co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G25717

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
2	GO:0042821: pyridoxal biosynthetic process	0.00E+00
3	GO:0042407: cristae formation	0.00E+00
4	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
5	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
6	GO:0061157: mRNA destabilization	0.00E+00
7	GO:0002184: cytoplasmic translational termination	0.00E+00
8	GO:0042820: vitamin B6 catabolic process	0.00E+00
9	GO:1905157: positive regulation of photosynthesis	0.00E+00
10	GO:0030155: regulation of cell adhesion	0.00E+00
11	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
12	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
13	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
14	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
15	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
16	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
17	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
18	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
19	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
20	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
21	GO:1902326: positive regulation of chlorophyll biosynthetic process	0.00E+00
22	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
23	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
24	GO:0017038: protein import	0.00E+00
25	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
26	GO:0015995: chlorophyll biosynthetic process	2.41E-10
27	GO:0015979: photosynthesis	2.11E-08
28	GO:0009773: photosynthetic electron transport in photosystem I	9.70E-07
29	GO:0010027: thylakoid membrane organization	1.12E-06
30	GO:1901259: chloroplast rRNA processing	1.16E-06
31	GO:0009658: chloroplast organization	1.80E-06
32	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.21E-06
33	GO:0018026: peptidyl-lysine monomethylation	3.58E-05
34	GO:0048437: floral organ development	8.43E-05
35	GO:0009657: plastid organization	1.63E-04
36	GO:0032544: plastid translation	1.63E-04
37	GO:0046739: transport of virus in multicellular host	2.26E-04
38	GO:0006782: protoporphyrinogen IX biosynthetic process	3.42E-04
39	GO:0006021: inositol biosynthetic process	3.74E-04
40	GO:0009765: photosynthesis, light harvesting	3.74E-04
41	GO:0022622: root system development	3.74E-04
42	GO:0005983: starch catabolic process	5.01E-04
43	GO:0019252: starch biosynthetic process	5.05E-04
44	GO:2000012: regulation of auxin polar transport	5.94E-04
45	GO:0009742: brassinosteroid mediated signaling pathway	5.98E-04
46	GO:0032502: developmental process	6.24E-04
47	GO:0009416: response to light stimulus	7.44E-04
48	GO:0042793: transcription from plastid promoter	7.66E-04
49	GO:0010190: cytochrome b6f complex assembly	7.66E-04
50	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	7.66E-04
51	GO:1905039: carboxylic acid transmembrane transport	9.32E-04
52	GO:0043686: co-translational protein modification	9.32E-04
53	GO:1905200: gibberellic acid transmembrane transport	9.32E-04
54	GO:0000305: response to oxygen radical	9.32E-04
55	GO:0000023: maltose metabolic process	9.32E-04
56	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	9.32E-04
57	GO:0043007: maintenance of rDNA	9.32E-04
58	GO:1902458: positive regulation of stomatal opening	9.32E-04
59	GO:0010063: positive regulation of trichoblast fate specification	9.32E-04
60	GO:0034337: RNA folding	9.32E-04
61	GO:0015904: tetracycline transport	9.32E-04
62	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	9.32E-04
