co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G25890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000378: negative regulation of reactive oxygen species metabolic process	0.00E+00
2	GO:0010401: pectic galactan metabolic process	0.00E+00
3	GO:0009312: oligosaccharide biosynthetic process	0.00E+00
4	GO:0046865: terpenoid transport	0.00E+00
5	GO:0006983: ER overload response	0.00E+00
6	GO:1902009: positive regulation of toxin transport	0.00E+00
7	GO:0051553: flavone biosynthetic process	0.00E+00
8	GO:0006654: phosphatidic acid biosynthetic process	0.00E+00
9	GO:0090480: purine nucleotide-sugar transmembrane transport	0.00E+00
10	GO:1902289: negative regulation of defense response to oomycetes	0.00E+00
11	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
12	GO:0005993: trehalose catabolic process	0.00E+00
13	GO:0030150: protein import into mitochondrial matrix	4.14E-06
14	GO:0015012: heparan sulfate proteoglycan biosynthetic process	4.22E-06
15	GO:0006024: glycosaminoglycan biosynthetic process	4.22E-06
16	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	8.17E-06
17	GO:0009863: salicylic acid mediated signaling pathway	1.13E-04
18	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	3.04E-04
19	GO:0043182: vacuolar sequestering of sodium ion	3.04E-04
20	GO:0046246: terpene biosynthetic process	3.04E-04
21	GO:0032469: endoplasmic reticulum calcium ion homeostasis	3.04E-04
22	GO:0034975: protein folding in endoplasmic reticulum	3.04E-04
23	GO:0016337: single organismal cell-cell adhesion	3.04E-04
24	GO:0000077: DNA damage checkpoint	3.04E-04
25	GO:1990641: response to iron ion starvation	3.04E-04
26	GO:0000303: response to superoxide	3.04E-04
27	GO:0008202: steroid metabolic process	5.40E-04
28	GO:0042853: L-alanine catabolic process	6.66E-04
29	GO:0040020: regulation of meiotic nuclear division	6.66E-04
30	GO:0006101: citrate metabolic process	6.66E-04
31	GO:0043066: negative regulation of apoptotic process	6.66E-04
32	GO:0052542: defense response by callose deposition	6.66E-04
33	GO:0008535: respiratory chain complex IV assembly	6.66E-04
34	GO:0080183: response to photooxidative stress	6.66E-04
35	GO:0010155: regulation of proton transport	6.66E-04
36	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	6.66E-04
37	GO:0052541: plant-type cell wall cellulose metabolic process	6.66E-04
38	GO:0000266: mitochondrial fission	8.31E-04
39	GO:0015031: protein transport	9.02E-04
40	GO:0080168: abscisic acid transport	1.08E-03
41	GO:0080163: regulation of protein serine/threonine phosphatase activity	1.08E-03
42	GO:0006065: UDP-glucuronate biosynthetic process	1.08E-03
43	GO:0015783: GDP-fucose transport	1.08E-03
44	GO:0009410: response to xenobiotic stimulus	1.08E-03
45	GO:0015692: lead ion transport	1.08E-03
46	GO:0052546: cell wall pectin metabolic process	1.08E-03
47	GO:0009738: abscisic acid-activated signaling pathway	1.25E-03
48	GO:0072334: UDP-galactose transmembrane transport	1.55E-03
49	GO:0006809: nitric oxide biosynthetic process	1.55E-03
50	GO:0010731: protein glutathionylation	1.55E-03
51	GO:0071323: cellular response to chitin	1.55E-03
52	GO:0055070: copper ion homeostasis	1.55E-03
53	GO:0055089: fatty acid homeostasis	1.55E-03
54	GO:0033617: mitochondrial respiratory chain complex IV assembly	1.55E-03
55	GO:0051639: actin filament network formation	1.55E-03
56	GO:0002239: response to oomycetes	1.55E-03
