Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G26630

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042820: vitamin B6 catabolic process0.00E+00
2GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
3GO:1905177: tracheary element differentiation0.00E+00
4GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
5GO:0008298: intracellular mRNA localization0.00E+00
6GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
7GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
8GO:0070979: protein K11-linked ubiquitination0.00E+00
9GO:0043488: regulation of mRNA stability0.00E+00
10GO:0090071: negative regulation of ribosome biogenesis0.00E+00
11GO:1902326: positive regulation of chlorophyll biosynthetic process0.00E+00
12GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
13GO:0042821: pyridoxal biosynthetic process0.00E+00
14GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
15GO:0015882: L-ascorbic acid transport0.00E+00
16GO:0018023: peptidyl-lysine trimethylation0.00E+00
17GO:1900871: chloroplast mRNA modification3.29E-06
18GO:0010239: chloroplast mRNA processing2.67E-05
19GO:0045038: protein import into chloroplast thylakoid membrane7.68E-05
20GO:0046900: tetrahydrofolylpolyglutamate metabolic process2.68E-04
21GO:0043266: regulation of potassium ion transport2.68E-04
22GO:0006659: phosphatidylserine biosynthetic process2.68E-04
23GO:2000021: regulation of ion homeostasis2.68E-04
24GO:0070574: cadmium ion transmembrane transport2.68E-04
25GO:0051247: positive regulation of protein metabolic process2.68E-04
26GO:1902458: positive regulation of stomatal opening2.68E-04
27GO:0010028: xanthophyll cycle2.68E-04
28GO:2000905: negative regulation of starch metabolic process2.68E-04
29GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process2.68E-04
30GO:0000476: maturation of 4.5S rRNA2.68E-04
31GO:0009443: pyridoxal 5'-phosphate salvage2.68E-04
32GO:0000967: rRNA 5'-end processing2.68E-04
33GO:0051775: response to redox state2.68E-04
34GO:0031426: polycistronic mRNA processing2.68E-04
35GO:1900865: chloroplast RNA modification4.50E-04
36GO:0018026: peptidyl-lysine monomethylation5.89E-04
37GO:1904143: positive regulation of carotenoid biosynthetic process5.89E-04
38GO:1903426: regulation of reactive oxygen species biosynthetic process5.89E-04
39GO:0010024: phytochromobilin biosynthetic process5.89E-04
40GO:0034470: ncRNA processing5.89E-04
41GO:0019684: photosynthesis, light reaction6.07E-04
42GO:0009767: photosynthetic electron transport chain7.86E-04
43GO:0031145: anaphase-promoting complex-dependent catabolic process9.55E-04
44GO:0010623: programmed cell death involved in cell development9.55E-04
45GO:0006760: folic acid-containing compound metabolic process9.55E-04
46GO:0005977: glycogen metabolic process9.55E-04
47GO:0006788: heme oxidation9.55E-04
48GO:0048586: regulation of long-day photoperiodism, flowering9.55E-04
49GO:0006954: inflammatory response9.55E-04
50GO:0046739: transport of virus in multicellular host1.36E-03
51GO:2001141: regulation of RNA biosynthetic process1.36E-03
52GO:0090308: regulation of methylation-dependent chromatin silencing1.36E-03
53GO:0046836: glycolipid transport1.36E-03
54GO:0030071: regulation of mitotic metaphase/anaphase transition1.36E-03
55GO:0006107: oxaloacetate metabolic process1.36E-03
56GO:0051016: barbed-end actin filament capping1.36E-03
57GO:0016556: mRNA modification1.36E-03
58GO:0006021: inositol biosynthetic process1.83E-03
59GO:0006734: NADH metabolic process1.83E-03
60GO:0010021: amylopectin biosynthetic process1.83E-03
61GO:0048442: sepal development1.83E-03
62GO:0009765: photosynthesis, light harvesting1.83E-03
63GO:2000306: positive regulation of photomorphogenesis1.83E-03
64GO:0010508: positive regulation of autophagy1.83E-03
65GO:0046656: folic acid biosynthetic process1.83E-03
66GO:0009658: chloroplast organization2.19E-03
67GO:0080022: primary root development2.21E-03
68GO:0010087: phloem or xylem histogenesis2.21E-03
