Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G28340

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046865: terpenoid transport0.00E+00
2GO:0010324: membrane invagination0.00E+00
3GO:0071327: cellular response to trehalose stimulus0.00E+00
4GO:0010055: atrichoblast differentiation0.00E+00
5GO:0043048: dolichyl monophosphate biosynthetic process0.00E+00
6GO:1902001: fatty acid transmembrane transport0.00E+00
7GO:0032260: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance0.00E+00
8GO:1900067: regulation of cellular response to alkaline pH0.00E+00
9GO:0090359: negative regulation of abscisic acid biosynthetic process0.00E+00
10GO:0009312: oligosaccharide biosynthetic process0.00E+00
11GO:0015690: aluminum cation transport0.00E+00
12GO:1900367: positive regulation of defense response to insect0.00E+00
13GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
14GO:0060548: negative regulation of cell death9.70E-09
15GO:0006952: defense response6.42E-07
16GO:0009751: response to salicylic acid6.55E-07
17GO:0009753: response to jasmonic acid9.92E-07
18GO:0010200: response to chitin1.17E-06
19GO:0010112: regulation of systemic acquired resistance1.75E-06
20GO:0071456: cellular response to hypoxia2.10E-06
21GO:0042742: defense response to bacterium9.76E-06
22GO:0006979: response to oxidative stress1.02E-05
23GO:0019725: cellular homeostasis1.33E-05
24GO:0009737: response to abscisic acid2.37E-05
25GO:0010186: positive regulation of cellular defense response4.45E-05
26GO:2000022: regulation of jasmonic acid mediated signaling pathway4.73E-05
27GO:0010150: leaf senescence5.30E-05
28GO:0009625: response to insect5.63E-05
29GO:0009611: response to wounding6.05E-05
30GO:0006468: protein phosphorylation7.67E-05
31GO:0009867: jasmonic acid mediated signaling pathway8.73E-05
32GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway8.79E-05
33GO:1903507: negative regulation of nucleic acid-templated transcription1.40E-04
34GO:0045227: capsule polysaccharide biosynthetic process1.63E-04
35GO:0033358: UDP-L-arabinose biosynthetic process1.63E-04
36GO:0031347: regulation of defense response2.21E-04
37GO:0009643: photosynthetic acclimation3.49E-04
38GO:0007166: cell surface receptor signaling pathway4.15E-04
39GO:0042759: long-chain fatty acid biosynthetic process5.51E-04
40GO:0009968: negative regulation of signal transduction5.51E-04
41GO:1990542: mitochondrial transmembrane transport5.51E-04
42GO:0032107: regulation of response to nutrient levels5.51E-04
43GO:0048508: embryonic meristem development5.51E-04
44GO:0015760: glucose-6-phosphate transport5.51E-04
45GO:0046256: 2,4,6-trinitrotoluene catabolic process5.51E-04
46GO:0043547: positive regulation of GTPase activity5.51E-04
47GO:0019567: arabinose biosynthetic process5.51E-04
48GO:0080173: male-female gamete recognition during double fertilization5.51E-04
49GO:1901183: positive regulation of camalexin biosynthetic process5.51E-04
50GO:0033306: phytol metabolic process5.51E-04
51GO:0009270: response to humidity5.51E-04
52GO:0009700: indole phytoalexin biosynthetic process5.51E-04
53GO:0050691: regulation of defense response to virus by host5.51E-04
54GO:0031348: negative regulation of defense response5.60E-04
55GO:1900056: negative regulation of leaf senescence5.95E-04
56GO:0006012: galactose metabolic process6.27E-04
57GO:0030091: protein repair7.41E-04
58GO:0042391: regulation of membrane potential8.54E-04
59GO:2000031: regulation of salicylic acid mediated signaling pathway9.02E-04
60GO:0010120: camalexin biosynthetic process9.02E-04
61GO:0051707: response to other organism9.42E-04
62GO:0009646: response to absence of light1.03E-03
63GO:0006098: pentose-phosphate shunt1.08E-03
64GO:0009749: response to glucose1.12E-03
65GO:0015712: hexose phosphate transport1.19E-03
66GO:0051258: protein polymerization1.19E-03
67GO:0071668: plant-type cell wall assembly1.19E-03
68GO:0009446: putrescine biosynthetic process1.19E-03
69GO:0015914: phospholipid transport1.19E-03