63	GO:0000476: maturation of 4.5S rRNA	9.32E-04
64	GO:0010480: microsporocyte differentiation	9.32E-04
65	GO:0009443: pyridoxal 5'-phosphate salvage	9.32E-04
66	GO:0000967: rRNA 5'-end processing	9.32E-04
67	GO:0006659: phosphatidylserine biosynthetic process	9.32E-04
68	GO:0005991: trehalose metabolic process	9.32E-04
69	GO:0080112: seed growth	9.32E-04
70	GO:0005980: glycogen catabolic process	9.32E-04
71	GO:0042371: vitamin K biosynthetic process	9.32E-04
72	GO:0030198: extracellular matrix organization	9.32E-04
73	GO:0009955: adaxial/abaxial pattern specification	1.01E-03
74	GO:0042372: phylloquinone biosynthetic process	1.01E-03
75	GO:0009772: photosynthetic electron transport in photosystem II	1.29E-03
76	GO:0032880: regulation of protein localization	1.29E-03
77	GO:0046620: regulation of organ growth	1.61E-03
78	GO:0006353: DNA-templated transcription, termination	1.61E-03
79	GO:0010497: plasmodesmata-mediated intercellular transport	1.97E-03
80	GO:0034470: ncRNA processing	2.03E-03
81	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.03E-03
82	GO:0006423: cysteinyl-tRNA aminoacylation	2.03E-03
83	GO:0007154: cell communication	2.03E-03
84	GO:0060151: peroxisome localization	2.03E-03
85	GO:0051645: Golgi localization	2.03E-03
86	GO:1903426: regulation of reactive oxygen species biosynthetic process	2.03E-03
87	GO:0006568: tryptophan metabolic process	2.03E-03
88	GO:0071497: cellular response to freezing	2.03E-03
89	GO:0042325: regulation of phosphorylation	2.03E-03
90	GO:0009629: response to gravity	2.03E-03
91	GO:0010270: photosystem II oxygen evolving complex assembly	2.03E-03
92	GO:1904143: positive regulation of carotenoid biosynthetic process	2.03E-03
93	GO:0034599: cellular response to oxidative stress	2.32E-03
94	GO:0006783: heme biosynthetic process	2.37E-03
95	GO:0010182: sugar mediated signaling pathway	2.58E-03
96	GO:0006662: glycerol ether metabolic process	2.58E-03
97	GO:0009958: positive gravitropism	2.58E-03
98	GO:0006779: porphyrin-containing compound biosynthetic process	2.81E-03
99	GO:0006954: inflammatory response	3.37E-03
100	GO:0009405: pathogenesis	3.37E-03
101	GO:0051646: mitochondrion localization	3.37E-03
102	GO:0034051: negative regulation of plant-type hypersensitive response	3.37E-03
103	GO:0005977: glycogen metabolic process	3.37E-03
104	GO:0033591: response to L-ascorbic acid	3.37E-03
105	GO:0048281: inflorescence morphogenesis	3.37E-03
106	GO:0090436: leaf pavement cell development	3.37E-03
107	GO:0006696: ergosterol biosynthetic process	3.37E-03
108	GO:0019684: photosynthesis, light reaction	3.81E-03
109	GO:1901657: glycosyl compound metabolic process	4.02E-03
110	GO:0016024: CDP-diacylglycerol biosynthetic process	4.38E-03
111	GO:0010731: protein glutathionylation	4.92E-03
112	GO:0009152: purine ribonucleotide biosynthetic process	4.92E-03
113	GO:0010148: transpiration	4.92E-03
114	GO:0010601: positive regulation of auxin biosynthetic process	4.92E-03
115	GO:0046653: tetrahydrofolate metabolic process	4.92E-03
116	GO:0045338: farnesyl diphosphate metabolic process	4.92E-03
117	GO:0006166: purine ribonucleoside salvage	4.92E-03
118	GO:0006168: adenine salvage	4.92E-03
119	GO:0016556: mRNA modification	4.92E-03
120	GO:0010071: root meristem specification	4.92E-03
121	GO:0006020: inositol metabolic process	4.92E-03
122	GO:0009052: pentose-phosphate shunt, non-oxidative branch	4.92E-03
123	GO:0010306: rhamnogalacturonan II biosynthetic process	4.92E-03
