Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G25700

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010081: regulation of inflorescence meristem growth0.00E+00
2GO:0090071: negative regulation of ribosome biogenesis0.00E+00
3GO:0033231: carbohydrate export0.00E+00
4GO:1903224: regulation of endodermal cell differentiation0.00E+00
5GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
6GO:0080127: fruit septum development0.00E+00
7GO:0007638: mechanosensory behavior0.00E+00
8GO:0032212: positive regulation of telomere maintenance via telomerase0.00E+00
9GO:1905255: regulation of RNA binding transcription factor activity0.00E+00
10GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
11GO:0045184: establishment of protein localization0.00E+00
12GO:0032206: positive regulation of telomere maintenance0.00E+00
13GO:0006907: pinocytosis0.00E+00
14GO:0070125: mitochondrial translational elongation0.00E+00
15GO:0040008: regulation of growth8.20E-06
16GO:0046620: regulation of organ growth1.02E-04
17GO:0009733: response to auxin1.12E-04
18GO:0000373: Group II intron splicing1.84E-04
19GO:1900865: chloroplast RNA modification2.36E-04
20GO:0009734: auxin-activated signaling pathway2.70E-04
21GO:0010582: floral meristem determinacy4.34E-04
22GO:0016123: xanthophyll biosynthetic process4.97E-04
23GO:0016554: cytidine to uridine editing6.87E-04
24GO:0010027: thylakoid membrane organization8.43E-04
25GO:0034757: negative regulation of iron ion transport8.68E-04
26GO:1902334: fructose export from vacuole to cytoplasm8.68E-04
27GO:0042659: regulation of cell fate specification8.68E-04
28GO:0070509: calcium ion import8.68E-04
29GO:0015755: fructose transport8.68E-04
30GO:0006438: valyl-tRNA aminoacylation8.68E-04
31GO:0043266: regulation of potassium ion transport8.68E-04
32GO:0090558: plant epidermis development8.68E-04
33GO:0010480: microsporocyte differentiation8.68E-04
34GO:0010080: regulation of floral meristem growth8.68E-04
35GO:0019478: D-amino acid catabolic process8.68E-04
36GO:0043686: co-translational protein modification8.68E-04
37GO:2000021: regulation of ion homeostasis8.68E-04
38GO:0035987: endodermal cell differentiation8.68E-04
39GO:1902458: positive regulation of stomatal opening8.68E-04
40GO:0015904: tetracycline transport8.68E-04
41GO:0030488: tRNA methylation9.07E-04
42GO:2000070: regulation of response to water deprivation1.44E-03
43GO:0000105: histidine biosynthetic process1.44E-03
44GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.53E-03
45GO:0009416: response to light stimulus1.54E-03
46GO:0009657: plastid organization1.76E-03
47GO:2000123: positive regulation of stomatal complex development1.88E-03
48GO:0010024: phytochromobilin biosynthetic process1.88E-03
49GO:1900871: chloroplast mRNA modification1.88E-03
50GO:0010271: regulation of chlorophyll catabolic process1.88E-03
51GO:0006432: phenylalanyl-tRNA aminoacylation1.88E-03
52GO:0018026: peptidyl-lysine monomethylation1.88E-03
53GO:0001736: establishment of planar polarity1.88E-03
54GO:0080009: mRNA methylation1.88E-03
55GO:0009786: regulation of asymmetric cell division1.88E-03
56GO:0031648: protein destabilization1.88E-03
57GO:0001682: tRNA 5'-leader removal1.88E-03
58GO:1903426: regulation of reactive oxygen species biosynthetic process1.88E-03
59GO:0009958: positive gravitropism2.24E-03
60GO:0009926: auxin polar transport2.70E-03
61GO:0048829: root cap development2.94E-03