70GO:0006123: mitochondrial electron transport, cytochrome c to oxygen1.19E-03
71GO:0080151: positive regulation of salicylic acid mediated signaling pathway1.19E-03
72GO:0009838: abscission1.19E-03
73GO:0010618: aerenchyma formation1.19E-03
74GO:0006527: arginine catabolic process1.19E-03
75GO:0080181: lateral root branching1.19E-03
76GO:0055088: lipid homeostasis1.19E-03
77GO:0019521: D-gluconate metabolic process1.19E-03
78GO:0010115: regulation of abscisic acid biosynthetic process1.19E-03
79GO:0015865: purine nucleotide transport1.19E-03
80GO:0015908: fatty acid transport1.19E-03
81GO:0010271: regulation of chlorophyll catabolic process1.19E-03
82GO:0044419: interspecies interaction between organisms1.19E-03
83GO:0009945: radial axis specification1.19E-03
84GO:0010193: response to ozone1.22E-03
85GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway1.95E-03
86GO:0035436: triose phosphate transmembrane transport1.95E-03
87GO:0045793: positive regulation of cell size1.95E-03
88GO:0015692: lead ion transport1.95E-03
89GO:0015714: phosphoenolpyruvate transport1.95E-03
90GO:0015695: organic cation transport1.95E-03
91GO:0080168: abscisic acid transport1.95E-03
92GO:1900055: regulation of leaf senescence1.95E-03
93GO:0006954: inflammatory response1.95E-03
94GO:0034051: negative regulation of plant-type hypersensitive response1.95E-03
95GO:0010498: proteasomal protein catabolic process1.95E-03
96GO:1900140: regulation of seedling development1.95E-03
97GO:0050832: defense response to fungus2.02E-03
98GO:0009626: plant-type hypersensitive response2.11E-03
99GO:0009266: response to temperature stimulus2.52E-03
100GO:0051289: protein homotetramerization2.82E-03
101GO:0046513: ceramide biosynthetic process2.82E-03
102GO:0046836: glycolipid transport2.82E-03
103GO:0010116: positive regulation of abscisic acid biosynthetic process2.82E-03
104GO:0048194: Golgi vesicle budding2.82E-03
105GO:0046902: regulation of mitochondrial membrane permeability2.82E-03
106GO:0010731: protein glutathionylation2.82E-03
107GO:0015696: ammonium transport2.82E-03
108GO:0009225: nucleotide-sugar metabolic process2.83E-03
109GO:0009407: toxin catabolic process3.12E-03
110GO:2000377: regulation of reactive oxygen species metabolic process3.51E-03
111GO:0015713: phosphoglycerate transport3.81E-03
112GO:0008295: spermidine biosynthetic process3.81E-03
113GO:0080142: regulation of salicylic acid biosynthetic process3.81E-03
114GO:0009694: jasmonic acid metabolic process3.81E-03
115GO:1901141: regulation of lignin biosynthetic process3.81E-03
116GO:0010109: regulation of photosynthesis3.81E-03
117GO:0010483: pollen tube reception3.81E-03
118GO:0048638: regulation of developmental growth3.81E-03
119GO:0009652: thigmotropism3.81E-03
120GO:0072488: ammonium transmembrane transport3.81E-03
121GO:0009414: response to water deprivation4.15E-03
122GO:0080167: response to karrikin4.41E-03
123GO:0010225: response to UV-C4.88E-03
124GO:0009697: salicylic acid biosynthetic process4.88E-03
125GO:0034052: positive regulation of plant-type hypersensitive response4.88E-03
126GO:0009164: nucleoside catabolic process4.88E-03
127GO:0009636: response to toxic substance5.99E-03
128GO:0018258: protein O-linked glycosylation via hydroxyproline6.06E-03
129GO:0002238: response to molecule of fungal origin6.06E-03
130GO:0009759: indole glucosinolate biosynthetic process6.06E-03
131GO:0010942: positive regulation of cell death6.06E-03
132GO:0010405: arabinogalactan protein metabolic process6.06E-03
133GO:0010264: myo-inositol hexakisphosphate biosynthetic process6.06E-03
134GO:0033365: protein localization to organelle6.06E-03
135GO:0006596: polyamine biosynthetic process6.06E-03
136GO:0009117: nucleotide metabolic process6.06E-03
137GO:0006574: valine catabolic process6.06E-03
138GO:0006855: drug transmembrane transport6.29E-03
139GO:0010310: regulation of hydrogen peroxide metabolic process7.32E-03
140GO:0071470: cellular response to osmotic stress7.32E-03
