Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G25780

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002752: cell surface pattern recognition receptor signaling pathway0.00E+00
2GO:0071327: cellular response to trehalose stimulus0.00E+00
3GO:0043048: dolichyl monophosphate biosynthetic process0.00E+00
4GO:0033198: response to ATP0.00E+00
5GO:1900367: positive regulation of defense response to insect0.00E+00
6GO:0002764: immune response-regulating signaling pathway0.00E+00
7GO:0033587: shikimate biosynthetic process0.00E+00
8GO:0009268: response to pH0.00E+00
9GO:0032499: detection of peptidoglycan0.00E+00
10GO:0006468: protein phosphorylation3.28E-07
11GO:0042742: defense response to bacterium2.88E-06
12GO:0031348: negative regulation of defense response6.54E-06
13GO:0010200: response to chitin2.25E-05
14GO:0060548: negative regulation of cell death5.45E-05
15GO:0009626: plant-type hypersensitive response5.85E-05
16GO:0009611: response to wounding5.92E-05
17GO:0006952: defense response7.04E-05
18GO:0070588: calcium ion transmembrane transport7.18E-05
19GO:0046777: protein autophosphorylation1.75E-04
20GO:0048482: plant ovule morphogenesis2.87E-04
21GO:0010365: positive regulation of ethylene biosynthetic process2.87E-04
22GO:0051938: L-glutamate import2.87E-04
23GO:0051245: negative regulation of cellular defense response2.87E-04
24GO:0015969: guanosine tetraphosphate metabolic process2.87E-04
25GO:0099132: ATP hydrolysis coupled cation transmembrane transport2.87E-04
26GO:0010941: regulation of cell death2.87E-04
27GO:0051180: vitamin transport2.87E-04
28GO:0030974: thiamine pyrophosphate transport2.87E-04
29GO:1901183: positive regulation of camalexin biosynthetic process2.87E-04
30GO:0010045: response to nickel cation2.87E-04
31GO:0019673: GDP-mannose metabolic process2.87E-04
32GO:0032491: detection of molecule of fungal origin2.87E-04
33GO:0009751: response to salicylic acid3.46E-04
34GO:0090333: regulation of stomatal closure4.20E-04
35GO:0046939: nucleotide phosphorylation6.30E-04
36GO:0080151: positive regulation of salicylic acid mediated signaling pathway6.30E-04
37GO:0015802: basic amino acid transport6.30E-04
38GO:0080185: effector dependent induction by symbiont of host immune response6.30E-04
39GO:0010618: aerenchyma formation6.30E-04
40GO:0031349: positive regulation of defense response6.30E-04
41GO:0010042: response to manganese ion6.30E-04
42GO:0015893: drug transport6.30E-04
43GO:0015865: purine nucleotide transport6.30E-04
44GO:0019725: cellular homeostasis6.30E-04
45GO:0043091: L-arginine import6.30E-04
46GO:0055046: microgametogenesis8.67E-04
47GO:0034605: cellular response to heat9.74E-04
48GO:0002237: response to molecule of bacterial origin9.74E-04
49GO:0046621: negative regulation of organ growth1.02E-03
50GO:0048281: inflorescence morphogenesis1.02E-03
51GO:0010498: proteasomal protein catabolic process1.02E-03
52GO:0002230: positive regulation of defense response to virus by host1.02E-03
53GO:0016045: detection of bacterium1.02E-03
54GO:0034051: negative regulation of plant-type hypersensitive response1.02E-03
55GO:1900140: regulation of seedling development1.02E-03
56GO:0010359: regulation of anion channel activity1.02E-03
57GO:0042351: 'de novo' GDP-L-fucose biosynthetic process1.02E-03
58GO:0051176: positive regulation of sulfur metabolic process1.02E-03
59GO:0009867: jasmonic acid mediated signaling pathway1.08E-03