62GO:0009641: shade avoidance2.94E-03
63GO:0045910: negative regulation of DNA recombination3.12E-03
64GO:0033591: response to L-ascorbic acid3.12E-03
65GO:0090708: specification of plant organ axis polarity3.12E-03
66GO:0080117: secondary growth3.12E-03
67GO:1902448: positive regulation of shade avoidance3.12E-03
68GO:0080055: low-affinity nitrate transport3.12E-03
69GO:0010022: meristem determinacy3.12E-03
70GO:0051604: protein maturation3.12E-03
71GO:0071398: cellular response to fatty acid3.12E-03
72GO:0030029: actin filament-based process3.12E-03
73GO:0032502: developmental process3.20E-03
74GO:0009750: response to fructose3.41E-03
75GO:0009793: embryo development ending in seed dormancy3.71E-03
76GO:0009725: response to hormone4.46E-03
77GO:0007231: osmosensory signaling pathway4.55E-03
78GO:0051639: actin filament network formation4.55E-03
79GO:0034059: response to anoxia4.55E-03
80GO:0010239: chloroplast mRNA processing4.55E-03
81GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity4.55E-03
82GO:1990019: protein storage vacuole organization4.55E-03
83GO:0010371: regulation of gibberellin biosynthetic process4.55E-03
84GO:0051513: regulation of monopolar cell growth4.55E-03
85GO:0009451: RNA modification4.94E-03
86GO:0010207: photosystem II assembly5.04E-03
87GO:0070588: calcium ion transmembrane transport5.66E-03
88GO:0051764: actin crosslink formation6.16E-03
89GO:0042274: ribosomal small subunit biogenesis6.16E-03
90GO:0009765: photosynthesis, light harvesting6.16E-03
91GO:0030104: water homeostasis6.16E-03
92GO:0033500: carbohydrate homeostasis6.16E-03
93GO:2000038: regulation of stomatal complex development6.16E-03
94GO:0006021: inositol biosynthetic process6.16E-03
95GO:0008295: spermidine biosynthetic process6.16E-03
96GO:0009755: hormone-mediated signaling pathway6.16E-03
97GO:0051017: actin filament bundle assembly7.03E-03
98GO:0005992: trehalose biosynthetic process7.03E-03
99GO:0000160: phosphorelay signal transduction system7.12E-03
100GO:0010438: cellular response to sulfur starvation7.94E-03
101GO:0010158: abaxial cell fate specification7.94E-03
102GO:0080110: sporopollenin biosynthetic process7.94E-03
103GO:0016131: brassinosteroid metabolic process7.94E-03
104GO:0010375: stomatal complex patterning7.94E-03
105GO:0009696: salicylic acid metabolic process7.94E-03
106GO:0045038: protein import into chloroplast thylakoid membrane7.94E-03
107GO:0016120: carotene biosynthetic process7.94E-03
108GO:0048497: maintenance of floral organ identity7.94E-03
109GO:0045487: gibberellin catabolic process7.94E-03
110GO:0031365: N-terminal protein amino acid modification7.94E-03
111GO:0009107: lipoate biosynthetic process7.94E-03
112GO:0010431: seed maturation8.56E-03
113GO:0009867: jasmonic acid mediated signaling pathway9.06E-03
114GO:0009913: epidermal cell differentiation9.88E-03
115GO:1902456: regulation of stomatal opening9.88E-03
116GO:0042793: transcription from plastid promoter9.88E-03
117GO:0010358: leaf shaping9.88E-03
118GO:0048831: regulation of shoot system development9.88E-03
119GO:0003006: developmental process involved in reproduction9.88E-03
120GO:0018258: protein O-linked glycosylation via hydroxyproline9.88E-03
121GO:0010405: arabinogalactan protein metabolic process9.88E-03
122GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.03E-02
123GO:0071215: cellular response to abscisic acid stimulus1.03E-02
124GO:0006631: fatty acid metabolic process1.13E-02