57	GO:0006621: protein retention in ER lumen	2.07E-03
58	GO:1901002: positive regulation of response to salt stress	2.07E-03
59	GO:0000003: reproduction	2.07E-03
60	GO:0051764: actin crosslink formation	2.07E-03
61	GO:0045088: regulation of innate immune response	2.07E-03
62	GO:0009306: protein secretion	2.28E-03
63	GO:0006097: glyoxylate cycle	2.65E-03
64	GO:0009229: thiamine diphosphate biosynthetic process	2.65E-03
65	GO:0006665: sphingolipid metabolic process	2.65E-03
66	GO:0045040: protein import into mitochondrial outer membrane	3.27E-03
67	GO:0047484: regulation of response to osmotic stress	3.27E-03
68	GO:1900425: negative regulation of defense response to bacterium	3.27E-03
69	GO:0009228: thiamine biosynthetic process	3.27E-03
70	GO:0033365: protein localization to organelle	3.27E-03
71	GO:0006623: protein targeting to vacuole	3.31E-03
72	GO:0002229: defense response to oomycetes	3.55E-03
73	GO:0010193: response to ozone	3.55E-03
74	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	3.93E-03
75	GO:0006464: cellular protein modification process	4.30E-03
76	GO:2000014: regulation of endosperm development	4.64E-03
77	GO:0006333: chromatin assembly or disassembly	4.64E-03
78	GO:0010044: response to aluminum ion	4.64E-03
79	GO:0046470: phosphatidylcholine metabolic process	4.64E-03
80	GO:1900150: regulation of defense response to fungus	5.39E-03
81	GO:0009850: auxin metabolic process	5.39E-03
82	GO:0006605: protein targeting	5.39E-03
83	GO:0031540: regulation of anthocyanin biosynthetic process	5.39E-03
84	GO:0006102: isocitrate metabolic process	5.39E-03
85	GO:0016559: peroxisome fission	5.39E-03
86	GO:0009816: defense response to bacterium, incompatible interaction	5.42E-03
87	GO:0030968: endoplasmic reticulum unfolded protein response	6.18E-03
88	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	6.18E-03
89	GO:0010332: response to gamma radiation	7.01E-03
90	GO:0010112: regulation of systemic acquired resistance	7.01E-03
91	GO:0015780: nucleotide-sugar transport	7.01E-03
92	GO:0007338: single fertilization	7.01E-03
93	GO:0010150: leaf senescence	7.61E-03
94	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	7.87E-03
95	GO:0045087: innate immune response	8.49E-03
96	GO:0051555: flavonol biosynthetic process	8.77E-03
97	GO:0009870: defense response signaling pathway, resistance gene-dependent	8.77E-03
98	GO:0043069: negative regulation of programmed cell death	8.77E-03
99	GO:0006470: protein dephosphorylation	9.03E-03
100	GO:0052544: defense response by callose deposition in cell wall	9.71E-03
101	GO:0019684: photosynthesis, light reaction	9.71E-03
102	GO:0009089: lysine biosynthetic process via diaminopimelate	9.71E-03
103	GO:0000038: very long-chain fatty acid metabolic process	9.71E-03
104	GO:0006631: fatty acid metabolic process	1.01E-02
105	GO:0045037: protein import into chloroplast stroma	1.07E-02
106	GO:0012501: programmed cell death	1.07E-02
107	GO:0051707: response to other organism	1.10E-02
108	GO:2000012: regulation of auxin polar transport	1.17E-02
109	GO:0010102: lateral root morphogenesis	1.17E-02
110	GO:0006626: protein targeting to mitochondrion	1.17E-02
111	GO:0030036: actin cytoskeleton organization	1.17E-02
112	GO:0018107: peptidyl-threonine phosphorylation	1.17E-02
113	GO:0002237: response to molecule of bacterial origin	1.27E-02
114	GO:0007034: vacuolar transport	1.27E-02
115	GO:0006855: drug transmembrane transport	1.28E-02
