	GO:0009860: pollen tube growth	1.34E-02
89	GO:0001666: response to hypoxia	1.35E-02
90	GO:0009627: systemic acquired resistance	1.45E-02
91	GO:0048573: photoperiodism, flowering	1.51E-02
92	GO:0006950: response to stress	1.51E-02
93	GO:0048767: root hair elongation	1.68E-02
94	GO:0010311: lateral root formation	1.68E-02
95	GO:0006499: N-terminal protein myristoylation	1.74E-02
96	GO:0009407: toxin catabolic process	1.74E-02
97	GO:0010043: response to zinc ion	1.80E-02
98	GO:0007568: aging	1.80E-02
99	GO:0009910: negative regulation of flower development	1.80E-02
100	GO:0045454: cell redox homeostasis	1.85E-02
101	GO:0006099: tricarboxylic acid cycle	1.98E-02
102	GO:0006839: mitochondrial transport	2.11E-02
103	GO:0006887: exocytosis	2.17E-02
104	GO:0009751: response to salicylic acid	2.24E-02
105	GO:0009408: response to heat	2.28E-02
106	GO:0009744: response to sucrose	2.30E-02
107	GO:0051707: response to other organism	2.30E-02
108	GO:0000209: protein polyubiquitination	2.37E-02
109	GO:0009636: response to toxic substance	2.50E-02
110	GO:0009965: leaf morphogenesis	2.50E-02
111	GO:0000165: MAPK cascade	2.64E-02
112	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.64E-02
113	GO:0009846: pollen germination	2.70E-02
114	GO:0006486: protein glycosylation	2.84E-02
115	GO:0051603: proteolysis involved in cellular protein catabolic process	2.91E-02
116	GO:0006096: glycolytic process	3.20E-02
117	GO:0048367: shoot system development	3.28E-02
118	GO:0006810: transport	3.41E-02
119	GO:0051726: regulation of cell cycle	3.81E-02
120	GO:0009555: pollen development	4.03E-02
121	GO:0009058: biosynthetic process	4.45E-02
122	GO:0009790: embryo development	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0016504: peptidase activator activity	0.00E+00
2	GO:0070577: lysine-acetylated histone binding	0.00E+00
3	GO:0019211: phosphatase activator activity	0.00E+00
4	GO:0004476: mannose-6-phosphate isomerase activity	1.04E-04
5	GO:0010297: heteropolysaccharide binding	2.44E-04
6	GO:0008460: dTDP-glucose 4,6-dehydratase activity	2.44E-04
7	GO:0010280: UDP-L-rhamnose synthase activity	2.44E-04
8	GO:0050347: trans-octaprenyltranstransferase activity	2.44E-04
9	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	2.44E-04
10	GO:0008805: carbon-monoxide oxygenase activity	2.44E-04
11	GO:0050377: UDP-glucose 4,6-dehydratase activity	2.44E-04
12	GO:0015117: thiosulfate transmembrane transporter activity	2.44E-04
13	GO:1990585: hydroxyproline O-arabinosyltransferase activity	2.44E-04
14	GO:1901677: phosphate transmembrane transporter activity	2.44E-04
15	GO:0004190: aspartic-type endopeptidase activity	2.74E-04
16	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	4.05E-04
17	GO:0005310: dicarboxylic acid transmembrane transporter activity	4.05E-04
18	GO:0015141: succinate transmembrane transporter activity	4.05E-04
19	GO:0004165: dodecenoyl-CoA delta-isomerase activity	5.82E-04
20	GO:0017077: oxidative phosphorylation uncoupler activity	5.82E-04
21	GO:0004749: ribose phosphate diphosphokinase activity	5.82E-04
22	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	5.82E-04
23	GO:0004449: isocitrate dehydrogenase (NAD+) activity	5.82E-04
24	GO:0015131: oxaloacetate transmembrane transporter activity	5.82E-04