124	GO:0043572: plastid fission	4.92E-03
125	GO:0009102: biotin biosynthetic process	4.92E-03
126	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	4.92E-03
127	GO:0009767: photosynthetic electron transport chain	4.99E-03
128	GO:0048467: gynoecium development	5.64E-03
129	GO:0010207: photosystem II assembly	5.64E-03
130	GO:0006810: transport	6.55E-03
131	GO:0006546: glycine catabolic process	6.66E-03
132	GO:1901141: regulation of lignin biosynthetic process	6.66E-03
133	GO:0019464: glycine decarboxylation via glycine cleavage system	6.66E-03
134	GO:0006109: regulation of carbohydrate metabolic process	6.66E-03
135	GO:0006749: glutathione metabolic process	6.66E-03
136	GO:0010109: regulation of photosynthesis	6.66E-03
137	GO:0010107: potassium ion import	6.66E-03
138	GO:0006221: pyrimidine nucleotide biosynthetic process	6.66E-03
139	GO:0010021: amylopectin biosynthetic process	6.66E-03
140	GO:0018298: protein-chromophore linkage	7.71E-03
141	GO:0009817: defense response to fungus, incompatible interaction	7.71E-03
142	GO:0009813: flavonoid biosynthetic process	8.22E-03
143	GO:0031365: N-terminal protein amino acid modification	8.59E-03
144	GO:0016120: carotene biosynthetic process	8.59E-03
145	GO:0032543: mitochondrial translation	8.59E-03
146	GO:0098719: sodium ion import across plasma membrane	8.59E-03
147	GO:0006564: L-serine biosynthetic process	8.59E-03
148	GO:0010236: plastoquinone biosynthetic process	8.59E-03
149	GO:0045038: protein import into chloroplast thylakoid membrane	8.59E-03
150	GO:0044209: AMP salvage	8.59E-03
151	GO:0007017: microtubule-based process	8.70E-03
152	GO:0009768: photosynthesis, light harvesting in photosystem I	8.70E-03
153	GO:0006418: tRNA aminoacylation for protein translation	8.70E-03
154	GO:0048527: lateral root development	9.30E-03
155	GO:0061077: chaperone-mediated protein folding	9.59E-03
156	GO:0009959: negative gravitropism	1.07E-02
157	GO:0006828: manganese ion transport	1.07E-02
158	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.07E-02
159	GO:0010405: arabinogalactan protein metabolic process	1.07E-02
160	GO:0000470: maturation of LSU-rRNA	1.07E-02
161	GO:0032973: amino acid export	1.07E-02
162	GO:0006751: glutathione catabolic process	1.07E-02
163	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.07E-02
164	GO:0000741: karyogamy	1.07E-02
165	GO:0009228: thiamine biosynthetic process	1.07E-02
166	GO:0046855: inositol phosphate dephosphorylation	1.07E-02
167	GO:0016554: cytidine to uridine editing	1.07E-02
168	GO:0006655: phosphatidylglycerol biosynthetic process	1.07E-02
169	GO:0009643: photosynthetic acclimation	1.07E-02
170	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.07E-02
171	GO:1902456: regulation of stomatal opening	1.07E-02
172	GO:0009686: gibberellin biosynthetic process	1.15E-02
173	GO:0009409: response to cold	1.18E-02
174	GO:0042026: protein refolding	1.30E-02
175	GO:0006458: 'de novo' protein folding	1.30E-02
176	GO:0017148: negative regulation of translation	1.30E-02
177	GO:2000033: regulation of seed dormancy process	1.30E-02
178	GO:0048280: vesicle fusion with Golgi apparatus	1.30E-02
179	GO:0080086: stamen filament development	1.30E-02
180	GO:0030488: tRNA methylation	1.30E-02
181	GO:0010189: vitamin E biosynthetic process	1.30E-02
182	GO:0008284: positive regulation of cell proliferation	1.36E-02
183	GO:0010114: response to red light	1.45E-02
184	GO:0010103: stomatal complex morphogenesis	1.54E-02
185	GO:0043090: amino acid import	1.54E-02
