co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G25870

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090480: purine nucleotide-sugar transmembrane transport	0.00E+00
2	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
3	GO:0005993: trehalose catabolic process	0.00E+00
4	GO:0046865: terpenoid transport	0.00E+00
5	GO:0009312: oligosaccharide biosynthetic process	0.00E+00
6	GO:0006983: ER overload response	0.00E+00
7	GO:0009863: salicylic acid mediated signaling pathway	6.15E-05
8	GO:0031930: mitochondria-nucleus signaling pathway	1.21E-04
9	GO:0009306: protein secretion	1.23E-04
10	GO:0042539: hypotonic salinity response	2.29E-04
11	GO:0034975: protein folding in endoplasmic reticulum	2.29E-04
12	GO:0009868: jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway	2.29E-04
13	GO:1990641: response to iron ion starvation	2.29E-04
14	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	2.29E-04
15	GO:0006562: proline catabolic process	2.29E-04
16	GO:0032469: endoplasmic reticulum calcium ion homeostasis	2.29E-04
17	GO:1902065: response to L-glutamate	2.29E-04
18	GO:0032491: detection of molecule of fungal origin	2.29E-04
19	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	3.62E-04
20	GO:0080183: response to photooxidative stress	5.10E-04
21	GO:0010155: regulation of proton transport	5.10E-04
22	GO:0010133: proline catabolic process to glutamate	5.10E-04
23	GO:0006024: glycosaminoglycan biosynthetic process	5.10E-04
24	GO:0002240: response to molecule of oomycetes origin	5.10E-04
25	GO:0006101: citrate metabolic process	5.10E-04
26	GO:0043066: negative regulation of apoptotic process	5.10E-04
27	GO:0008535: respiratory chain complex IV assembly	5.10E-04
28	GO:0015012: heparan sulfate proteoglycan biosynthetic process	5.10E-04
29	GO:0045087: innate immune response	7.25E-04
30	GO:0006065: UDP-glucuronate biosynthetic process	8.29E-04
31	GO:0015783: GDP-fucose transport	8.29E-04
32	GO:0042256: mature ribosome assembly	8.29E-04
33	GO:0009410: response to xenobiotic stimulus	8.29E-04
34	GO:0015692: lead ion transport	8.29E-04
35	GO:0052546: cell wall pectin metabolic process	8.29E-04
36	GO:0080168: abscisic acid transport	8.29E-04
37	GO:1902626: assembly of large subunit precursor of preribosome	8.29E-04
38	GO:0006470: protein dephosphorylation	9.90E-04
39	GO:0055070: copper ion homeostasis	1.18E-03
40	GO:0033617: mitochondrial respiratory chain complex IV assembly	1.18E-03
41	GO:0051639: actin filament network formation	1.18E-03
42	GO:0006537: glutamate biosynthetic process	1.18E-03
43	GO:0010731: protein glutathionylation	1.18E-03
44	GO:0071323: cellular response to chitin	1.18E-03
45	GO:0051764: actin crosslink formation	1.57E-03
46	GO:0022622: root system development	1.57E-03
47	GO:0007112: male meiosis cytokinesis	1.57E-03
48	GO:0000460: maturation of 5.8S rRNA	1.57E-03
49	GO:0006097: glyoxylate cycle	2.01E-03
50	GO:0009229: thiamine diphosphate biosynthetic process	2.01E-03
51	GO:0009247: glycolipid biosynthetic process	2.01E-03
52	GO:0009738: abscisic acid-activated signaling pathway	2.26E-03
53	GO:0002238: response to molecule of fungal origin	2.48E-03
54	GO:0006354: DNA-templated transcription, elongation	2.48E-03
55	GO:0001731: formation of translation preinitiation complex	2.48E-03
56	GO:0000470: maturation of LSU-rRNA	2.48E-03
57	GO:0009228: thiamine biosynthetic process	2.48E-03
58	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.97E-03
59	GO:0000911: cytokinesis by cell plate formation	2.97E-03
60	GO:0000054: ribosomal subunit export from nucleus	2.97E-03
61	GO:0045926: negative regulation of growth	2.97E-03
62	GO:0006904: vesicle docking involved in exocytosis	3.04E-03
63	GO:0010044: response to aluminum ion	3.50E-03
64	GO:0046470: phosphatidylcholine metabolic process	3.50E-03
65	GO:0031540: regulation of anthocyanin biosynthetic process	4.06E-03
66	GO:0006102: isocitrate metabolic process	4.06E-03
67	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.06E-03
68	GO:1900150: regulation of defense response to fungus	4.06E-03
69	GO:0009850: auxin metabolic process	4.06E-03
70	GO:0019375: galactolipid biosynthetic process	4.06E-03
71	GO:0006972: hyperosmotic response	4.65E-03
72	GO:0006367: transcription initiation from RNA polymerase II promoter	4.65E-03
73	GO:0010204: defense response signaling pathway, resistance gene-independent	4.65E-03
