co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G26890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045176: apical protein localization	0.00E+00
2	GO:0046460: neutral lipid biosynthetic process	0.00E+00
3	GO:0090355: positive regulation of auxin metabolic process	0.00E+00
4	GO:0043972: histone H3-K23 acetylation	0.00E+00
5	GO:0090358: positive regulation of tryptophan metabolic process	0.00E+00
6	GO:0044154: histone H3-K14 acetylation	0.00E+00
7	GO:1901698: response to nitrogen compound	0.00E+00
8	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.34E-04
9	GO:0048657: anther wall tapetum cell differentiation	2.46E-04
10	GO:0000066: mitochondrial ornithine transport	2.46E-04
11	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.46E-04
12	GO:0051171: regulation of nitrogen compound metabolic process	2.46E-04
13	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	2.46E-04
14	GO:0043971: histone H3-K18 acetylation	2.46E-04
15	GO:0006898: receptor-mediated endocytosis	5.44E-04
16	GO:0080005: photosystem stoichiometry adjustment	5.44E-04
17	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	5.44E-04
18	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.44E-04
19	GO:0048255: mRNA stabilization	5.44E-04
20	GO:0006013: mannose metabolic process	8.83E-04
21	GO:0071705: nitrogen compound transport	8.83E-04
22	GO:0042780: tRNA 3'-end processing	8.83E-04
23	GO:0045493: xylan catabolic process	8.83E-04
24	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	8.83E-04
25	GO:0009451: RNA modification	9.74E-04
26	GO:0009800: cinnamic acid biosynthetic process	1.26E-03
27	GO:0010255: glucose mediated signaling pathway	1.26E-03
28	GO:0019748: secondary metabolic process	1.42E-03
29	GO:0015846: polyamine transport	1.68E-03
30	GO:0071249: cellular response to nitrate	1.68E-03
31	GO:0002229: defense response to oomycetes	2.61E-03
32	GO:0048827: phyllome development	2.65E-03
33	GO:0010315: auxin efflux	2.65E-03
34	GO:0006559: L-phenylalanine catabolic process	2.65E-03
35	GO:0010583: response to cyclopentenone	2.78E-03
36	GO:0009416: response to light stimulus	2.85E-03
37	GO:0034389: lipid particle organization	3.18E-03
38	GO:0006401: RNA catabolic process	3.75E-03
39	GO:0009610: response to symbiotic fungus	3.75E-03
40	GO:0009911: positive regulation of flower development	3.76E-03
41	GO:0006353: DNA-templated transcription, termination	4.35E-03
42	GO:0030091: protein repair	4.35E-03
43	GO:0034968: histone lysine methylation	4.35E-03
44	GO:0007155: cell adhesion	4.35E-03
45	GO:0030244: cellulose biosynthetic process	4.90E-03
46	GO:0010052: guard cell differentiation	4.98E-03
47	GO:0007389: pattern specification process	4.98E-03
48	GO:0044030: regulation of DNA methylation	4.98E-03
49	GO:0006002: fructose 6-phosphate metabolic process	4.98E-03
50	GO:0009827: plant-type cell wall modification	4.98E-03
51	GO:0009834: plant-type secondary cell wall biogenesis	5.41E-03
52	GO:0019432: triglyceride biosynthetic process	5.65E-03
53	GO:0016571: histone methylation	6.33E-03
54	GO:0008202: steroid metabolic process	6.33E-03
55	GO:0010380: regulation of chlorophyll biosynthetic process	6.33E-03
56	GO:0006415: translational termination	7.80E-03
57	GO:0009750: response to fructose	7.80E-03
58	GO:0009826: unidimensional cell growth	8.50E-03
59	GO:0015706: nitrate transport	8.58E-03
60	GO:0010229: inflorescence development	9.38E-03
61	GO:0010540: basipetal auxin transport	1.02E-02
62	GO:0080188: RNA-directed DNA methylation	1.11E-02
63	GO:0010167: response to nitrate	1.11E-02
64	GO:0006863: purine nucleobase transport	1.20E-02
65	GO:0009833: plant-type primary cell wall biogenesis	1.20E-02
66	GO:0006071: glycerol metabolic process	1.20E-02
67	GO:0000162: tryptophan biosynthetic process	1.20E-02
68	GO:0006355: regulation of transcription, DNA-templated	1.26E-02
69	GO:0010187: negative regulation of seed germination	1.29E-02