60GO:0010167: response to nitrate1.09E-03
61GO:0035556: intracellular signal transduction1.25E-03
62GO:0009863: salicylic acid mediated signaling pathway1.34E-03
63GO:0048194: Golgi vesicle budding1.46E-03
64GO:0046902: regulation of mitochondrial membrane permeability1.46E-03
65GO:0030100: regulation of endocytosis1.46E-03
66GO:0072583: clathrin-dependent endocytosis1.46E-03
67GO:0010306: rhamnogalacturonan II biosynthetic process1.46E-03
68GO:0006612: protein targeting to membrane1.46E-03
69GO:0071323: cellular response to chitin1.46E-03
70GO:0046836: glycolipid transport1.46E-03
71GO:0000187: activation of MAPK activity1.46E-03
72GO:0006470: protein dephosphorylation1.61E-03
73GO:0009617: response to bacterium1.72E-03
74GO:0016226: iron-sulfur cluster assembly1.77E-03
75GO:2000022: regulation of jasmonic acid mediated signaling pathway1.77E-03
76GO:0006855: drug transmembrane transport1.81E-03
77GO:0046345: abscisic acid catabolic process1.96E-03
78GO:0010483: pollen tube reception1.96E-03
79GO:0045088: regulation of innate immune response1.96E-03
80GO:0010363: regulation of plant-type hypersensitive response1.96E-03
81GO:0010107: potassium ion import1.96E-03
82GO:0071219: cellular response to molecule of bacterial origin1.96E-03
83GO:0010508: positive regulation of autophagy1.96E-03
84GO:0080142: regulation of salicylic acid biosynthetic process1.96E-03
85GO:0007165: signal transduction2.38E-03
86GO:0010225: response to UV-C2.50E-03
87GO:0032957: inositol trisphosphate metabolic process2.50E-03
88GO:0009697: salicylic acid biosynthetic process2.50E-03
89GO:0009737: response to abscisic acid2.51E-03
90GO:0009620: response to fungus3.03E-03
91GO:0048317: seed morphogenesis3.08E-03
92GO:1900425: negative regulation of defense response to bacterium3.08E-03
93GO:0018258: protein O-linked glycosylation via hydroxyproline3.08E-03
94GO:0046855: inositol phosphate dephosphorylation3.08E-03
95GO:0010942: positive regulation of cell death3.08E-03
96GO:0010405: arabinogalactan protein metabolic process3.08E-03
97GO:0002229: defense response to oomycetes3.26E-03
98GO:0016032: viral process3.48E-03
99GO:0009742: brassinosteroid mediated signaling pathway3.66E-03
100GO:2000037: regulation of stomatal complex patterning3.71E-03
101GO:0010310: regulation of hydrogen peroxide metabolic process3.71E-03
102GO:0009423: chorismate biosynthetic process3.71E-03
103GO:0010161: red light signaling pathway4.38E-03
104GO:1900056: negative regulation of leaf senescence4.38E-03
105GO:0010038: response to metal ion4.38E-03
106GO:0001666: response to hypoxia4.70E-03
107GO:0009615: response to virus4.70E-03
108GO:0009816: defense response to bacterium, incompatible interaction4.97E-03
109GO:0009061: anaerobic respiration5.08E-03
110GO:0009787: regulation of abscisic acid-activated signaling pathway5.08E-03
111GO:0030162: regulation of proteolysis5.08E-03
112GO:1900150: regulation of defense response to fungus5.08E-03
113GO:0032875: regulation of DNA endoreduplication5.08E-03
114GO:0045010: actin nucleation5.08E-03
115GO:0009627: systemic acquired resistance5.25E-03
116GO:2000031: regulation of salicylic acid mediated signaling pathway5.82E-03
117GO:0010099: regulation of photomorphogenesis5.82E-03
118GO:0009932: cell tip growth5.82E-03
119GO:0010204: defense response signaling pathway, resistance gene-independent5.82E-03