116	GO:0007030: Golgi organization	1.38E-02
117	GO:0070588: calcium ion transmembrane transport	1.38E-02
118	GO:0009846: pollen germination	1.38E-02
119	GO:0042538: hyperosmotic salinity response	1.38E-02
120	GO:0006486: protein glycosylation	1.48E-02
121	GO:0034976: response to endoplasmic reticulum stress	1.49E-02
122	GO:0006636: unsaturated fatty acid biosynthetic process	1.49E-02
123	GO:0000162: tryptophan biosynthetic process	1.49E-02
124	GO:0010224: response to UV-B	1.53E-02
125	GO:0000027: ribosomal large subunit assembly	1.60E-02
126	GO:0080147: root hair cell development	1.60E-02
127	GO:0009723: response to ethylene	1.60E-02
128	GO:0051017: actin filament bundle assembly	1.60E-02
129	GO:0006289: nucleotide-excision repair	1.60E-02
130	GO:2000377: regulation of reactive oxygen species metabolic process	1.60E-02
131	GO:0042742: defense response to bacterium	1.68E-02
132	GO:0048278: vesicle docking	1.84E-02
133	GO:0016114: terpenoid biosynthetic process	1.84E-02
134	GO:0006334: nucleosome assembly	1.84E-02
135	GO:0016192: vesicle-mediated transport	1.86E-02
136	GO:0009620: response to fungus	1.93E-02
137	GO:0044550: secondary metabolite biosynthetic process	1.94E-02
138	GO:0009814: defense response, incompatible interaction	1.96E-02
139	GO:0031348: negative regulation of defense response	1.96E-02
140	GO:0071456: cellular response to hypoxia	1.96E-02
141	GO:0007275: multicellular organism development	2.00E-02
142	GO:0009411: response to UV	2.09E-02
143	GO:0018105: peptidyl-serine phosphorylation	2.18E-02
144	GO:0006886: intracellular protein transport	2.28E-02
145	GO:0010087: phloem or xylem histogenesis	2.48E-02
146	GO:0009960: endosperm development	2.62E-02
147	GO:0008360: regulation of cell shape	2.62E-02
148	GO:0010197: polar nucleus fusion	2.62E-02
149	GO:0061025: membrane fusion	2.76E-02
150	GO:0009751: response to salicylic acid	2.80E-02
151	GO:0009408: response to heat	2.85E-02
152	GO:0071554: cell wall organization or biogenesis	3.04E-02
153	GO:0009790: embryo development	3.09E-02
154	GO:0016032: viral process	3.19E-02
155	GO:0032502: developmental process	3.19E-02
156	GO:0006633: fatty acid biosynthetic process	3.32E-02
157	GO:0030163: protein catabolic process	3.33E-02
158	GO:0009567: double fertilization forming a zygote and endosperm	3.49E-02
159	GO:0001666: response to hypoxia	3.95E-02
160	GO:0010029: regulation of seed germination	4.11E-02
161	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.11E-02
162	GO:0007166: cell surface receptor signaling pathway	4.17E-02
163	GO:0006906: vesicle fusion	4.27E-02
164	GO:0008380: RNA splicing	4.35E-02
165	GO:0008219: cell death	4.77E-02
166	GO:0048767: root hair elongation	4.94E-02
167	GO:0009813: flavonoid biosynthetic process	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	0.00E+00
2	GO:0004555: alpha,alpha-trehalase activity	0.00E+00
3	GO:0050334: thiaminase activity	0.00E+00
4	GO:0005046: KDEL sequence binding	0.00E+00
5	GO:0097008: (3E)-4,8-dimethyl-1,3,7-nonatriene synthase activity	0.00E+00
6	GO:0034338: short-chain carboxylesterase activity	0.00E+00
7	GO:0033759: flavone synthase activity	0.00E+00
8	GO:0097007: 4,8,12-trimethyltrideca-1,3,7,11-tetraene synthase activity	0.00E+00
9	GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	0.00E+00
10	GO:0004656: procollagen-proline 4-dioxygenase activity	3.37E-06
11	GO:0031418: L-ascorbic acid binding	1.13E-04
12	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.51E-04