186	GO:0009769: photosynthesis, light harvesting in photosystem II	1.54E-02
187	GO:0009645: response to low light intensity stimulus	1.54E-02
188	GO:0010444: guard mother cell differentiation	1.54E-02
189	GO:0010161: red light signaling pathway	1.54E-02
190	GO:0030307: positive regulation of cell growth	1.54E-02
191	GO:0070370: cellular heat acclimation	1.54E-02
192	GO:0009790: embryo development	1.56E-02
193	GO:0010305: leaf vascular tissue pattern formation	1.59E-02
194	GO:0005975: carbohydrate metabolic process	1.59E-02
195	GO:0010197: polar nucleus fusion	1.59E-02
196	GO:0009646: response to absence of light	1.71E-02
197	GO:0006855: drug transmembrane transport	1.77E-02
198	GO:0055075: potassium ion homeostasis	1.80E-02
199	GO:0007155: cell adhesion	1.80E-02
200	GO:0048564: photosystem I assembly	1.80E-02
201	GO:0042255: ribosome assembly	1.80E-02
202	GO:0006605: protein targeting	1.80E-02
203	GO:0070413: trehalose metabolism in response to stress	1.80E-02
204	GO:0010078: maintenance of root meristem identity	1.80E-02
205	GO:0052543: callose deposition in cell wall	1.80E-02
206	GO:2000070: regulation of response to water deprivation	1.80E-02
207	GO:0009791: post-embryonic development	1.84E-02
208	GO:0008654: phospholipid biosynthetic process	1.84E-02
209	GO:0040008: regulation of growth	1.87E-02
210	GO:0009664: plant-type cell wall organization	1.94E-02
211	GO:0043562: cellular response to nitrogen levels	2.07E-02
212	GO:0071482: cellular response to light stimulus	2.07E-02
213	GO:0015996: chlorophyll catabolic process	2.07E-02
214	GO:0010100: negative regulation of photomorphogenesis	2.07E-02
215	GO:0006526: arginine biosynthetic process	2.07E-02
216	GO:0001558: regulation of cell growth	2.07E-02
217	GO:0007186: G-protein coupled receptor signaling pathway	2.07E-02
218	GO:0010099: regulation of photomorphogenesis	2.07E-02
219	GO:0010583: response to cyclopentenone	2.10E-02
220	GO:0051603: proteolysis involved in cellular protein catabolic process	2.22E-02
221	GO:0010090: trichome morphogenesis	2.24E-02
222	GO:0055114: oxidation-reduction process	2.32E-02
223	GO:0080144: amino acid homeostasis	2.35E-02
224	GO:0046685: response to arsenic-containing substance	2.35E-02
225	GO:0090333: regulation of stomatal closure	2.35E-02
226	GO:0000902: cell morphogenesis	2.35E-02
227	GO:0048507: meristem development	2.35E-02
228	GO:0046916: cellular transition metal ion homeostasis	2.35E-02
229	GO:0009821: alkaloid biosynthetic process	2.35E-02
230	GO:0009828: plant-type cell wall loosening	2.39E-02
231	GO:0045454: cell redox homeostasis	2.45E-02
232	GO:0006508: proteolysis	2.55E-02
233	GO:0031425: chloroplast RNA processing	2.65E-02
234	GO:0009638: phototropism	2.65E-02
235	GO:0043067: regulation of programmed cell death	2.65E-02
236	GO:0071577: zinc II ion transmembrane transport	2.65E-02
237	GO:0051453: regulation of intracellular pH	2.65E-02
238	GO:0005982: starch metabolic process	2.65E-02
239	GO:1900865: chloroplast RNA modification	2.65E-02
240	GO:0045036: protein targeting to chloroplast	2.96E-02
241	GO:0009641: shade avoidance	2.96E-02
242	GO:0010162: seed dormancy process	2.96E-02
243	GO:0006949: syncytium formation	2.96E-02
244	GO:0006896: Golgi to vacuole transport	2.96E-02
245	GO:0072593: reactive oxygen species metabolic process	3.29E-02
246	GO:0009073: aromatic amino acid family biosynthetic process	3.29E-02
247	GO:0043085: positive regulation of catalytic activity	3.29E-02
248	GO:0000038: very long-chain fatty acid metabolic process	3.29E-02