125GO:0009648: photoperiodism1.20E-02
126GO:2000067: regulation of root morphogenesis1.20E-02
127GO:0042372: phylloquinone biosynthetic process1.20E-02
128GO:0017148: negative regulation of translation1.20E-02
129GO:0048509: regulation of meristem development1.20E-02
130GO:0031930: mitochondria-nucleus signaling pathway1.20E-02
131GO:0010019: chloroplast-nucleus signaling pathway1.20E-02
132GO:0016117: carotenoid biosynthetic process1.21E-02
133GO:0070417: cellular response to cold1.21E-02
134GO:0008033: tRNA processing1.31E-02
135GO:0010087: phloem or xylem histogenesis1.31E-02
136GO:0048528: post-embryonic root development1.42E-02
137GO:0010268: brassinosteroid homeostasis1.42E-02
138GO:0010098: suspensor development1.42E-02
139GO:0010050: vegetative phase change1.42E-02
140GO:0048437: floral organ development1.42E-02
141GO:0015693: magnesium ion transport1.42E-02
142GO:0010182: sugar mediated signaling pathway1.42E-02
143GO:0009741: response to brassinosteroid1.42E-02
144GO:0007018: microtubule-based movement1.53E-02
145GO:0010439: regulation of glucosinolate biosynthetic process1.66E-02
146GO:0009850: auxin metabolic process1.66E-02
147GO:0009690: cytokinin metabolic process1.66E-02
148GO:0009819: drought recovery1.66E-02
149GO:0009704: de-etiolation1.66E-02
150GO:0070413: trehalose metabolism in response to stress1.66E-02
151GO:0055075: potassium ion homeostasis1.66E-02
152GO:0009231: riboflavin biosynthetic process1.66E-02
153GO:0000302: response to reactive oxygen species1.76E-02
154GO:0009736: cytokinin-activated signaling pathway1.84E-02
155GO:0071482: cellular response to light stimulus1.91E-02
156GO:0015996: chlorophyll catabolic process1.91E-02
157GO:0007186: G-protein coupled receptor signaling pathway1.91E-02
158GO:0010497: plasmodesmata-mediated intercellular transport1.91E-02
159GO:0032544: plastid translation1.91E-02
160GO:0045892: negative regulation of transcription, DNA-templated2.08E-02
161GO:0006464: cellular protein modification process2.13E-02
162GO:0009828: plant-type cell wall loosening2.13E-02
163GO:0051865: protein autoubiquitination2.17E-02
164GO:0006098: pentose-phosphate shunt2.17E-02
165GO:0048507: meristem development2.17E-02
166GO:0009056: catabolic process2.17E-02
167GO:0009638: phototropism2.45E-02
168GO:0042761: very long-chain fatty acid biosynthetic process2.45E-02
169GO:0006779: porphyrin-containing compound biosynthetic process2.45E-02
170GO:0000723: telomere maintenance2.45E-02
171GO:2000280: regulation of root development2.45E-02
172GO:0009098: leucine biosynthetic process2.45E-02
173GO:0016571: histone methylation2.45E-02
174GO:0010018: far-red light signaling pathway2.45E-02
175GO:0016573: histone acetylation2.45E-02
176GO:0006949: syncytium formation2.73E-02
177GO:0009299: mRNA transcription2.73E-02
178GO:0009870: defense response signaling pathway, resistance gene-dependent2.73E-02
179GO:0006535: cysteine biosynthetic process from serine2.73E-02
180GO:0006782: protoporphyrinogen IX biosynthetic process2.73E-02
181GO:0006995: cellular response to nitrogen starvation2.73E-02
182GO:0006298: mismatch repair2.73E-02
183GO:0016441: posttranscriptional gene silencing2.73E-02
184GO:0006816: calcium ion transport3.03E-02
185GO:0009073: aromatic amino acid family biosynthetic process3.03E-02
186GO:0009682: induced systemic resistance3.03E-02
187GO:0006415: translational termination3.03E-02
188GO:0048229: gametophyte development3.03E-02