120GO:0009817: defense response to fungus, incompatible interaction6.14E-03
121GO:0008219: cell death6.14E-03
122GO:0009051: pentose-phosphate shunt, oxidative branch6.60E-03
123GO:0006098: pentose-phosphate shunt6.60E-03
124GO:0009060: aerobic respiration6.60E-03
125GO:0010150: leaf senescence6.82E-03
126GO:1900426: positive regulation of defense response to bacterium7.41E-03
127GO:0048354: mucilage biosynthetic process involved in seed coat development7.41E-03
128GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway7.41E-03
129GO:0045087: innate immune response7.78E-03
130GO:0009409: response to cold8.25E-03
131GO:0009970: cellular response to sulfate starvation8.26E-03
132GO:0007064: mitotic sister chromatid cohesion8.26E-03
133GO:0006535: cysteine biosynthetic process from serine8.26E-03
134GO:0043069: negative regulation of programmed cell death8.26E-03
135GO:0046856: phosphatidylinositol dephosphorylation9.14E-03
136GO:0009073: aromatic amino acid family biosynthetic process9.14E-03
137GO:0006887: exocytosis9.26E-03
138GO:0051707: response to other organism1.01E-02
139GO:0008361: regulation of cell size1.01E-02
140GO:0002213: defense response to insect1.01E-02
141GO:0015706: nitrate transport1.01E-02
142GO:0010105: negative regulation of ethylene-activated signaling pathway1.01E-02
143GO:0009785: blue light signaling pathway1.10E-02
144GO:0006006: glucose metabolic process1.10E-02
145GO:0010229: inflorescence development1.10E-02
146GO:0018107: peptidyl-threonine phosphorylation1.10E-02
147GO:0010540: basipetal auxin transport1.20E-02
148GO:0009266: response to temperature stimulus1.20E-02
149GO:0007034: vacuolar transport1.20E-02
150GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.22E-02
151GO:0010053: root epidermal cell differentiation1.30E-02
152GO:0090351: seedling development1.30E-02
153GO:0046854: phosphatidylinositol phosphorylation1.30E-02
154GO:0006970: response to osmotic stress1.31E-02
155GO:0009809: lignin biosynthetic process1.36E-02
156GO:0006486: protein glycosylation1.36E-02
157GO:0009414: response to water deprivation1.39E-02
158GO:0050832: defense response to fungus1.45E-02
159GO:0009738: abscisic acid-activated signaling pathway1.46E-02
160GO:0019344: cysteine biosynthetic process1.51E-02
161GO:0009909: regulation of flower development1.51E-02
162GO:0048278: vesicle docking1.73E-02
163GO:0003333: amino acid transmembrane transport1.73E-02
164GO:0010017: red or far-red light signaling pathway1.85E-02
165GO:0009814: defense response, incompatible interaction1.85E-02
166GO:0010227: floral organ abscission1.96E-02
167GO:0009625: response to insect1.96E-02
168GO:0019722: calcium-mediated signaling2.08E-02
169GO:0009561: megagametogenesis2.08E-02
170GO:0070417: cellular response to cold2.21E-02
171GO:0010118: stomatal movement2.33E-02
172GO:0042391: regulation of membrane potential2.33E-02
173GO:0071472: cellular response to salt stress2.46E-02
174GO:0009408: response to heat2.56E-02
175GO:0016310: phosphorylation2.57E-02
176GO:0048544: recognition of pollen2.59E-02
177GO:0061025: membrane fusion2.59E-02
178GO:0009749: response to glucose2.72E-02
179GO:0008654: phospholipid biosynthetic process2.72E-02
180GO:0006810: transport2.78E-02
181GO:0009753: response to jasmonic acid2.79E-02
182GO:0006891: intra-Golgi vesicle-mediated transport2.86E-02
183GO:0009630: gravitropism3.00E-02
184GO:0006904: vesicle docking involved in exocytosis3.42E-02
