Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G25610

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0043048: dolichyl monophosphate biosynthetic process0.00E+00
2GO:0032260: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance0.00E+00
3GO:0090359: negative regulation of abscisic acid biosynthetic process0.00E+00
4GO:0015690: aluminum cation transport0.00E+00
5GO:1900367: positive regulation of defense response to insect0.00E+00
6GO:0002764: immune response-regulating signaling pathway0.00E+00
7GO:0006987: activation of signaling protein activity involved in unfolded protein response0.00E+00
8GO:0033587: shikimate biosynthetic process0.00E+00
9GO:0045730: respiratory burst0.00E+00
10GO:0010324: membrane invagination0.00E+00
11GO:0032499: detection of peptidoglycan0.00E+00
12GO:0002752: cell surface pattern recognition receptor signaling pathway0.00E+00
13GO:0071327: cellular response to trehalose stimulus0.00E+00
14GO:0006468: protein phosphorylation6.04E-09
15GO:0010200: response to chitin5.30E-07
16GO:0060548: negative regulation of cell death1.60E-06
17GO:0009697: salicylic acid biosynthetic process3.57E-06
18GO:0010150: leaf senescence3.20E-05
19GO:0031348: negative regulation of defense response3.38E-05
20GO:0006952: defense response3.71E-05
21GO:0046777: protein autophosphorylation4.19E-05
22GO:0042742: defense response to bacterium9.21E-05
23GO:0006979: response to oxidative stress9.49E-05
24GO:0009751: response to salicylic acid1.09E-04
25GO:0045227: capsule polysaccharide biosynthetic process1.35E-04
26GO:0009737: response to abscisic acid1.35E-04
27GO:0033358: UDP-L-arabinose biosynthetic process1.35E-04
28GO:0080142: regulation of salicylic acid biosynthetic process1.35E-04
29GO:0009611: response to wounding1.49E-04
30GO:0010225: response to UV-C2.07E-04
31GO:0009643: photosynthetic acclimation2.93E-04
32GO:0009620: response to fungus3.25E-04
33GO:0071456: cellular response to hypoxia4.49E-04
34GO:0051938: L-glutamate import4.92E-04
35GO:0015760: glucose-6-phosphate transport4.92E-04
36GO:0046256: 2,4,6-trinitrotoluene catabolic process4.92E-04
37GO:0019567: arabinose biosynthetic process4.92E-04
38GO:0015969: guanosine tetraphosphate metabolic process4.92E-04
39GO:0099132: ATP hydrolysis coupled cation transmembrane transport4.92E-04
40GO:0010421: hydrogen peroxide-mediated programmed cell death4.92E-04
41GO:1901183: positive regulation of camalexin biosynthetic process4.92E-04
42GO:0033306: phytol metabolic process4.92E-04
43GO:0009270: response to humidity4.92E-04
44GO:0032491: detection of molecule of fungal origin4.92E-04
45GO:0042759: long-chain fatty acid biosynthetic process4.92E-04
46GO:0048508: embryonic meristem development4.92E-04
47GO:1900056: negative regulation of leaf senescence5.03E-04
48GO:0042391: regulation of membrane potential6.87E-04
49GO:0051707: response to other organism7.26E-04
50GO:2000031: regulation of salicylic acid mediated signaling pathway7.64E-04
51GO:0009646: response to absence of light8.29E-04
52GO:0009749: response to glucose9.06E-04
53GO:0006098: pentose-phosphate shunt9.13E-04
54GO:0010112: regulation of systemic acquired resistance9.13E-04
55GO:0007165: signal transduction1.01E-03
56GO:0015802: basic amino acid transport1.06E-03
57GO:0010618: aerenchyma formation1.06E-03
58GO:0006527: arginine catabolic process1.06E-03
59GO:0080181: lateral root branching1.06E-03
60GO:0010115: regulation of abscisic acid biosynthetic process1.06E-03
61GO:0015865: purine nucleotide transport1.06E-03
62GO:0010271: regulation of chlorophyll catabolic process1.06E-03
63GO:0019725: cellular homeostasis1.06E-03
64GO:0044419: interspecies interaction between organisms1.06E-03
65GO:0009945: radial axis specification1.06E-03
66GO:0015712: hexose phosphate transport1.06E-03
67GO:0051258: protein polymerization1.06E-03
68GO:0009446: putrescine biosynthetic process1.06E-03
69GO:0043091: L-arginine import1.06E-03
70GO:0015914: phospholipid transport1.06E-03
71GO:0080151: positive regulation of salicylic acid mediated signaling pathway1.06E-03
72GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.08E-03
73GO:0006486: protein glycosylation1.14E-03
74GO:0006470: protein dephosphorylation1.29E-03
75GO:0009617: response to bacterium1.40E-03
76GO:0009626: plant-type hypersensitive response1.62E-03
77GO:0009816: defense response to bacterium, incompatible interaction1.69E-03
78GO:0048281: inflorescence morphogenesis1.73E-03
79GO:0015714: phosphoenolpyruvate transport1.73E-03
80GO:0015695: organic cation transport1.73E-03
81GO:1900055: regulation of leaf senescence1.73E-03
82GO:0006954: inflammatory response1.73E-03
83GO:0034051: negative regulation of plant-type hypersensitive response1.73E-03
84GO:0016045: detection of bacterium1.73E-03
85GO:0010498: proteasomal protein catabolic process1.73E-03
86GO:1900140: regulation of seedling development1.73E-03
87GO:0010359: regulation of anion channel activity1.73E-03
88GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway1.73E-03
89GO:0035436: triose phosphate transmembrane transport1.73E-03
90GO:0045793: positive regulation of cell size1.73E-03
91GO:0010186: positive regulation of cellular defense response1.73E-03
92GO:0055046: microgametogenesis1.88E-03
93GO:0009753: response to jasmonic acid2.08E-03
94GO:0009266: response to temperature stimulus2.13E-03
95GO:0009225: nucleotide-sugar metabolic process2.38E-03
96GO:0070588: calcium ion transmembrane transport2.38E-03
97GO:0010306: rhamnogalacturonan II biosynthetic process2.51E-03
98GO:0046902: regulation of mitochondrial membrane permeability2.51E-03
99GO:0015696: ammonium transport2.51E-03
100GO:0072583: clathrin-dependent endocytosis2.51E-03
101GO:0071323: cellular response to chitin2.51E-03
102GO:0002679: respiratory burst involved in defense response2.51E-03
103GO:0046513: ceramide biosynthetic process2.51E-03
104GO:0046836: glycolipid transport2.51E-03
105GO:0050832: defense response to fungus2.86E-03
106GO:2000377: regulation of reactive oxygen species metabolic process2.95E-03
107GO:0016567: protein ubiquitination3.06E-03
108GO:0010483: pollen tube reception3.38E-03
109GO:0009652: thigmotropism3.38E-03
110GO:0010107: potassium ion import3.38E-03
111GO:0072488: ammonium transmembrane transport3.38E-03
112GO:0071219: cellular response to molecule of bacterial origin3.38E-03
113GO:0010508: positive regulation of autophagy3.38E-03
114GO:0015713: phosphoglycerate transport3.38E-03
115GO:0008295: spermidine biosynthetic process3.38E-03
116GO:0009694: jasmonic acid metabolic process3.38E-03
117GO:1901141: regulation of lignin biosynthetic process3.38E-03
118GO:0010109: regulation of photosynthesis3.38E-03
119GO:0009744: response to sucrose4.14E-03
120GO:0009625: response to insect4.28E-03
121GO:0006012: galactose metabolic process4.28E-03
122GO:0018344: protein geranylgeranylation4.33E-03
123GO:0034052: positive regulation of plant-type hypersensitive response4.33E-03
124GO:0009164: nucleoside catabolic process4.33E-03
125GO:0009738: abscisic acid-activated signaling pathway5.27E-03
126GO:1900425: negative regulation of defense response to bacterium5.37E-03
127GO:0006596: polyamine biosynthetic process5.37E-03
128GO:0006574: valine catabolic process5.37E-03
129GO:0002238: response to molecule of fungal origin5.37E-03
130GO:0018258: protein O-linked glycosylation via hydroxyproline5.37E-03
131GO:0009759: indole glucosinolate biosynthetic process5.37E-03
132GO:0010942: positive regulation of cell death5.37E-03
133GO:0010405: arabinogalactan protein metabolic process5.37E-03
134GO:0010118: stomatal movement5.46E-03
135GO:0007166: cell surface receptor signaling pathway5.54E-03
136GO:0009409: response to cold5.92E-03
137GO:0009809: lignin biosynthetic process6.06E-03
138GO:0035556: intracellular signal transduction6.25E-03
139GO:0010310: regulation of hydrogen peroxide metabolic process6.48E-03
140GO:2000067: regulation of root morphogenesis6.48E-03
141GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response6.48E-03
142GO:0042372: phylloquinone biosynthetic process6.48E-03
143GO:0009612: response to mechanical stimulus6.48E-03