70	GO:0006289: nucleotide-excision repair	1.29E-02
71	GO:0043622: cortical microtubule organization	1.38E-02
72	GO:0010073: meristem maintenance	1.38E-02
73	GO:0009740: gibberellic acid mediated signaling pathway	1.45E-02
74	GO:0016226: iron-sulfur cluster assembly	1.57E-02
75	GO:0051726: regulation of cell cycle	1.64E-02
76	GO:0009693: ethylene biosynthetic process	1.67E-02
77	GO:0010584: pollen exine formation	1.77E-02
78	GO:0048653: anther development	1.99E-02
79	GO:0048868: pollen tube development	2.09E-02
80	GO:0010268: brassinosteroid homeostasis	2.09E-02
81	GO:0045489: pectin biosynthetic process	2.09E-02
82	GO:0048825: cotyledon development	2.32E-02
83	GO:0009749: response to glucose	2.32E-02
84	GO:0009851: auxin biosynthetic process	2.32E-02
85	GO:0016132: brassinosteroid biosynthetic process	2.43E-02
86	GO:0006633: fatty acid biosynthetic process	2.43E-02
87	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.43E-02
88	GO:0007264: small GTPase mediated signal transduction	2.55E-02
89	GO:0007623: circadian rhythm	2.67E-02
90	GO:0016125: sterol metabolic process	2.79E-02
91	GO:0010252: auxin homeostasis	2.79E-02
92	GO:0009734: auxin-activated signaling pathway	2.96E-02
93	GO:0071555: cell wall organization	3.12E-02
94	GO:0016126: sterol biosynthetic process	3.16E-02
95	GO:0010468: regulation of gene expression	3.19E-02
96	GO:0010411: xyloglucan metabolic process	3.55E-02
97	GO:0016049: cell growth	3.69E-02
98	GO:0008219: cell death	3.82E-02
99	GO:0010311: lateral root formation	3.96E-02
100	GO:0009832: plant-type cell wall biogenesis	3.96E-02
101	GO:0000160: phosphorelay signal transduction system	3.96E-02
102	GO:0009658: chloroplast organization	4.13E-02
103	GO:0048527: lateral root development	4.24E-02
104	GO:0007568: aging	4.24E-02
105	GO:0009910: negative regulation of flower development	4.24E-02
106	GO:0009853: photorespiration	4.52E-02
107	GO:0007049: cell cycle	4.60E-02
108	GO:0006839: mitochondrial transport	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
2	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
3	GO:0019808: polyamine binding	0.00E+00
4	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
5	GO:0008859: exoribonuclease II activity	0.00E+00
6	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	2.46E-04
7	GO:0017091: AU-rich element binding	2.46E-04
8	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	2.46E-04
9	GO:0005290: L-histidine transmembrane transporter activity	2.46E-04
10	GO:0008327: methyl-CpG binding	5.39E-04
11	GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity	5.44E-04
12	GO:0004047: aminomethyltransferase activity	5.44E-04
13	GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity	5.44E-04
14	GO:0000064: L-ornithine transmembrane transporter activity	5.44E-04
15	GO:0032549: ribonucleoside binding	8.83E-04
16	GO:0016805: dipeptidase activity	8.83E-04
17	GO:0010429: methyl-CpNpN binding	8.83E-04
18	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	8.83E-04
19	GO:0045548: phenylalanine ammonia-lyase activity	8.83E-04
20	GO:0010428: methyl-CpNpG binding	8.83E-04
21	GO:0042781: 3'-tRNA processing endoribonuclease activity	8.83E-04
22	GO:0004185: serine-type carboxypeptidase activity	1.12E-03
23	GO:0015189: L-lysine transmembrane transporter activity	1.26E-03
24	GO:0000254: C-4 methylsterol oxidase activity	1.26E-03
25	GO:0015181: arginine transmembrane transporter activity	1.26E-03
26	GO:0070628: proteasome binding	1.68E-03
27	GO:0009044: xylan 1,4-beta-xylosidase activity	1.68E-03
28	GO:0046556: alpha-L-arabinofuranosidase activity	1.68E-03
29	GO:0080032: methyl jasmonate esterase activity	1.68E-03
30	GO:0010385: double-stranded methylated DNA binding	1.68E-03
31	GO:0019901: protein kinase binding	2.44E-03
32	GO:0031593: polyubiquitin binding	2.65E-03
33	GO:0004144: diacylglycerol O-acyltransferase activity	3.18E-03