185GO:0009873: ethylene-activated signaling pathway3.51E-02
186GO:0051607: defense response to virus3.57E-02
187GO:0009911: positive regulation of flower development3.72E-02
188GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.74E-02
189GO:0007166: cell surface receptor signaling pathway3.82E-02
190GO:0010468: regulation of gene expression3.99E-02
191GO:0042128: nitrate assimilation4.02E-02
192GO:0006906: vesicle fusion4.02E-02
193GO:0048573: photoperiodism, flowering4.17E-02
194GO:0016049: cell growth4.33E-02
195GO:0006499: N-terminal protein myristoylation4.81E-02
196GO:0009826: unidimensional cell growth4.96E-02
197GO:0010119: regulation of stomatal movement4.97E-02
198GO:0010043: response to zinc ion4.97E-02
RankGO TermAdjusted P value
1GO:0004168: dolichol kinase activity0.00E+00
2GO:0003856: 3-dehydroquinate synthase activity0.00E+00
3GO:0010290: chlorophyll catabolite transmembrane transporter activity0.00E+00
4GO:0005522: profilin binding0.00E+00
5GO:0015431: glutathione S-conjugate-exporting ATPase activity0.00E+00
6GO:2001080: chitosan binding0.00E+00
7GO:0016301: kinase activity5.64E-10
8GO:0004674: protein serine/threonine kinase activity1.06E-08
9GO:0005524: ATP binding8.63E-08
10GO:0005515: protein binding1.67E-05
11GO:0005388: calcium-transporting ATPase activity4.94E-05
12GO:0019199: transmembrane receptor protein kinase activity5.45E-05
13GO:0004672: protein kinase activity8.01E-05
14GO:0070696: transmembrane receptor protein serine/threonine kinase binding8.61E-05
15GO:0033612: receptor serine/threonine kinase binding1.33E-04
16GO:0004012: phospholipid-translocating ATPase activity1.71E-04
17GO:0004714: transmembrane receptor protein tyrosine kinase activity2.83E-04
18GO:0032050: clathrin heavy chain binding2.87E-04
19GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity2.87E-04
20GO:1901149: salicylic acid binding2.87E-04
21GO:0090422: thiamine pyrophosphate transporter activity2.87E-04
22GO:0015085: calcium ion transmembrane transporter activity2.87E-04
23GO:0008446: GDP-mannose 4,6-dehydratase activity2.87E-04
24GO:0022821: potassium ion antiporter activity6.30E-04
25GO:0008728: GTP diphosphokinase activity6.30E-04
26GO:0008559: xenobiotic-transporting ATPase activity6.69E-04
27GO:0015238: drug transmembrane transporter activity8.58E-04
28GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism8.67E-04
29GO:0016174: NAD(P)H oxidase activity1.02E-03
30GO:0052659: inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity1.02E-03
31GO:0016595: glutamate binding1.02E-03
32GO:0009001: serine O-acetyltransferase activity1.46E-03
33GO:0015189: L-lysine transmembrane transporter activity1.46E-03
34GO:0017089: glycolipid transporter activity1.46E-03
35GO:0019201: nucleotide kinase activity1.46E-03
36GO:0004445: inositol-polyphosphate 5-phosphatase activity1.46E-03
37GO:0015181: arginine transmembrane transporter activity1.46E-03
38GO:0052658: inositol-1,4,5-trisphosphate 5-phosphatase activity1.46E-03
39GO:0043424: protein histidine kinase binding1.47E-03
40GO:0004345: glucose-6-phosphate dehydrogenase activity1.96E-03
41GO:0051861: glycolipid binding1.96E-03
42GO:0005313: L-glutamate transmembrane transporter activity1.96E-03
43GO:0010294: abscisic acid glucosyltransferase activity2.50E-03
44GO:0005471: ATP:ADP antiporter activity2.50E-03
45GO:0043531: ADP binding2.95E-03
46GO:0004605: phosphatidate cytidylyltransferase activity3.08E-03