249	GO:0015770: sucrose transport	3.29E-02
250	GO:0006415: translational termination	3.29E-02
251	GO:0006816: calcium ion transport	3.29E-02
252	GO:0009684: indoleacetic acid biosynthetic process	3.29E-02
253	GO:0018119: peptidyl-cysteine S-nitrosylation	3.29E-02
254	GO:0048229: gametophyte development	3.29E-02
255	GO:0010015: root morphogenesis	3.29E-02
256	GO:0009089: lysine biosynthetic process via diaminopimelate	3.29E-02
257	GO:0016042: lipid catabolic process	3.32E-02
258	GO:0006790: sulfur compound metabolic process	3.62E-02
259	GO:0045037: protein import into chloroplast stroma	3.62E-02
260	GO:0009733: response to auxin	3.65E-02
261	GO:0048481: plant ovule development	3.73E-02
262	GO:0010102: lateral root morphogenesis	3.96E-02
263	GO:0050826: response to freezing	3.96E-02
264	GO:0010628: positive regulation of gene expression	3.96E-02
265	GO:0009718: anthocyanin-containing compound biosynthetic process	3.96E-02
266	GO:0010075: regulation of meristem growth	3.96E-02
267	GO:0010588: cotyledon vascular tissue pattern formation	3.96E-02
268	GO:0030048: actin filament-based movement	3.96E-02
269	GO:0010020: chloroplast fission	4.32E-02
270	GO:0009266: response to temperature stimulus	4.32E-02
271	GO:0019253: reductive pentose-phosphate cycle	4.32E-02
272	GO:0009934: regulation of meristem structural organization	4.32E-02
273	GO:0010143: cutin biosynthetic process	4.32E-02
274	GO:0009058: biosynthetic process	4.66E-02
275	GO:0009901: anther dehiscence	4.69E-02
276	GO:0019853: L-ascorbic acid biosynthetic process	4.69E-02
277	GO:0046854: phosphatidylinositol phosphorylation	4.69E-02
278	GO:0010030: positive regulation of seed germination	4.69E-02
279	GO:0009853: photorespiration	4.71E-02
280	GO:0048366: leaf development	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
2	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0010276: phytol kinase activity	0.00E+00
5	GO:0051060: pullulanase activity	0.00E+00
6	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
7	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
8	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
9	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
10	GO:0005363: maltose transmembrane transporter activity	0.00E+00
11	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
12	GO:0004823: leucine-tRNA ligase activity	0.00E+00
13	GO:0090711: FMN hydrolase activity	0.00E+00
14	GO:0010303: limit dextrinase activity	0.00E+00
15	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
16	GO:0005201: extracellular matrix structural constituent	0.00E+00
17	GO:0004076: biotin synthase activity	0.00E+00
18	GO:0016851: magnesium chelatase activity	3.21E-06
19	GO:0019843: rRNA binding	4.21E-06
20	GO:0045430: chalcone isomerase activity	8.83E-06
21	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.83E-06
22	GO:0031072: heat shock protein binding	4.97E-05
23	GO:0005504: fatty acid binding	1.12E-04
24	GO:0002161: aminoacyl-tRNA editing activity	1.12E-04
25	GO:0005528: FK506 binding	1.20E-04
26	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.78E-04
27	GO:0043023: ribosomal large subunit binding	2.26E-04
28	GO:0009011: starch synthase activity	3.74E-04
29	GO:0016279: protein-lysine N-methyltransferase activity	3.74E-04
30	GO:0043495: protein anchor	3.74E-04
31	GO:0004556: alpha-amylase activity	7.66E-04
32	GO:0004645: phosphorylase activity	9.32E-04
33	GO:0004425: indole-3-glycerol-phosphate synthase activity	9.32E-04
34	GO:0019203: carbohydrate phosphatase activity	9.32E-04