69GO:0032876: negative regulation of DNA endoreduplication2.33E-03
70GO:0080110: sporopollenin biosynthetic process2.33E-03
71GO:0019252: starch biosynthetic process2.75E-03
72GO:0009791: post-embryonic development2.75E-03
73GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.88E-03
74GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.88E-03
75GO:0016554: cytidine to uridine editing2.88E-03
76GO:0006655: phosphatidylglycerol biosynthetic process2.88E-03
77GO:0032973: amino acid export2.88E-03
78GO:0000741: karyogamy2.88E-03
79GO:0010190: cytochrome b6f complex assembly2.88E-03
80GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione2.88E-03
81GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.88E-03
82GO:0032502: developmental process3.14E-03
83GO:0017148: negative regulation of translation3.46E-03
84GO:0048280: vesicle fusion with Golgi apparatus3.46E-03
85GO:0046654: tetrahydrofolate biosynthetic process3.46E-03
86GO:0080086: stamen filament development3.46E-03
87GO:1901259: chloroplast rRNA processing3.46E-03
88GO:0010076: maintenance of floral meristem identity3.46E-03
89GO:0015979: photosynthesis3.72E-03
90GO:0043090: amino acid import4.08E-03
91GO:0051693: actin filament capping4.08E-03
92GO:0009690: cytokinin metabolic process4.73E-03
93GO:0010078: maintenance of root meristem identity4.73E-03
94GO:0032875: regulation of DNA endoreduplication4.73E-03
95GO:2000070: regulation of response to water deprivation4.73E-03
96GO:0046620: regulation of organ growth4.73E-03
97GO:0006875: cellular metal ion homeostasis4.73E-03
98GO:0032544: plastid translation5.42E-03
99GO:0043562: cellular response to nitrogen levels5.42E-03
100GO:0017004: cytochrome complex assembly5.42E-03
101GO:0071482: cellular response to light stimulus5.42E-03
102GO:0015996: chlorophyll catabolic process5.42E-03
103GO:0007186: G-protein coupled receptor signaling pathway5.42E-03
104GO:0010497: plasmodesmata-mediated intercellular transport5.42E-03
105GO:0018298: protein-chromophore linkage5.54E-03
106GO:0098656: anion transmembrane transport6.14E-03
107GO:0046685: response to arsenic-containing substance6.14E-03
108GO:0048507: meristem development6.14E-03
109GO:0080144: amino acid homeostasis6.14E-03
110GO:0009451: RNA modification6.16E-03
111GO:0006896: Golgi to vacuole transport7.68E-03
112GO:0048441: petal development7.68E-03
113GO:0005975: carbohydrate metabolic process8.41E-03
114GO:0006352: DNA-templated transcription, initiation8.50E-03
115GO:0010216: maintenance of DNA methylation8.50E-03
116GO:0009684: indoleacetic acid biosynthetic process8.50E-03
117GO:0009773: photosynthetic electron transport in photosystem I8.50E-03
118GO:0009089: lysine biosynthetic process via diaminopimelate8.50E-03
119GO:0006415: translational termination8.50E-03
120GO:0016024: CDP-diacylglycerol biosynthetic process9.35E-03
121GO:0045037: protein import into chloroplast stroma9.35E-03
122GO:0010628: positive regulation of gene expression1.02E-02
123GO:0006108: malate metabolic process1.02E-02
124GO:0030036: actin cytoskeleton organization1.02E-02
125GO:0009718: anthocyanin-containing compound biosynthetic process1.02E-02
126GO:0010588: cotyledon vascular tissue pattern formation1.02E-02
127GO:0007015: actin filament organization1.11E-02
128GO:0048467: gynoecium development1.11E-02
129GO:0048440: carpel development1.11E-02
130GO:0006541: glutamine metabolic process1.11E-02
131GO:0010207: photosystem II assembly1.11E-02
132GO:0010030: positive regulation of seed germination1.21E-02
133GO:0019853: L-ascorbic acid biosynthetic process1.21E-02
134GO:0008299: isoprenoid biosynthetic process1.50E-02
135GO:0006730: one-carbon metabolic process1.71E-02
136GO:0006012: galactose metabolic process1.82E-02
137GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.82E-02
138GO:0055085: transmembrane transport1.88E-02
139GO:0010089: xylem development1.94E-02
140GO:0010584: pollen exine formation1.94E-02
141GO:0048443: stamen development1.94E-02
142GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.05E-02
143GO:0042147: retrograde transport, endosome to Golgi2.05E-02
144GO:0042631: cellular response to water deprivation2.17E-02
145GO:0006662: glycerol ether metabolic process2.29E-02
146GO:0010197: polar nucleus fusion2.29E-02
147GO:0010182: sugar mediated signaling pathway2.29E-02
148GO:0009741: response to brassinosteroid2.29E-02
149GO:0009958: positive gravitropism2.29E-02
150GO:0009646: response to absence of light2.41E-02
151GO:0008654: phospholipid biosynthetic process2.53E-02
152GO:0055072: iron ion homeostasis2.53E-02
153GO:0009851: auxin biosynthetic process2.53E-02
154GO:0006623: protein targeting to vacuole2.53E-02
155GO:0048825: cotyledon development2.53E-02
156GO:0006891: intra-Golgi vesicle-mediated transport2.65E-02
157GO:0010583: response to cyclopentenone2.78E-02
158GO:0006464: cellular protein modification process3.04E-02
159GO:0009828: plant-type cell wall loosening3.04E-02
160GO:0010027: thylakoid membrane organization3.45E-02
161GO:0010029: regulation of seed germination3.59E-02
162GO:0008380: RNA splicing3.60E-02
163GO:0010468: regulation of gene expression3.60E-02
164GO:0015995: chlorophyll biosynthetic process3.88E-02
165GO:0006888: ER to Golgi vesicle-mediated transport3.88E-02
166GO:0009416: response to light stimulus4.57E-02
167GO:0048527: lateral root development4.62E-02
168GO:0016051: carbohydrate biosynthetic process4.93E-02
169GO:0009793: embryo development ending in seed dormancy4.93E-02
RankGO TermAdjusted P value
1GO:0015229: L-ascorbic acid transporter activity0.00E+00
2GO:0010349: L-galactose dehydrogenase activity0.00E+00
3GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
4GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
5GO:0019144: ADP-sugar diphosphatase activity0.00E+00
6GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
7GO:0070402: NADPH binding1.18E-05
8GO:0043495: protein anchor4.83E-05
9GO:0004462: lactoylglutathione lyase activity1.12E-04
10GO:0019899: enzyme binding2.02E-04
11GO:0004033: aldo-keto reductase (NADP) activity2.55E-04
12GO:0008242: omega peptidase activity2.68E-04
13GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity2.68E-04
14GO:0008746: NAD(P)+ transhydrogenase activity2.68E-04
15GO:0016776: phosphotransferase activity, phosphate group as acceptor2.68E-04
16GO:0080042: ADP-glucose pyrophosphohydrolase activity2.68E-04
17GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase5.89E-04
18GO:0034722: gamma-glutamyl-peptidase activity5.89E-04
19GO:0017118: lipoyltransferase activity5.89E-04
20GO:0080041: ADP-ribose pyrophosphohydrolase activity5.89E-04
21GO:0004326: tetrahydrofolylpolyglutamate synthase activity5.89E-04
22GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity5.89E-04
23GO:0102083: 7,8-dihydromonapterin aldolase activity5.89E-04
24GO:0004512: inositol-3-phosphate synthase activity5.89E-04
25GO:0080097: L-tryptophan:pyruvate aminotransferase activity5.89E-04
26GO:0019156: isoamylase activity5.89E-04
27GO:0004150: dihydroneopterin aldolase activity5.89E-04
28GO:0003913: DNA photolyase activity9.55E-04
29GO:0004148: dihydrolipoyl dehydrogenase activity9.55E-04
30GO:0043023: ribosomal large subunit binding1.36E-03
31GO:0017089: glycolipid transporter activity1.36E-03
32GO:0048027: mRNA 5'-UTR binding1.36E-03
33GO:0015086: cadmium ion transmembrane transporter activity1.36E-03
34GO:0004519: endonuclease activity1.49E-03
35GO:0022891: substrate-specific transmembrane transporter activity1.74E-03
36GO:0004392: heme oxygenase (decyclizing) activity1.83E-03
37GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity1.83E-03
38GO:0016279: protein-lysine N-methyltransferase activity1.83E-03
39GO:0001053: plastid sigma factor activity1.83E-03
40GO:0051861: glycolipid binding1.83E-03
41GO:0004045: aminoacyl-tRNA hydrolase activity1.83E-03
42GO:0080032: methyl jasmonate esterase activity1.83E-03
43GO:0016987: sigma factor activity1.83E-03