141GO:0042372: phylloquinone biosynthetic process7.32E-03
142GO:0045926: negative regulation of growth7.32E-03
143GO:0009612: response to mechanical stimulus7.32E-03
144GO:0009942: longitudinal axis specification7.32E-03
145GO:0009094: L-phenylalanine biosynthetic process7.32E-03
146GO:0006486: protein glycosylation7.56E-03
147GO:0009617: response to bacterium7.71E-03
148GO:0050829: defense response to Gram-negative bacterium8.66E-03
149GO:1902074: response to salt8.66E-03
150GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway8.66E-03
151GO:0043090: amino acid import8.66E-03
152GO:0071446: cellular response to salicylic acid stimulus8.66E-03
153GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c8.66E-03
154GO:1900057: positive regulation of leaf senescence8.66E-03
155GO:0000122: negative regulation of transcription from RNA polymerase II promoter8.66E-03
156GO:0010928: regulation of auxin mediated signaling pathway1.01E-02
157GO:0009787: regulation of abscisic acid-activated signaling pathway1.01E-02
158GO:0009819: drought recovery1.01E-02
159GO:0043068: positive regulation of programmed cell death1.01E-02
160GO:0006997: nucleus organization1.16E-02
161GO:0010204: defense response signaling pathway, resistance gene-independent1.16E-02
162GO:0010208: pollen wall assembly1.16E-02
163GO:0009624: response to nematode1.19E-02
164GO:0009051: pentose-phosphate shunt, oxidative branch1.32E-02
165GO:0046916: cellular transition metal ion homeostasis1.32E-02
166GO:0019432: triglyceride biosynthetic process1.32E-02
167GO:0009627: systemic acquired resistance1.41E-02
168GO:1900426: positive regulation of defense response to bacterium1.48E-02
169GO:0090332: stomatal closure1.48E-02
170GO:0048268: clathrin coat assembly1.48E-02
171GO:0048354: mucilage biosynthetic process involved in seed coat development1.48E-02
172GO:0010380: regulation of chlorophyll biosynthetic process1.48E-02
173GO:0009870: defense response signaling pathway, resistance gene-dependent1.66E-02
174GO:0006032: chitin catabolic process1.66E-02
175GO:0048229: gametophyte development1.84E-02
176GO:0009684: indoleacetic acid biosynthetic process1.84E-02
177GO:0019684: photosynthesis, light reaction1.84E-02
178GO:0009089: lysine biosynthetic process via diaminopimelate1.84E-02
179GO:0072593: reactive oxygen species metabolic process1.84E-02
180GO:0009682: induced systemic resistance1.84E-02
181GO:0048527: lateral root development1.91E-02
182GO:0010119: regulation of stomatal movement1.91E-02
183GO:0010105: negative regulation of ethylene-activated signaling pathway2.02E-02
184GO:0000266: mitochondrial fission2.02E-02
185GO:0012501: programmed cell death2.02E-02
186GO:0002213: defense response to insect2.02E-02
187GO:0006006: glucose metabolic process2.22E-02
188GO:2000028: regulation of photoperiodism, flowering2.22E-02
189GO:0055046: microgametogenesis2.22E-02
190GO:0007165: signal transduction2.38E-02
191GO:0034605: cellular response to heat2.42E-02
192GO:0002237: response to molecule of bacterial origin2.42E-02
193GO:0006897: endocytosis2.50E-02
194GO:0016567: protein ubiquitination2.56E-02
195GO:0046688: response to copper ion2.62E-02
196GO:0010167: response to nitrate2.62E-02
197GO:0000162: tryptophan biosynthetic process2.83E-02
198GO:0080147: root hair cell development3.05E-02
199GO:0009863: salicylic acid mediated signaling pathway3.05E-02
200GO:0006825: copper ion transport3.27E-02
201GO:0006874: cellular calcium ion homeostasis3.27E-02
202GO:0016998: cell wall macromolecule catabolic process3.50E-02
203GO:0009561: megagametogenesis4.21E-02
204GO:0042127: regulation of cell proliferation4.21E-02
205GO:0070417: cellular response to cold4.46E-02
206GO:0006970: response to osmotic stress4.49E-02
207GO:0000413: protein peptidyl-prolyl isomerization4.71E-02
208GO:0042631: cellular response to water deprivation4.71E-02
209GO:0009723: response to ethylene4.89E-02
210GO:0010182: sugar mediated signaling pathway4.97E-02
211GO:0006885: regulation of pH4.97E-02