13	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	3.04E-04
14	GO:0010285: L,L-diaminopimelate aminotransferase activity	3.04E-04
15	GO:0016920: pyroglutamyl-peptidase activity	3.04E-04
16	GO:0015927: trehalase activity	3.04E-04
17	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	3.80E-04
18	GO:0008142: oxysterol binding	3.80E-04
19	GO:0004630: phospholipase D activity	3.80E-04
20	GO:0000774: adenyl-nucleotide exchange factor activity	6.66E-04
21	GO:0032934: sterol binding	6.66E-04
22	GO:0015036: disulfide oxidoreductase activity	6.66E-04
23	GO:0003994: aconitate hydratase activity	6.66E-04
24	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	8.97E-04
25	GO:0015266: protein channel activity	9.40E-04
26	GO:0005457: GDP-fucose transmembrane transporter activity	1.08E-03
27	GO:0003979: UDP-glucose 6-dehydrogenase activity	1.08E-03
28	GO:0005509: calcium ion binding	1.40E-03
29	GO:0035529: NADH pyrophosphatase activity	1.55E-03
30	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	1.55E-03
31	GO:0030527: structural constituent of chromatin	1.55E-03
32	GO:0005460: UDP-glucose transmembrane transporter activity	1.55E-03
33	GO:0010178: IAA-amino acid conjugate hydrolase activity	1.55E-03
34	GO:0035251: UDP-glucosyltransferase activity	1.76E-03
35	GO:0004834: tryptophan synthase activity	2.07E-03
36	GO:0046923: ER retention sequence binding	2.07E-03
37	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	2.65E-03
38	GO:0004623: phospholipase A2 activity	2.65E-03
39	GO:0047631: ADP-ribose diphosphatase activity	2.65E-03
40	GO:0005459: UDP-galactose transmembrane transporter activity	2.65E-03
41	GO:0000210: NAD+ diphosphatase activity	3.27E-03
42	GO:0102391: decanoate--CoA ligase activity	3.93E-03
43	GO:0003950: NAD+ ADP-ribosyltransferase activity	3.93E-03
44	GO:0004467: long-chain fatty acid-CoA ligase activity	4.64E-03
45	GO:0005506: iron ion binding	5.24E-03
46	GO:0047893: flavonol 3-O-glucosyltransferase activity	5.39E-03
47	GO:0052747: sinapyl alcohol dehydrogenase activity	5.39E-03
48	GO:0030170: pyridoxal phosphate binding	5.77E-03
49	GO:0046872: metal ion binding	5.78E-03
50	GO:0004722: protein serine/threonine phosphatase activity	6.14E-03
51	GO:0003843: 1,3-beta-D-glucan synthase activity	6.18E-03
52	GO:0030955: potassium ion binding	7.87E-03
53	GO:0004743: pyruvate kinase activity	7.87E-03
54	GO:0004864: protein phosphatase inhibitor activity	8.77E-03
55	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.07E-02
56	GO:0015198: oligopeptide transporter activity	1.07E-02
57	GO:0005388: calcium-transporting ATPase activity	1.17E-02
58	GO:0031072: heat shock protein binding	1.17E-02
59	GO:0005262: calcium channel activity	1.17E-02
60	GO:0051287: NAD binding	1.33E-02
61	GO:0008061: chitin binding	1.38E-02
62	GO:0003712: transcription cofactor activity	1.38E-02
63	GO:0003682: chromatin binding	1.43E-02
64	GO:0051087: chaperone binding	1.72E-02
65	GO:0004497: monooxygenase activity	1.75E-02
66	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.93E-02
67	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.93E-02
68	GO:0016874: ligase activity	1.99E-02
69	GO:0022857: transmembrane transporter activity	1.99E-02
70	GO:0051082: unfolded protein binding	2.11E-02
71	GO:0015035: protein disulfide oxidoreductase activity	2.18E-02
72	GO:0003756: protein disulfide isomerase activity	2.22E-02