189GO:0048765: root hair cell differentiation3.03E-02
190GO:0009826: unidimensional cell growth3.07E-02
191GO:0009742: brassinosteroid mediated signaling pathway3.09E-02
192GO:0009658: chloroplast organization3.25E-02
193GO:0006790: sulfur compound metabolic process3.34E-02
194GO:0005983: starch catabolic process3.34E-02
195GO:0010105: negative regulation of ethylene-activated signaling pathway3.34E-02
196GO:0045037: protein import into chloroplast stroma3.34E-02
197GO:0010311: lateral root formation3.50E-02
198GO:0006094: gluconeogenesis3.66E-02
199GO:0010588: cotyledon vascular tissue pattern formation3.66E-02
200GO:0010102: lateral root morphogenesis3.66E-02
201GO:0009785: blue light signaling pathway3.66E-02
202GO:0009691: cytokinin biosynthetic process3.66E-02
203GO:0010075: regulation of meristem growth3.66E-02
204GO:0048467: gynoecium development3.98E-02
205GO:0010020: chloroplast fission3.98E-02
206GO:0009266: response to temperature stimulus3.98E-02
207GO:0009934: regulation of meristem structural organization3.98E-02
208GO:0006865: amino acid transport4.03E-02
209GO:0009845: seed germination4.19E-02
210GO:0090351: seedling development4.32E-02
211GO:0046854: phosphatidylinositol phosphorylation4.32E-02
212GO:0000162: tryptophan biosynthetic process4.67E-02
213GO:0010025: wax biosynthetic process4.67E-02
214GO:0042753: positive regulation of circadian rhythm4.67E-02
215GO:0006833: water transport4.67E-02
RankGO TermAdjusted P value
1GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity0.00E+00
2GO:0052834: inositol monophosphate phosphatase activity0.00E+00
3GO:0019144: ADP-sugar diphosphatase activity0.00E+00
4GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity0.00E+00
5GO:0071633: dihydroceramidase activity0.00E+00
6GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
7GO:0045435: lycopene epsilon cyclase activity0.00E+00
8GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
9GO:0004401: histidinol-phosphatase activity0.00E+00
10GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor0.00E+00
11GO:0047793: cycloeucalenol cycloisomerase activity0.00E+00
12GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
13GO:0015284: fructose uniporter activity0.00E+00
14GO:0008805: carbon-monoxide oxygenase activity3.12E-05
15GO:0017118: lipoyltransferase activity3.12E-05
16GO:0001872: (1->3)-beta-D-glucan binding2.01E-04
17GO:0050139: nicotinate-N-glucosyltransferase activity8.68E-04
18GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity8.68E-04
19GO:0047259: glucomannan 4-beta-mannosyltransferase activity8.68E-04
20GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity8.68E-04
21GO:0005227: calcium activated cation channel activity8.68E-04
22GO:0080042: ADP-glucose pyrophosphohydrolase activity8.68E-04
23GO:0019203: carbohydrate phosphatase activity8.68E-04
24GO:0050308: sugar-phosphatase activity8.68E-04
25GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity8.68E-04
26GO:0008395: steroid hydroxylase activity8.68E-04
27GO:0004832: valine-tRNA ligase activity8.68E-04
28GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity8.68E-04
29GO:0042586: peptide deformylase activity8.68E-04
30GO:0052381: tRNA dimethylallyltransferase activity8.68E-04
31GO:0010347: L-galactose-1-phosphate phosphatase activity8.68E-04
32GO:0010012: steroid 22-alpha hydroxylase activity8.68E-04
33GO:0003723: RNA binding1.18E-03