212GO:0006520: cellular amino acid metabolic process4.97E-02
RankGO TermAdjusted P value
1GO:0005212: structural constituent of eye lens0.00E+00
2GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
3GO:0004168: dolichol kinase activity0.00E+00
4GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
5GO:0080131: hydroxyjasmonate sulfotransferase activity0.00E+00
6GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
7GO:0003978: UDP-glucose 4-epimerase activity1.54E-05
8GO:0016301: kinase activity3.01E-05
9GO:0050373: UDP-arabinose 4-epimerase activity1.63E-04
10GO:0030552: cAMP binding2.88E-04
11GO:0030553: cGMP binding2.88E-04
12GO:0004674: protein serine/threonine kinase activity3.81E-04
13GO:0003714: transcription corepressor activity3.85E-04
14GO:0005216: ion channel activity4.39E-04
15GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.65E-04
16GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.65E-04
17GO:0004012: phospholipid-translocating ATPase activity4.65E-04
18GO:2001147: camalexin binding5.51E-04
19GO:0008792: arginine decarboxylase activity5.51E-04
20GO:0015245: fatty acid transporter activity5.51E-04
21GO:0010285: L,L-diaminopimelate aminotransferase activity5.51E-04
22GO:2001227: quercitrin binding5.51E-04
23GO:0019707: protein-cysteine S-acyltransferase activity5.51E-04
24GO:0043295: glutathione binding5.95E-04
25GO:0004714: transmembrane receptor protein tyrosine kinase activity7.41E-04
26GO:0005544: calcium-dependent phospholipid binding7.41E-04
27GO:0005249: voltage-gated potassium channel activity8.54E-04
28GO:0030551: cyclic nucleotide binding8.54E-04
29GO:0019901: protein kinase binding1.12E-03
30GO:0004385: guanylate kinase activity1.19E-03
31GO:0048531: beta-1,3-galactosyltransferase activity1.19E-03
32GO:0050291: sphingosine N-acyltransferase activity1.19E-03
33GO:0047364: desulfoglucosinolate sulfotransferase activity1.19E-03
34GO:0015152: glucose-6-phosphate transmembrane transporter activity1.19E-03
35GO:0050403: trans-zeatin O-beta-D-glucosyltransferase activity1.19E-03
36GO:0050502: cis-zeatin O-beta-D-glucosyltransferase activity1.19E-03
37GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.23E-03
38GO:0004568: chitinase activity1.48E-03
39GO:0071917: triose-phosphate transmembrane transporter activity1.95E-03
40GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity1.95E-03
41GO:0004324: ferredoxin-NADP+ reductase activity1.95E-03
42GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity1.95E-03
43GO:0016531: copper chaperone activity1.95E-03
44GO:0032403: protein complex binding1.95E-03
45GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.24E-03
46GO:0017077: oxidative phosphorylation uncoupler activity2.82E-03
47GO:0017089: glycolipid transporter activity2.82E-03
48GO:0008146: sulfotransferase activity2.83E-03
49GO:0001046: core promoter sequence-specific DNA binding3.51E-03
50GO:0005509: calcium ion binding3.62E-03
51GO:0009916: alternative oxidase activity3.81E-03
52GO:0004930: G-protein coupled receptor activity3.81E-03
53GO:0015120: phosphoglycerate transmembrane transporter activity3.81E-03
54GO:0047769: arogenate dehydratase activity3.81E-03
55GO:0004834: tryptophan synthase activity3.81E-03
56GO:0004737: pyruvate decarboxylase activity3.81E-03
57GO:0004345: glucose-6-phosphate dehydrogenase activity3.81E-03
58GO:0004664: prephenate dehydratase activity3.81E-03
59GO:0051861: glycolipid binding3.81E-03
60GO:0033612: receptor serine/threonine kinase binding4.26E-03
61GO:0050661: NADP binding4.41E-03
62GO:0005496: steroid binding4.88E-03
63GO:0047631: ADP-ribose diphosphatase activity4.88E-03
64GO:0005471: ATP:ADP antiporter activity4.88E-03
65GO:0070696: transmembrane receptor protein serine/threonine kinase binding4.88E-03
66GO:0004364: glutathione transferase activity4.90E-03
67GO:0043565: sequence-specific DNA binding4.93E-03
68GO:0005524: ATP binding5.44E-03
69GO:0004499: N,N-dimethylaniline monooxygenase activity5.54E-03
70GO:0008519: ammonium transmembrane transporter activity6.06E-03