25	GO:0004659: prenyltransferase activity	7.73E-04
26	GO:0070628: proteasome binding	7.73E-04
27	GO:0004040: amidase activity	9.77E-04
28	GO:0036402: proteasome-activating ATPase activity	1.19E-03
29	GO:0031593: polyubiquitin binding	1.19E-03
30	GO:0051117: ATPase binding	1.19E-03
31	GO:0016887: ATPase activity	1.42E-03
32	GO:0003950: NAD+ ADP-ribosyltransferase activity	1.43E-03
33	GO:0003872: 6-phosphofructokinase activity	1.67E-03
34	GO:0015140: malate transmembrane transporter activity	1.67E-03
35	GO:0003746: translation elongation factor activity	1.90E-03
36	GO:0030234: enzyme regulator activity	3.10E-03
37	GO:0004161: dimethylallyltranstransferase activity	3.42E-03
38	GO:0046961: proton-transporting ATPase activity, rotational mechanism	3.42E-03
39	GO:0031625: ubiquitin protein ligase binding	3.62E-03
40	GO:0015116: sulfate transmembrane transporter activity	3.75E-03
41	GO:0004867: serine-type endopeptidase inhibitor activity	4.80E-03
42	GO:0017025: TBP-class protein binding	4.80E-03
43	GO:0004725: protein tyrosine phosphatase activity	5.18E-03
44	GO:0043130: ubiquitin binding	5.56E-03
45	GO:0001046: core promoter sequence-specific DNA binding	5.56E-03
46	GO:0008810: cellulase activity	7.18E-03
47	GO:0003756: protein disulfide isomerase activity	7.61E-03
48	GO:0016853: isomerase activity	9.42E-03
49	GO:0008237: metallopeptidase activity	1.24E-02
50	GO:0051213: dioxygenase activity	1.35E-02
51	GO:0004721: phosphoprotein phosphatase activity	1.51E-02
52	GO:0061630: ubiquitin protein ligase activity	1.62E-02
53	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.62E-02
54	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.80E-02
55	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.92E-02
56	GO:0004364: glutathione transferase activity	2.24E-02
57	GO:0003824: catalytic activity	2.38E-02
58	GO:0009055: electron carrier activity	2.44E-02
59	GO:0022857: transmembrane transporter activity	3.50E-02
60	GO:0015035: protein disulfide oxidoreductase activity	3.73E-02
61	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.37E-02
62	GO:0030170: pyridoxal phosphate binding	4.62E-02
63	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	2.57E-05
2	GO:0012510: trans-Golgi network transport vesicle membrane	1.04E-04
3	GO:0008541: proteasome regulatory particle, lid subcomplex	1.61E-04
4	GO:0016471: vacuolar proton-transporting V-type ATPase complex	7.73E-04
5	GO:0016592: mediator complex	8.74E-04
6	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	9.77E-04
7	GO:0005945: 6-phosphofructokinase complex	9.77E-04
8	GO:0005788: endoplasmic reticulum lumen	1.23E-03
9	GO:0031597: cytosolic proteasome complex	1.43E-03
10	GO:0031595: nuclear proteasome complex	1.67E-03
11	GO:0031982: vesicle	1.93E-03
12	GO:0005811: lipid particle	2.21E-03
13	GO:0008540: proteasome regulatory particle, base subcomplex	2.79E-03
14	GO:0005839: proteasome core complex	6.35E-03
15	GO:0005744: mitochondrial inner membrane presequence translocase complex	7.61E-03
16	GO:0000145: exocyst	1.09E-02
17	GO:0016021: integral component of membrane	1.60E-02
18	GO:0000325: plant-type vacuole	1.80E-02
19	GO:0005856: cytoskeleton	2.50E-02
20	GO:0009536: plastid	2.73E-02
21	GO:0005794: Golgi apparatus	2.98E-02
22	GO:0009524: phragmoplast	4.45E-02