44GO:0009011: starch synthase activity1.83E-03
45GO:0008514: organic anion transmembrane transporter activity1.89E-03
46GO:0016846: carbon-sulfur lyase activity2.33E-03
47GO:0016615: malate dehydrogenase activity2.88E-03
48GO:0008200: ion channel inhibitor activity2.88E-03
49GO:0080030: methyl indole-3-acetate esterase activity2.88E-03
50GO:0004556: alpha-amylase activity2.88E-03
51GO:0003723: RNA binding3.21E-03
52GO:0003730: mRNA 3'-UTR binding3.46E-03
53GO:0008195: phosphatidate phosphatase activity3.46E-03
54GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.46E-03
55GO:0030060: L-malate dehydrogenase activity3.46E-03
56GO:0015103: inorganic anion transmembrane transporter activity4.08E-03
57GO:0016168: chlorophyll binding4.49E-03
58GO:0003747: translation release factor activity6.14E-03
59GO:0015020: glucuronosyltransferase activity7.68E-03
60GO:0042802: identical protein binding8.11E-03
61GO:0008559: xenobiotic-transporting ATPase activity8.50E-03
62GO:0035091: phosphatidylinositol binding9.81E-03
63GO:0005315: inorganic phosphate transmembrane transporter activity1.02E-02
64GO:0009982: pseudouridine synthase activity1.02E-02
65GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.11E-02
66GO:0005528: FK506 binding1.40E-02
67GO:0003824: catalytic activity1.42E-02
68GO:0047134: protein-disulfide reductase activity2.05E-02
69GO:0005199: structural constituent of cell wall2.29E-02
70GO:0046873: metal ion transmembrane transporter activity2.29E-02
71GO:0008080: N-acetyltransferase activity2.29E-02
72GO:0004791: thioredoxin-disulfide reductase activity2.41E-02
73GO:0016853: isomerase activity2.41E-02
74GO:0050662: coenzyme binding2.41E-02
75GO:0048038: quinone binding2.65E-02
76GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.91E-02
77GO:0008375: acetylglucosaminyltransferase activity3.73E-02
78GO:0004721: phosphoprotein phosphatase activity3.88E-02
79GO:0015238: drug transmembrane transporter activity4.32E-02
80GO:0004222: metalloendopeptidase activity4.47E-02
81GO:0030145: manganese ion binding4.62E-02
82GO:0016788: hydrolase activity, acting on ester bonds4.74E-02
RankGO TermAdjusted P value
1GO:0010368: chloroplast isoamylase complex0.00E+00
2GO:0009507: chloroplast3.23E-21
3GO:0009570: chloroplast stroma4.23E-08
4GO:0009535: chloroplast thylakoid membrane5.91E-05
5GO:0042651: thylakoid membrane9.96E-05
6GO:0009344: nitrite reductase complex [NAD(P)H]2.68E-04
7GO:0080085: signal recognition particle, chloroplast targeting5.89E-04
8GO:0008290: F-actin capping protein complex5.89E-04
9GO:0009508: plastid chromosome7.86E-04
10GO:0009528: plastid inner membrane9.55E-04
11GO:0009654: photosystem II oxygen evolving complex1.33E-03
12GO:0009527: plastid outer membrane1.83E-03
13GO:0009523: photosystem II2.75E-03
14GO:0019898: extrinsic component of membrane2.75E-03
15GO:0009295: nucleoid3.78E-03
16GO:0009543: chloroplast thylakoid lumen3.97E-03
17GO:0012507: ER to Golgi transport vesicle membrane4.73E-03
18GO:0009501: amyloplast4.73E-03
19GO:0005786: signal recognition particle, endoplasmic reticulum targeting5.42E-03
20GO:0009536: plastid5.55E-03
21GO:0005720: nuclear heterochromatin6.14E-03
22GO:0005680: anaphase-promoting complex6.14E-03
23GO:0042644: chloroplast nucleoid6.14E-03
24GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.14E-03
25GO:0043231: intracellular membrane-bounded organelle6.38E-03
26GO:0016604: nuclear body6.90E-03
27GO:0030095: chloroplast photosystem II1.11E-02
28GO:0009941: chloroplast envelope1.25E-02
29GO:0009532: plastid stroma1.61E-02
30GO:0009534: chloroplast thylakoid1.74E-02
31GO:0009706: chloroplast inner membrane1.75E-02
32GO:0009705: plant-type vacuole membrane3.02E-02
33GO:0010319: stromule3.18E-02
34GO:0030529: intracellular ribonucleoprotein complex3.45E-02
35GO:0009707: chloroplast outer membrane4.17E-02
36GO:0000325: plant-type vacuole4.62E-02
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Gene type



Gene DE type