144GO:0009942: longitudinal axis specification6.48E-03
145GO:0009094: L-phenylalanine biosynthetic process6.48E-03
146GO:0010555: response to mannitol6.48E-03
147GO:0010193: response to ozone7.28E-03
148GO:0043090: amino acid import7.66E-03
149GO:0071446: cellular response to salicylic acid stimulus7.66E-03
150GO:0050829: defense response to Gram-negative bacterium7.66E-03
151GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway7.66E-03
152GO:0010161: red light signaling pathway7.66E-03
153GO:0098869: cellular oxidant detoxification7.66E-03
154GO:0030091: protein repair8.92E-03
155GO:0009787: regulation of abscisic acid-activated signaling pathway8.92E-03
156GO:0009819: drought recovery8.92E-03
157GO:0043068: positive regulation of programmed cell death8.92E-03
158GO:0006904: vesicle docking involved in exocytosis9.40E-03
159GO:0009624: response to nematode9.51E-03
160GO:0010099: regulation of photomorphogenesis1.03E-02
161GO:0010120: camalexin biosynthetic process1.03E-02
162GO:0007186: G-protein coupled receptor signaling pathway1.03E-02
163GO:0010204: defense response signaling pathway, resistance gene-independent1.03E-02
164GO:0030968: endoplasmic reticulum unfolded protein response1.03E-02
165GO:0009808: lignin metabolic process1.03E-02
166GO:0009788: negative regulation of abscisic acid-activated signaling pathway1.12E-02
167GO:0051865: protein autoubiquitination1.17E-02
168GO:0009051: pentose-phosphate shunt, oxidative branch1.17E-02
169GO:0090333: regulation of stomatal closure1.17E-02
170GO:0046916: cellular transition metal ion homeostasis1.17E-02
171GO:0019432: triglyceride biosynthetic process1.17E-02
172GO:0009056: catabolic process1.17E-02
173GO:0009627: systemic acquired resistance1.18E-02
174GO:0080167: response to karrikin1.22E-02
175GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.28E-02
176GO:0048354: mucilage biosynthetic process involved in seed coat development1.31E-02
177GO:0010380: regulation of chlorophyll biosynthetic process1.31E-02
178GO:0008202: steroid metabolic process1.31E-02
179GO:1900426: positive regulation of defense response to bacterium1.31E-02
180GO:0007064: mitotic sister chromatid cohesion1.46E-02
181GO:0009832: plant-type cell wall biogenesis1.46E-02
182GO:0009407: toxin catabolic process1.53E-02
183GO:0010119: regulation of stomatal movement1.60E-02
184GO:0007568: aging1.60E-02
185GO:0072593: reactive oxygen species metabolic process1.62E-02
186GO:0009750: response to fructose1.62E-02
187GO:0009867: jasmonic acid mediated signaling pathway1.76E-02
188GO:0045087: innate immune response1.76E-02
189GO:0008361: regulation of cell size1.79E-02
190GO:0012501: programmed cell death1.79E-02
191GO:0002213: defense response to insect1.79E-02
192GO:0010105: negative regulation of ethylene-activated signaling pathway1.79E-02
193GO:0006006: glucose metabolic process1.96E-02
194GO:0006887: exocytosis2.09E-02
195GO:0009414: response to water deprivation2.10E-02
196GO:0034605: cellular response to heat2.13E-02
197GO:0002237: response to molecule of bacterial origin2.13E-02
198GO:0009408: response to heat2.19E-02
199GO:0009969: xyloglucan biosynthetic process2.31E-02
200GO:0010167: response to nitrate2.31E-02
201GO:0046854: phosphatidylinositol phosphorylation2.31E-02
202GO:0009636: response to toxic substance2.56E-02
203GO:0006855: drug transmembrane transport2.65E-02
204GO:0009863: salicylic acid mediated signaling pathway2.69E-02
205GO:0031347: regulation of defense response2.75E-02
206GO:0006874: cellular calcium ion homeostasis2.89E-02
207GO:0009695: jasmonic acid biosynthetic process2.89E-02
208GO:0003333: amino acid transmembrane transport3.09E-02
209GO:0048511: rhythmic process3.09E-02
210GO:0010017: red or far-red light signaling pathway3.29E-02
211GO:0016226: iron-sulfur cluster assembly3.29E-02
212GO:2000022: regulation of jasmonic acid mediated signaling pathway3.29E-02
213GO:0006970: response to osmotic stress3.62E-02
214GO:0019722: calcium-mediated signaling3.72E-02
215GO:0009561: megagametogenesis3.72E-02