71GO:0030976: thiamine pyrophosphate binding6.06E-03
72GO:0004605: phosphatidate cytidylyltransferase activity6.06E-03
73GO:1990714: hydroxyproline O-galactosyltransferase activity6.06E-03
74GO:0000210: NAD+ diphosphatase activity6.06E-03
75GO:0005515: protein binding6.98E-03
76GO:0005261: cation channel activity7.32E-03
77GO:0008113: peptide-methionine (S)-S-oxide reductase activity7.32E-03
78GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides7.32E-03
79GO:0003950: NAD+ ADP-ribosyltransferase activity7.32E-03
80GO:0004144: diacylglycerol O-acyltransferase activity7.32E-03
81GO:0016831: carboxy-lyase activity8.66E-03
82GO:0004033: aldo-keto reductase (NADP) activity1.01E-02
83GO:0004672: protein kinase activity1.08E-02
84GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity1.12E-02
85GO:0008483: transaminase activity1.12E-02
86GO:0071949: FAD binding1.32E-02
87GO:0008375: acetylglucosaminyltransferase activity1.41E-02
88GO:0047617: acyl-CoA hydrolase activity1.48E-02
89GO:0004806: triglyceride lipase activity1.49E-02
90GO:0005507: copper ion binding1.57E-02
91GO:0004497: monooxygenase activity1.59E-02
92GO:0008171: O-methyltransferase activity1.66E-02
93GO:0005545: 1-phosphatidylinositol binding1.66E-02
94GO:0015020: glucuronosyltransferase activity1.66E-02
95GO:0015238: drug transmembrane transporter activity1.74E-02
96GO:0008559: xenobiotic-transporting ATPase activity1.84E-02
97GO:0008378: galactosyltransferase activity2.02E-02
98GO:0005315: inorganic phosphate transmembrane transporter activity2.22E-02
99GO:0015297: antiporter activity2.25E-02
100GO:0004842: ubiquitin-protein transferase activity2.33E-02
101GO:0005217: intracellular ligand-gated ion channel activity2.62E-02
102GO:0004190: aspartic-type endopeptidase activity2.62E-02
103GO:0004970: ionotropic glutamate receptor activity2.62E-02
104GO:0003954: NADH dehydrogenase activity3.05E-02
105GO:0009055: electron carrier activity3.14E-02
106GO:0019706: protein-cysteine S-palmitoyltransferase activity3.50E-02
107GO:0004707: MAP kinase activity3.50E-02
108GO:0016298: lipase activity3.77E-02
109GO:0000287: magnesium ion binding4.00E-02
110GO:0043531: ADP binding4.59E-02
111GO:0005516: calmodulin binding4.60E-02
112GO:0005451: monovalent cation:proton antiporter activity4.71E-02
113GO:0050660: flavin adenine dinucleotide binding4.89E-02
114GO:0005199: structural constituent of cell wall4.97E-02
115GO:0030276: clathrin binding4.97E-02
RankGO TermAdjusted P value
1GO:0019822: P4 peroxisome0.00E+00
2GO:0005886: plasma membrane1.10E-07
3GO:0016021: integral component of membrane1.80E-07
4GO:0000813: ESCRT I complex2.48E-04
5GO:0000138: Golgi trans cisterna5.51E-04
6GO:0005794: Golgi apparatus1.04E-03
7GO:0031304: intrinsic component of mitochondrial inner membrane1.19E-03
8GO:0005901: caveola1.19E-03
9GO:0009530: primary cell wall1.95E-03
10GO:0008287: protein serine/threonine phosphatase complex1.95E-03
11GO:0031012: extracellular matrix2.24E-03
12GO:0070062: extracellular exosome2.82E-03
13GO:0005758: mitochondrial intermembrane space3.51E-03
14GO:0070469: respiratory chain3.87E-03
15GO:0005802: trans-Golgi network7.17E-03
16GO:0016363: nuclear matrix7.32E-03
17GO:0032580: Golgi cisterna membrane1.05E-02
18GO:0005740: mitochondrial envelope1.66E-02
19GO:0005578: proteinaceous extracellular matrix2.22E-02
20GO:0005743: mitochondrial inner membrane2.55E-02
21GO:0005795: Golgi stack2.62E-02
22GO:0030176: integral component of endoplasmic reticulum membrane2.62E-02
23GO:0005769: early endosome2.83E-02
24GO:0005777: peroxisome2.95E-02
25GO:0005905: clathrin-coated pit3.50E-02
26GO:0005741: mitochondrial outer membrane3.50E-02
27GO:0005887: integral component of plasma membrane4.42E-02
28GO:0030136: clathrin-coated vesicle4.46E-02
29GO:0009506: plasmodesma4.71E-02
30GO:0031225: anchored component of membrane4.88E-02
31GO:0005770: late endosome4.97E-02
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Gene type



Gene DE type