35	GO:1905201: gibberellin transmembrane transporter activity	9.32E-04
36	GO:0004853: uroporphyrinogen decarboxylase activity	9.32E-04
37	GO:0042586: peptide deformylase activity	9.32E-04
38	GO:0008184: glycogen phosphorylase activity	9.32E-04
39	GO:0010313: phytochrome binding	9.32E-04
40	GO:0005080: protein kinase C binding	9.32E-04
41	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	9.32E-04
42	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	9.32E-04
43	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	9.32E-04
44	GO:0051777: ent-kaurenoate oxidase activity	9.32E-04
45	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	9.32E-04
46	GO:0004856: xylulokinase activity	9.32E-04
47	GO:0050308: sugar-phosphatase activity	9.32E-04
48	GO:0050139: nicotinate-N-glucosyltransferase activity	9.32E-04
49	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.01E-03
50	GO:0016168: chlorophyll binding	1.08E-03
51	GO:0019899: enzyme binding	1.29E-03
52	GO:0004033: aldo-keto reductase (NADP) activity	1.61E-03
53	GO:0003727: single-stranded RNA binding	1.91E-03
54	GO:0008493: tetracycline transporter activity	2.03E-03
55	GO:0052833: inositol monophosphate 4-phosphatase activity	2.03E-03
56	GO:0004362: glutathione-disulfide reductase activity	2.03E-03
57	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	2.03E-03
58	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	2.03E-03
59	GO:0019156: isoamylase activity	2.03E-03
60	GO:0052832: inositol monophosphate 3-phosphatase activity	2.03E-03
61	GO:0033201: alpha-1,4-glucan synthase activity	2.03E-03
62	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	2.03E-03
63	GO:0004817: cysteine-tRNA ligase activity	2.03E-03
64	GO:0004512: inositol-3-phosphate synthase activity	2.03E-03
65	GO:0004618: phosphoglycerate kinase activity	2.03E-03
66	GO:0003839: gamma-glutamylcyclotransferase activity	2.03E-03
67	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	2.03E-03
68	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	2.03E-03
69	GO:0004617: phosphoglycerate dehydrogenase activity	2.03E-03
70	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	2.03E-03
71	GO:0016630: protochlorophyllide reductase activity	2.03E-03
72	GO:0008934: inositol monophosphate 1-phosphatase activity	2.03E-03
73	GO:0004047: aminomethyltransferase activity	2.03E-03
74	GO:0047134: protein-disulfide reductase activity	2.12E-03
75	GO:0051082: unfolded protein binding	2.19E-03
76	GO:0004791: thioredoxin-disulfide reductase activity	2.84E-03
77	GO:0015462: ATPase-coupled protein transmembrane transporter activity	3.37E-03
78	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	3.37E-03
79	GO:0004180: carboxypeptidase activity	3.37E-03
80	GO:0004148: dihydrolipoyl dehydrogenase activity	3.37E-03
81	GO:0070402: NADPH binding	3.37E-03
82	GO:0008864: formyltetrahydrofolate deformylase activity	3.37E-03
83	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	3.37E-03
84	GO:0004751: ribose-5-phosphate isomerase activity	3.37E-03
85	GO:0045174: glutathione dehydrogenase (ascorbate) activity	3.37E-03
86	GO:0004373: glycogen (starch) synthase activity	3.37E-03
87	GO:0003913: DNA photolyase activity	3.37E-03
88	GO:0016805: dipeptidase activity	3.37E-03
89	GO:0090729: toxin activity	3.37E-03
90	GO:0048038: quinone binding	3.40E-03
91	GO:0015386: potassium:proton antiporter activity	3.81E-03
92	GO:0047372: acylglycerol lipase activity	3.81E-03
93	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.02E-03