73	GO:0004499: N,N-dimethylaniline monooxygenase activity	2.22E-02
74	GO:0042803: protein homodimerization activity	2.32E-02
75	GO:0005102: receptor binding	2.35E-02
76	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.72E-02
77	GO:0004872: receptor activity	2.90E-02
78	GO:0005507: copper ion binding	2.95E-02
79	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.33E-02
80	GO:0051015: actin filament binding	3.33E-02
81	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.40E-02
82	GO:0015297: antiporter activity	3.49E-02
83	GO:0008483: transaminase activity	3.64E-02
84	GO:0008237: metallopeptidase activity	3.64E-02
85	GO:0016413: O-acetyltransferase activity	3.79E-02
86	GO:0008194: UDP-glycosyltransferase activity	4.08E-02
87	GO:0008375: acetylglucosaminyltransferase activity	4.27E-02
88	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.27E-02
89	GO:0004806: triglyceride lipase activity	4.44E-02
90	GO:0030247: polysaccharide binding	4.44E-02
91	GO:0004683: calmodulin-dependent protein kinase activity	4.44E-02
92	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.62E-02
93	GO:0005515: protein binding	4.70E-02
94	GO:0015238: drug transmembrane transporter activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0016021: integral component of membrane	1.88E-06
2	GO:0005789: endoplasmic reticulum membrane	2.76E-05
3	GO:0005794: Golgi apparatus	4.64E-05
4	GO:0005783: endoplasmic reticulum	2.68E-04
5	GO:0001405: presequence translocase-associated import motor	3.04E-04
6	GO:0030665: clathrin-coated vesicle membrane	5.40E-04
7	GO:0017119: Golgi transport complex	6.31E-04
8	GO:0031314: extrinsic component of mitochondrial inner membrane	6.66E-04
9	GO:0000139: Golgi membrane	1.05E-03
10	GO:0030176: integral component of endoplasmic reticulum membrane	1.18E-03
11	GO:0031902: late endosome membrane	1.49E-03
12	GO:0032432: actin filament bundle	1.55E-03
13	GO:0030658: transport vesicle membrane	1.55E-03
14	GO:0005743: mitochondrial inner membrane	1.58E-03
15	GO:0005741: mitochondrial outer membrane	1.76E-03
16	GO:0009898: cytoplasmic side of plasma membrane	2.07E-03
17	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.28E-03
18	GO:0000164: protein phosphatase type 1 complex	2.65E-03
19	GO:0016363: nuclear matrix	3.93E-03
20	GO:0005801: cis-Golgi network	3.93E-03
21	GO:0030173: integral component of Golgi membrane	3.93E-03
22	GO:0009543: chloroplast thylakoid lumen	5.05E-03
23	GO:0031305: integral component of mitochondrial inner membrane	5.39E-03
24	GO:0005742: mitochondrial outer membrane translocase complex	6.18E-03
25	GO:0000148: 1,3-beta-D-glucan synthase complex	6.18E-03
26	GO:0043231: intracellular membrane-bounded organelle	8.51E-03
27	GO:0005774: vacuolar membrane	9.65E-03
28	GO:0005884: actin filament	9.71E-03
29	GO:0031307: integral component of mitochondrial outer membrane	1.07E-02
30	GO:0005802: trans-Golgi network	1.12E-02
31	GO:0005795: Golgi stack	1.38E-02
32	GO:0005768: endosome	1.40E-02
33	GO:0022625: cytosolic large ribosomal subunit	1.86E-02
34	GO:0031410: cytoplasmic vesicle	1.96E-02
35	GO:0005623: cell	2.72E-02
36	GO:0016592: mediator complex	3.19E-02
37	GO:0000785: chromatin	3.19E-02
38	GO:0005778: peroxisomal membrane	3.64E-02
39	GO:0016020: membrane	4.03E-02
40	GO:0005788: endoplasmic reticulum lumen	4.11E-02
41	GO:0005887: integral component of plasma membrane	4.15E-02
42	GO:0000151: ubiquitin ligase complex	4.77E-02
43	GO:0005886: plasma membrane	4.91E-02