34	GO:0004559: alpha-mannosidase activity	3.18E-03
35	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.18E-03
36	GO:0019899: enzyme binding	3.75E-03
37	GO:0003872: 6-phosphofructokinase activity	3.75E-03
38	GO:0008142: oxysterol binding	4.98E-03
39	GO:0004519: endonuclease activity	5.19E-03
40	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	5.41E-03
41	GO:0003747: translation release factor activity	5.65E-03
42	GO:0009672: auxin:proton symporter activity	6.33E-03
43	GO:0015020: glucuronosyltransferase activity	7.06E-03
44	GO:0004713: protein tyrosine kinase activity	7.06E-03
45	GO:0042393: histone binding	7.08E-03
46	GO:0001054: RNA polymerase I activity	7.80E-03
47	GO:0010329: auxin efflux transmembrane transporter activity	9.38E-03
48	GO:0000175: 3'-5'-exoribonuclease activity	9.38E-03
49	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.02E-02
50	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.20E-02
51	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.20E-02
52	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.20E-02
53	GO:0043130: ubiquitin binding	1.29E-02
54	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.32E-02
55	GO:0005345: purine nucleobase transmembrane transporter activity	1.38E-02
56	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.41E-02
57	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.41E-02
58	GO:0004176: ATP-dependent peptidase activity	1.47E-02
59	GO:0004540: ribonuclease activity	1.47E-02
60	GO:0004871: signal transducer activity	1.57E-02
61	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.66E-02
62	GO:0016760: cellulose synthase (UDP-forming) activity	1.67E-02
63	GO:0030246: carbohydrate binding	1.71E-02
64	GO:0018024: histone-lysine N-methyltransferase activity	1.88E-02
65	GO:0004402: histone acetyltransferase activity	1.99E-02
66	GO:0001085: RNA polymerase II transcription factor binding	2.09E-02
67	GO:0003677: DNA binding	2.48E-02
68	GO:0000156: phosphorelay response regulator activity	2.67E-02
69	GO:0016759: cellulose synthase activity	2.79E-02
70	GO:0003684: damaged DNA binding	2.79E-02
71	GO:0008237: metallopeptidase activity	2.91E-02
72	GO:0008194: UDP-glycosyltransferase activity	2.99E-02
73	GO:0016413: O-acetyltransferase activity	3.04E-02
74	GO:0004721: phosphoprotein phosphatase activity	3.55E-02
75	GO:0004806: triglyceride lipase activity	3.55E-02
76	GO:0016301: kinase activity	3.95E-02
77	GO:0046982: protein heterodimerization activity	4.05E-02
78	GO:0016788: hydrolase activity, acting on ester bonds	4.21E-02
79	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.24E-02
80	GO:0003676: nucleic acid binding	4.37E-02
81	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.59E-02

Rank	GO Term	Adjusted P value
1	GO:0042597: periplasmic space	0.00E+00
2	GO:0009505: plant-type cell wall	9.87E-05
3	GO:0010370: perinucleolar chromocenter	2.46E-04
4	GO:0010330: cellulose synthase complex	8.83E-04
5	GO:0000178: exosome (RNase complex)	2.15E-03
6	GO:0005945: 6-phosphofructokinase complex	2.15E-03
7	GO:0010005: cortical microtubule, transverse to long axis	3.18E-03
8	GO:0031982: vesicle	4.35E-03
9	GO:0005811: lipid particle	4.98E-03
10	GO:0005720: nuclear heterochromatin	5.65E-03
11	GO:0005736: DNA-directed RNA polymerase I complex	5.65E-03
12	GO:0009507: chloroplast	6.64E-03
13	GO:0016602: CCAAT-binding factor complex	9.38E-03
14	GO:0045271: respiratory chain complex I	1.38E-02
15	GO:0000775: chromosome, centromeric region	1.57E-02
16	GO:0005770: late endosome	2.09E-02
17	GO:0043231: intracellular membrane-bounded organelle	2.18E-02
18	GO:0005802: trans-Golgi network	2.21E-02
19	GO:0005768: endosome	2.67E-02
20	GO:0000932: P-body	3.16E-02
21	GO:0005667: transcription factor complex	3.42E-02
22	GO:0009707: chloroplast outer membrane	3.82E-02
23	GO:0005819: spindle	4.81E-02