94	GO:0008237: metallopeptidase activity	4.71E-03
95	GO:0003999: adenine phosphoribosyltransferase activity	4.92E-03
96	GO:0009041: uridylate kinase activity	4.92E-03
97	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	4.92E-03
98	GO:0016149: translation release factor activity, codon specific	4.92E-03
99	GO:0003883: CTP synthase activity	4.92E-03
100	GO:0022890: inorganic cation transmembrane transporter activity	4.92E-03
101	GO:0004375: glycine dehydrogenase (decarboxylating) activity	4.92E-03
102	GO:0008266: poly(U) RNA binding	5.64E-03
103	GO:0008083: growth factor activity	5.64E-03
104	GO:0019199: transmembrane receptor protein kinase activity	6.66E-03
105	GO:0004659: prenyltransferase activity	6.66E-03
106	GO:0004045: aminoacyl-tRNA hydrolase activity	6.66E-03
107	GO:0042277: peptide binding	6.66E-03
108	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	6.66E-03
109	GO:0102483: scopolin beta-glucosidase activity	6.75E-03
110	GO:0003723: RNA binding	6.88E-03
111	GO:0031409: pigment binding	7.08E-03
112	GO:0015238: drug transmembrane transporter activity	8.22E-03
113	GO:0016773: phosphotransferase activity, alcohol group as acceptor	8.59E-03
114	GO:0005275: amine transmembrane transporter activity	8.59E-03
115	GO:0016846: carbon-sulfur lyase activity	8.59E-03
116	GO:0003959: NADPH dehydrogenase activity	8.59E-03
117	GO:0042802: identical protein binding	8.81E-03
118	GO:0004176: ATP-dependent peptidase activity	9.59E-03
119	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.07E-02
120	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.07E-02
121	GO:0008200: ion channel inhibitor activity	1.07E-02
122	GO:0016208: AMP binding	1.07E-02
123	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.07E-02
124	GO:2001070: starch binding	1.07E-02
125	GO:0004629: phospholipase C activity	1.07E-02
126	GO:0004605: phosphatidate cytidylyltransferase activity	1.07E-02
127	GO:0015081: sodium ion transmembrane transporter activity	1.07E-02
128	GO:0022891: substrate-specific transmembrane transporter activity	1.15E-02
129	GO:0008422: beta-glucosidase activity	1.17E-02
130	GO:0008195: phosphatidate phosphatase activity	1.30E-02
131	GO:0004435: phosphatidylinositol phospholipase C activity	1.30E-02
132	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.30E-02
133	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.30E-02
134	GO:0004812: aminoacyl-tRNA ligase activity	1.36E-02
135	GO:0004185: serine-type carboxypeptidase activity	1.45E-02
136	GO:0005525: GTP binding	1.79E-02
137	GO:0008173: RNA methyltransferase activity	2.07E-02
138	GO:0046914: transition metal ion binding	2.07E-02
139	GO:0003747: translation release factor activity	2.35E-02
140	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	2.35E-02
141	GO:0005509: calcium ion binding	2.37E-02
142	GO:0016791: phosphatase activity	2.39E-02
143	GO:0005200: structural constituent of cytoskeleton	2.54E-02
144	GO:0008483: transaminase activity	2.54E-02
145	GO:0016844: strictosidine synthase activity	2.65E-02
146	GO:0005384: manganese ion transmembrane transporter activity	2.65E-02
147	GO:0016597: amino acid binding	2.70E-02
148	GO:0008047: enzyme activator activity	2.96E-02
149	GO:0015020: glucuronosyltransferase activity	2.96E-02
150	GO:0008515: sucrose transmembrane transporter activity	3.29E-02
151	GO:0008559: xenobiotic-transporting ATPase activity	3.29E-02
152	GO:0044183: protein binding involved in protein folding	3.29E-02
153	GO:0015035: protein disulfide oxidoreductase activity	3.43E-02