47GO:1990714: hydroxyproline O-galactosyltransferase activity3.08E-03
48GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity3.08E-03
49GO:0035252: UDP-xylosyltransferase activity3.08E-03
50GO:0004017: adenylate kinase activity3.71E-03
51GO:0019900: kinase binding3.71E-03
52GO:0005509: calcium ion binding3.89E-03
53GO:0052747: sinapyl alcohol dehydrogenase activity5.08E-03
54GO:0004708: MAP kinase kinase activity5.08E-03
55GO:0008375: acetylglucosaminyltransferase activity5.25E-03
56GO:0004722: protein serine/threonine phosphatase activity5.38E-03
57GO:0004806: triglyceride lipase activity5.54E-03
58GO:0004430: 1-phosphatidylinositol 4-kinase activity5.82E-03
59GO:0004675: transmembrane receptor protein serine/threonine kinase activity6.23E-03
60GO:0015297: antiporter activity6.43E-03
61GO:0071949: FAD binding6.60E-03
62GO:0015112: nitrate transmembrane transporter activity7.41E-03
63GO:0015174: basic amino acid transmembrane transporter activity7.41E-03
64GO:0004568: chitinase activity8.26E-03
65GO:0008047: enzyme activator activity8.26E-03
66GO:0004713: protein tyrosine kinase activity8.26E-03
67GO:0005543: phospholipid binding9.14E-03
68GO:0008378: galactosyltransferase activity1.01E-02
69GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity1.01E-02
70GO:0045551: cinnamyl-alcohol dehydrogenase activity1.01E-02
71GO:0031072: heat shock protein binding1.10E-02
72GO:0030552: cAMP binding1.30E-02
73GO:0030553: cGMP binding1.30E-02
74GO:0008061: chitin binding1.30E-02
75GO:0004190: aspartic-type endopeptidase activity1.30E-02
76GO:0016298: lipase activity1.41E-02
77GO:0043130: ubiquitin binding1.51E-02
78GO:0005216: ion channel activity1.62E-02
79GO:0005215: transporter activity1.72E-02
80GO:0004707: MAP kinase activity1.73E-02
81GO:0005249: voltage-gated potassium channel activity2.33E-02
82GO:0030551: cyclic nucleotide binding2.33E-02
83GO:0003713: transcription coactivator activity2.46E-02
84GO:0019901: protein kinase binding2.72E-02
85GO:0005516: calmodulin binding2.82E-02
86GO:0051015: actin filament binding3.13E-02
87GO:0005525: GTP binding3.21E-02
88GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.42E-02
89GO:0004721: phosphoprotein phosphatase activity4.17E-02
90GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.25E-02
91GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.33E-02
92GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.97E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane3.66E-10
2GO:0005911: cell-cell junction2.87E-04
3GO:0016021: integral component of membrane6.05E-04
4GO:0005901: caveola6.30E-04
5GO:0030139: endocytic vesicle1.02E-03
6GO:0005887: integral component of plasma membrane2.65E-03
7GO:0012505: endomembrane system3.27E-03
8GO:0000325: plant-type vacuole7.10E-03
9GO:0005740: mitochondrial envelope8.26E-03
10GO:0030125: clathrin vesicle coat8.26E-03
11GO:0090404: pollen tube tip9.14E-03
12GO:0005768: endosome1.21E-02
13GO:0005795: Golgi stack1.30E-02
14GO:0030176: integral component of endoplasmic reticulum membrane1.30E-02
15GO:0043234: protein complex1.40E-02
16GO:0005758: mitochondrial intermembrane space1.51E-02
17GO:0043231: intracellular membrane-bounded organelle2.89E-02
18GO:0000145: exocyst3.00E-02
19GO:0019005: SCF ubiquitin ligase complex4.49E-02
20GO:0005774: vacuolar membrane4.82E-02
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Gene type



Gene DE type