74	GO:0006379: mRNA cleavage	5.27E-03
75	GO:0015780: nucleotide-sugar transport	5.27E-03
76	GO:0007338: single fertilization	5.27E-03
77	GO:0010112: regulation of systemic acquired resistance	5.27E-03
78	GO:0008202: steroid metabolic process	5.91E-03
79	GO:0030042: actin filament depolymerization	5.91E-03
80	GO:0009086: methionine biosynthetic process	5.91E-03
81	GO:0043069: negative regulation of programmed cell death	6.58E-03
82	GO:0000038: very long-chain fatty acid metabolic process	7.28E-03
83	GO:0019684: photosynthesis, light reaction	7.28E-03
84	GO:0009089: lysine biosynthetic process via diaminopimelate	7.28E-03
85	GO:0045037: protein import into chloroplast stroma	8.00E-03
86	GO:0030036: actin cytoskeleton organization	8.75E-03
87	GO:0018107: peptidyl-threonine phosphorylation	8.75E-03
88	GO:0006626: protein targeting to mitochondrion	8.75E-03
89	GO:0009846: pollen germination	9.11E-03
90	GO:0042538: hyperosmotic salinity response	9.11E-03
91	GO:0009266: response to temperature stimulus	9.52E-03
92	GO:0002237: response to molecule of bacterial origin	9.52E-03
93	GO:0007034: vacuolar transport	9.52E-03
94	GO:0006446: regulation of translational initiation	9.52E-03
95	GO:0070588: calcium ion transmembrane transport	1.03E-02
96	GO:0007030: Golgi organization	1.03E-02
97	GO:0010200: response to chitin	1.08E-02
98	GO:0006289: nucleotide-excision repair	1.20E-02
99	GO:0000027: ribosomal large subunit assembly	1.20E-02
100	GO:0045333: cellular respiration	1.20E-02
101	GO:0080147: root hair cell development	1.20E-02
102	GO:0051017: actin filament bundle assembly	1.20E-02
103	GO:0009620: response to fungus	1.27E-02
104	GO:0043622: cortical microtubule organization	1.28E-02
105	GO:0045454: cell redox homeostasis	1.30E-02
106	GO:0006334: nucleosome assembly	1.37E-02
107	GO:0048278: vesicle docking	1.37E-02
108	GO:0006396: RNA processing	1.44E-02
109	GO:0018105: peptidyl-serine phosphorylation	1.44E-02
110	GO:0009814: defense response, incompatible interaction	1.46E-02
111	GO:0071215: cellular response to abscisic acid stimulus	1.56E-02
112	GO:0009751: response to salicylic acid	1.66E-02
113	GO:0009845: seed germination	1.90E-02
114	GO:0061025: membrane fusion	2.05E-02
115	GO:0006413: translational initiation	2.25E-02
116	GO:0071554: cell wall organization or biogenesis	2.27E-02
117	GO:0002229: defense response to oomycetes	2.27E-02
118	GO:0010193: response to ozone	2.27E-02
119	GO:0032502: developmental process	2.37E-02
120	GO:0010150: leaf senescence	2.42E-02
121	GO:0030163: protein catabolic process	2.48E-02
122	GO:0009567: double fertilization forming a zygote and endosperm	2.60E-02
123	GO:0006464: cellular protein modification process	2.60E-02
124	GO:0007166: cell surface receptor signaling pathway	2.77E-02
125	GO:0008380: RNA splicing	2.89E-02
126	GO:0010029: regulation of seed germination	3.06E-02
127	GO:0006906: vesicle fusion	3.19E-02
128	GO:0035556: intracellular signal transduction	3.72E-02
129	GO:0006970: response to osmotic stress	4.02E-02
130	GO:0000724: double-strand break repair via homologous recombination	4.08E-02
131	GO:0009637: response to blue light	4.21E-02
132	GO:0009867: jasmonic acid mediated signaling pathway	4.21E-02
133	GO:0009723: response to ethylene	4.32E-02
134	GO:0006099: tricarboxylic acid cycle	4.34E-02
135	GO:0055085: transmembrane transport	4.66E-02
136	GO:0006887: exocytosis	4.76E-02
137	GO:0006897: endocytosis	4.76E-02
138	GO:0016192: vesicle-mediated transport	4.86E-02
139	GO:0046777: protein autophosphorylation	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	0.00E+00
2	GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	0.00E+00
3	GO:0004555: alpha,alpha-trehalase activity	0.00E+00
4	GO:0005212: structural constituent of eye lens	0.00E+00
5	GO:0050334: thiaminase activity	0.00E+00
6	GO:0010285: L,L-diaminopimelate aminotransferase activity	2.29E-04
7	GO:0015927: trehalase activity	2.29E-04
8	GO:0004657: proline dehydrogenase activity	2.29E-04
9	GO:0047150: betaine-homocysteine S-methyltransferase activity	2.29E-04
10	GO:0046481: digalactosyldiacylglycerol synthase activity	2.29E-04
11	GO:0003994: aconitate hydratase activity	5.10E-04
12	GO:0032934: sterol binding	5.10E-04
13	GO:0015036: disulfide oxidoreductase activity	5.10E-04
14	GO:0005509: calcium ion binding	5.64E-04
15	GO:0005457: GDP-fucose transmembrane transporter activity	8.29E-04