34GO:0016415: octanoyltransferase activity1.88E-03
35GO:0004766: spermidine synthase activity1.88E-03
36GO:0052832: inositol monophosphate 3-phosphatase activity1.88E-03
37GO:0005353: fructose transmembrane transporter activity1.88E-03
38GO:0008934: inositol monophosphate 1-phosphatase activity1.88E-03
39GO:0008493: tetracycline transporter activity1.88E-03
40GO:0052833: inositol monophosphate 4-phosphatase activity1.88E-03
41GO:0004826: phenylalanine-tRNA ligase activity1.88E-03
42GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.88E-03
43GO:0050736: O-malonyltransferase activity1.88E-03
44GO:0009884: cytokinin receptor activity1.88E-03
45GO:0050017: L-3-cyanoalanine synthase activity1.88E-03
46GO:0004103: choline kinase activity1.88E-03
47GO:0003852: 2-isopropylmalate synthase activity1.88E-03
48GO:0045543: gibberellin 2-beta-dioxygenase activity1.88E-03
49GO:0080041: ADP-ribose pyrophosphohydrolase activity1.88E-03
50GO:0043425: bHLH transcription factor binding1.88E-03
51GO:0010296: prenylcysteine methylesterase activity1.88E-03
52GO:0004805: trehalose-phosphatase activity2.94E-03
53GO:0003913: DNA photolyase activity3.12E-03
54GO:0004148: dihydrolipoyl dehydrogenase activity3.12E-03
55GO:0005034: osmosensor activity3.12E-03
56GO:0080054: low-affinity nitrate transmembrane transporter activity3.12E-03
57GO:0004519: endonuclease activity4.04E-03
58GO:0031072: heat shock protein binding4.46E-03
59GO:0005262: calcium channel activity4.46E-03
60GO:0043047: single-stranded telomeric DNA binding4.55E-03
61GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity4.55E-03
62GO:0016149: translation release factor activity, codon specific4.55E-03
63GO:0043023: ribosomal large subunit binding4.55E-03
64GO:0080031: methyl salicylate esterase activity4.55E-03
65GO:0004300: enoyl-CoA hydratase activity4.55E-03
66GO:0010011: auxin binding6.16E-03
67GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed6.16E-03
68GO:0010328: auxin influx transmembrane transporter activity6.16E-03
69GO:0019199: transmembrane receptor protein kinase activity6.16E-03
70GO:0016279: protein-lysine N-methyltransferase activity6.16E-03
71GO:0008725: DNA-3-methyladenine glycosylase activity7.94E-03
72GO:0005471: ATP:ADP antiporter activity7.94E-03
73GO:0070696: transmembrane receptor protein serine/threonine kinase binding7.94E-03
74GO:0030983: mismatched DNA binding9.88E-03
75GO:0080030: methyl indole-3-acetate esterase activity9.88E-03
76GO:1990714: hydroxyproline O-galactosyltransferase activity9.88E-03
77GO:0004332: fructose-bisphosphate aldolase activity9.88E-03
78GO:0004526: ribonuclease P activity9.88E-03
79GO:0004709: MAP kinase kinase kinase activity9.88E-03
80GO:0016208: AMP binding9.88E-03
81GO:0004130: cytochrome-c peroxidase activity9.88E-03
82GO:0016688: L-ascorbate peroxidase activity9.88E-03
83GO:2001070: starch binding9.88E-03
84GO:0004124: cysteine synthase activity1.20E-02
85GO:0051753: mannan synthase activity1.20E-02
86GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.20E-02
87GO:0016832: aldehyde-lyase activity1.20E-02
88GO:0019900: kinase binding1.20E-02
89GO:0043621: protein self-association1.39E-02
90GO:0042162: telomeric DNA binding1.42E-02
91GO:0009881: photoreceptor activity1.42E-02
92GO:0003724: RNA helicase activity1.91E-02
93GO:0008173: RNA methyltransferase activity1.91E-02
94GO:0000156: phosphorelay response regulator activity2.00E-02
95GO:0051015: actin filament binding2.00E-02