154	GO:0003824: catalytic activity	3.48E-02
155	GO:0008378: galactosyltransferase activity	3.62E-02
156	GO:0000049: tRNA binding	3.62E-02
157	GO:0016788: hydrolase activity, acting on ester bonds	3.93E-02
158	GO:0004089: carbonate dehydratase activity	3.96E-02
159	GO:0015095: magnesium ion transmembrane transporter activity	3.96E-02
160	GO:0004022: alcohol dehydrogenase (NAD) activity	3.96E-02
161	GO:0003725: double-stranded RNA binding	3.96E-02
162	GO:0019888: protein phosphatase regulator activity	3.96E-02
163	GO:0004222: metalloendopeptidase activity	4.11E-02
164	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	4.32E-02
165	GO:0003774: motor activity	4.32E-02
166	GO:0008146: sulfotransferase activity	4.69E-02
167	GO:0051119: sugar transmembrane transporter activity	4.69E-02
168	GO:0003993: acid phosphatase activity	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
3	GO:0009507: chloroplast	5.13E-61
4	GO:0009570: chloroplast stroma	3.61E-36
5	GO:0009535: chloroplast thylakoid membrane	1.07E-27
6	GO:0009941: chloroplast envelope	1.33E-15
7	GO:0009534: chloroplast thylakoid	2.29E-15
8	GO:0009579: thylakoid	1.92E-13
9	GO:0009543: chloroplast thylakoid lumen	7.74E-13
10	GO:0031969: chloroplast membrane	9.11E-10
11	GO:0009654: photosystem II oxygen evolving complex	1.20E-08
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.25E-07
13	GO:0010007: magnesium chelatase complex	6.93E-07
14	GO:0031977: thylakoid lumen	9.62E-07
15	GO:0009508: plastid chromosome	2.12E-06
16	GO:0019898: extrinsic component of membrane	4.41E-06
17	GO:0009295: nucleoid	1.17E-05
18	GO:0010319: stromule	1.24E-04
19	GO:0030095: chloroplast photosystem II	6.96E-04
20	GO:0009547: plastid ribosome	9.32E-04
21	GO:0042651: thylakoid membrane	1.20E-03
22	GO:0000427: plastid-encoded plastid RNA polymerase complex	2.03E-03
23	GO:0009523: photosystem II	3.11E-03
24	GO:0009528: plastid inner membrane	3.37E-03
25	GO:0019897: extrinsic component of plasma membrane	3.37E-03
26	GO:0033281: TAT protein transport complex	3.37E-03
27	GO:0005960: glycine cleavage complex	4.92E-03
28	GO:0030658: transport vesicle membrane	4.92E-03
29	GO:0042646: plastid nucleoid	4.92E-03
30	GO:0015630: microtubule cytoskeleton	4.92E-03
31	GO:0030076: light-harvesting complex	6.34E-03
32	GO:0016021: integral component of membrane	6.62E-03
33	GO:0009527: plastid outer membrane	6.66E-03
34	GO:0009517: PSII associated light-harvesting complex II	6.66E-03
35	GO:0009707: chloroplast outer membrane	7.71E-03
36	GO:0009706: chloroplast inner membrane	8.75E-03
37	GO:0009536: plastid	9.07E-03
38	GO:0009532: plastid stroma	9.59E-03
39	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.07E-02
40	GO:0010287: plastoglobule	1.14E-02
41	GO:0009840: chloroplastic endopeptidase Clp complex	1.30E-02
42	GO:0005840: ribosome	1.40E-02
43	GO:0009533: chloroplast stromal thylakoid	1.54E-02
44	GO:0012507: ER to Golgi transport vesicle membrane	1.80E-02
45	GO:0009501: amyloplast	1.80E-02
46	GO:0016020: membrane	1.91E-02
47	GO:0009539: photosystem II reaction center	2.07E-02
48	GO:0042644: chloroplast nucleoid	2.35E-02
49	GO:0005763: mitochondrial small ribosomal subunit	2.35E-02
50	GO:0045298: tubulin complex	2.35E-02
51	GO:0005615: extracellular space	2.37E-02
52	GO:0030529: intracellular ribonucleoprotein complex	2.86E-02
53	GO:0016459: myosin complex	2.96E-02
54	GO:0000159: protein phosphatase type 2A complex	3.29E-02
55	GO:0032040: small-subunit processome	3.62E-02
56	GO:0000311: plastid large ribosomal subunit	3.62E-02