16	GO:0003979: UDP-glucose 6-dehydrogenase activity	8.29E-04
17	GO:0046872: metal ion binding	1.06E-03
18	GO:0043023: ribosomal large subunit binding	1.18E-03
19	GO:0004707: MAP kinase activity	1.18E-03
20	GO:0035250: UDP-galactosyltransferase activity	1.18E-03
21	GO:0010178: IAA-amino acid conjugate hydrolase activity	1.18E-03
22	GO:0009916: alternative oxidase activity	1.57E-03
23	GO:0008641: small protein activating enzyme activity	2.01E-03
24	GO:0004040: amidase activity	2.01E-03
25	GO:0015035: protein disulfide oxidoreductase activity	2.34E-03
26	GO:0004656: procollagen-proline 4-dioxygenase activity	2.97E-03
27	GO:0004722: protein serine/threonine phosphatase activity	3.28E-03
28	GO:0043022: ribosome binding	4.06E-03
29	GO:0004525: ribonuclease III activity	4.06E-03
30	GO:0008142: oxysterol binding	4.65E-03
31	GO:0004630: phospholipase D activity	4.65E-03
32	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	4.65E-03
33	GO:0003743: translation initiation factor activity	5.49E-03
34	GO:0016301: kinase activity	6.81E-03
35	GO:0015198: oligopeptide transporter activity	8.00E-03
36	GO:0031072: heat shock protein binding	8.75E-03
37	GO:0005262: calcium channel activity	8.75E-03
38	GO:0005388: calcium-transporting ATPase activity	8.75E-03
39	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	8.75E-03
40	GO:0008061: chitin binding	1.03E-02
41	GO:0031418: L-ascorbic acid binding	1.20E-02
42	GO:0051087: chaperone binding	1.28E-02
43	GO:0016874: ligase activity	1.31E-02
44	GO:0005515: protein binding	1.44E-02
45	GO:0003756: protein disulfide isomerase activity	1.65E-02
46	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.25E-02
47	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.48E-02
48	GO:0051015: actin filament binding	2.48E-02
49	GO:0005524: ATP binding	2.53E-02
50	GO:0008483: transaminase activity	2.71E-02
51	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.71E-02
52	GO:0008237: metallopeptidase activity	2.71E-02
53	GO:0008194: UDP-glycosyltransferase activity	2.71E-02
54	GO:0016413: O-acetyltransferase activity	2.83E-02
55	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.07E-02
56	GO:0008375: acetylglucosaminyltransferase activity	3.19E-02
57	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.19E-02
58	GO:0004683: calmodulin-dependent protein kinase activity	3.31E-02
59	GO:0004806: triglyceride lipase activity	3.31E-02
60	GO:0030247: polysaccharide binding	3.31E-02
61	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.56E-02
62	GO:0004222: metalloendopeptidase activity	3.81E-02
63	GO:0003682: chromatin binding	3.95E-02
64	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.21E-02
65	GO:0016740: transferase activity	4.44E-02
66	GO:0000149: SNARE binding	4.48E-02
67	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.48E-02
68	GO:0051539: 4 iron, 4 sulfur cluster binding	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0005674: transcription factor TFIIF complex	0.00E+00
2	GO:0031314: extrinsic component of mitochondrial inner membrane	5.10E-04
3	GO:0016021: integral component of membrane	5.37E-04
4	GO:0032432: actin filament bundle	1.18E-03
5	GO:0009898: cytoplasmic side of plasma membrane	1.57E-03
6	GO:0005789: endoplasmic reticulum membrane	1.70E-03
7	GO:0016282: eukaryotic 43S preinitiation complex	2.48E-03
8	GO:0033290: eukaryotic 48S preinitiation complex	2.97E-03
9	GO:0030687: preribosome, large subunit precursor	3.50E-03
10	GO:0005743: mitochondrial inner membrane	3.51E-03
11	GO:0005737: cytoplasm	4.97E-03
12	GO:0005884: actin filament	7.28E-03
13	GO:0005783: endoplasmic reticulum	7.64E-03
14	GO:0005795: Golgi stack	1.03E-02
15	GO:0030176: integral component of endoplasmic reticulum membrane	1.03E-02
16	GO:0022625: cytosolic large ribosomal subunit	1.10E-02
17	GO:0070469: respiratory chain	1.28E-02
18	GO:0015629: actin cytoskeleton	1.56E-02
19	GO:0009543: chloroplast thylakoid lumen	1.75E-02
20	GO:0043231: intracellular membrane-bounded organelle	1.92E-02
21	GO:0009504: cell plate	2.16E-02
22	GO:0000145: exocyst	2.37E-02
23	GO:0071944: cell periphery	2.48E-02
24	GO:0009707: chloroplast outer membrane	3.56E-02
25	GO:0015934: large ribosomal subunit	3.94E-02
26	GO:0000325: plant-type vacuole	3.94E-02
27	GO:0000139: Golgi membrane	4.19E-02
28	GO:0031201: SNARE complex	4.76E-02
29	GO:0031902: late endosome membrane	4.76E-02