96GO:0003777: microtubule motor activity2.09E-02
97GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.09E-02
98GO:0008138: protein tyrosine/serine/threonine phosphatase activity2.17E-02
99GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity2.17E-02
100GO:0003747: translation release factor activity2.17E-02
101GO:0004871: signal transducer activity2.19E-02
102GO:0005200: structural constituent of cytoskeleton2.27E-02
103GO:0004673: protein histidine kinase activity2.73E-02
104GO:0030247: polysaccharide binding3.01E-02
105GO:0008236: serine-type peptidase activity3.17E-02
106GO:0016788: hydrolase activity, acting on ester bonds3.34E-02
107GO:0000049: tRNA binding3.34E-02
108GO:0005096: GTPase activator activity3.50E-02
109GO:0015266: protein channel activity3.66E-02
110GO:0015095: magnesium ion transmembrane transporter activity3.66E-02
111GO:0000155: phosphorelay sensor kinase activity3.66E-02
112GO:0050897: cobalt ion binding3.85E-02
113GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.93E-02
114GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.98E-02
115GO:0008266: poly(U) RNA binding3.98E-02
116GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.21E-02
117GO:0008061: chitin binding4.32E-02
118GO:0003712: transcription cofactor activity4.32E-02
119GO:0008146: sulfotransferase activity4.32E-02
120GO:0051119: sugar transmembrane transporter activity4.32E-02
121GO:0102336: 3-oxo-arachidoyl-CoA synthase activity4.67E-02
122GO:0102337: 3-oxo-cerotoyl-CoA synthase activity4.67E-02
123GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity4.67E-02
RankGO TermAdjusted P value
1GO:0009537: proplastid0.00E+00
2GO:0000408: EKC/KEOPS complex0.00E+00
3GO:0009349: riboflavin synthase complex0.00E+00
4GO:0035452: extrinsic component of plastid membrane0.00E+00
5GO:0009507: chloroplast6.78E-09
6GO:0009508: plastid chromosome5.16E-04
7GO:0009570: chloroplast stroma1.08E-03
8GO:0009986: cell surface1.16E-03
9GO:0000427: plastid-encoded plastid RNA polymerase complex1.88E-03
10GO:0009513: etioplast1.88E-03
11GO:0005697: telomerase holoenzyme complex1.88E-03
12GO:0009941: chloroplast envelope2.26E-03
13GO:0009528: plastid inner membrane3.12E-03
14GO:0009509: chromoplast3.12E-03
15GO:0030139: endocytic vesicle3.12E-03
16GO:0009295: nucleoid4.08E-03
17GO:0032585: multivesicular body membrane4.55E-03
18GO:0032432: actin filament bundle4.55E-03
19GO:0009527: plastid outer membrane6.16E-03
20GO:0009526: plastid envelope6.16E-03
21GO:0055035: plastid thylakoid membrane7.94E-03
22GO:0005886: plasma membrane9.61E-03
23GO:0015629: actin cytoskeleton1.03E-02
24GO:0005871: kinesin complex1.21E-02
25GO:0042807: central vacuole1.42E-02
26GO:0005759: mitochondrial matrix1.47E-02
27GO:0031969: chloroplast membrane1.49E-02
28GO:0031305: integral component of mitochondrial inner membrane1.66E-02
29GO:0048226: Casparian strip1.66E-02
30GO:0009501: amyloplast1.66E-02
31GO:0009534: chloroplast thylakoid1.74E-02
32GO:0000326: protein storage vacuole1.91E-02
33GO:0000784: nuclear chromosome, telomeric region1.91E-02
34GO:0010494: cytoplasmic stress granule2.17E-02
35GO:0046658: anchored component of plasma membrane2.58E-02
36GO:0005884: actin filament3.03E-02
37GO:0009707: chloroplast outer membrane3.33E-02
38GO:0005578: proteinaceous extracellular matrix3.66E-02
39GO:0030095: chloroplast photosystem II3.98E-02
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Gene type



Gene DE type