216GO:0070417: cellular response to cold3.94E-02
217GO:0042631: cellular response to water deprivation4.16E-02
218GO:0000271: polysaccharide biosynthetic process4.16E-02
219GO:0000413: protein peptidyl-prolyl isomerization4.16E-02
220GO:0006885: regulation of pH4.39E-02
221GO:0045489: pectin biosynthetic process4.39E-02
222GO:0009651: response to salt stress4.57E-02
223GO:0009742: brassinosteroid mediated signaling pathway4.61E-02
224GO:0008654: phospholipid biosynthetic process4.85E-02
RankGO TermAdjusted P value
1GO:0080131: hydroxyjasmonate sulfotransferase activity0.00E+00
2GO:2001080: chitosan binding0.00E+00
3GO:0004168: dolichol kinase activity0.00E+00
4GO:0004674: protein serine/threonine kinase activity6.00E-11
5GO:0016301: kinase activity1.65E-10
6GO:0070696: transmembrane receptor protein serine/threonine kinase binding3.57E-06
7GO:0005524: ATP binding4.25E-06
8GO:0004672: protein kinase activity1.06E-04
9GO:0019199: transmembrane receptor protein kinase activity1.35E-04
10GO:0050373: UDP-arabinose 4-epimerase activity1.35E-04
11GO:0030553: cGMP binding2.28E-04
12GO:0030552: cAMP binding2.28E-04
13GO:0005509: calcium ion binding2.57E-04
14GO:0005216: ion channel activity3.51E-04
15GO:0003978: UDP-glucose 4-epimerase activity3.92E-04
16GO:0032050: clathrin heavy chain binding4.92E-04
17GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity4.92E-04
18GO:0004662: CAAX-protein geranylgeranyltransferase activity4.92E-04
19GO:0008909: isochorismate synthase activity4.92E-04
20GO:0019707: protein-cysteine S-acyltransferase activity4.92E-04
21GO:0008792: arginine decarboxylase activity4.92E-04
22GO:0031127: alpha-(1,2)-fucosyltransferase activity4.92E-04
23GO:0004714: transmembrane receptor protein tyrosine kinase activity6.27E-04
24GO:0030551: cyclic nucleotide binding6.87E-04
25GO:0005249: voltage-gated potassium channel activity6.87E-04
26GO:0004842: ubiquitin-protein transferase activity8.38E-04
27GO:0019901: protein kinase binding9.06E-04
28GO:0015152: glucose-6-phosphate transmembrane transporter activity1.06E-03
29GO:0050403: trans-zeatin O-beta-D-glucosyltransferase activity1.06E-03
30GO:0050502: cis-zeatin O-beta-D-glucosyltransferase activity1.06E-03
31GO:0001671: ATPase activator activity1.06E-03
32GO:0008728: GTP diphosphokinase activity1.06E-03
33GO:0048531: beta-1,3-galactosyltransferase activity1.06E-03
34GO:0050291: sphingosine N-acyltransferase activity1.06E-03
35GO:0047364: desulfoglucosinolate sulfotransferase activity1.06E-03
36GO:0008171: O-methyltransferase activity1.25E-03
37GO:0008559: xenobiotic-transporting ATPase activity1.45E-03
38GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity1.73E-03
39GO:0042409: caffeoyl-CoA O-methyltransferase activity1.73E-03
40GO:0046423: allene-oxide cyclase activity1.73E-03
41GO:0031683: G-protein beta/gamma-subunit complex binding1.73E-03
42GO:0071917: triose-phosphate transmembrane transporter activity1.73E-03
43GO:0001664: G-protein coupled receptor binding1.73E-03
44GO:0005388: calcium-transporting ATPase activity1.88E-03
45GO:0008146: sulfotransferase activity2.38E-03
46GO:0015189: L-lysine transmembrane transporter activity2.51E-03
47GO:0017089: glycolipid transporter activity2.51E-03
48GO:0015181: arginine transmembrane transporter activity2.51E-03
49GO:0043424: protein histidine kinase binding3.26E-03
50GO:0004345: glucose-6-phosphate dehydrogenase activity3.38E-03
51GO:0004664: prephenate dehydratase activity3.38E-03
52GO:0051861: glycolipid binding3.38E-03
53GO:0005313: L-glutamate transmembrane transporter activity3.38E-03
54GO:0015120: phosphoglycerate transmembrane transporter activity3.38E-03
55GO:0047769: arogenate dehydratase activity3.38E-03
56GO:0033612: receptor serine/threonine kinase binding3.58E-03
57GO:0019706: protein-cysteine S-palmitoyltransferase activity3.58E-03
58GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.06E-03
59GO:0005516: calmodulin binding4.28E-03
60GO:0005496: steroid binding4.33E-03
61GO:0047631: ADP-ribose diphosphatase activity4.33E-03
62GO:0005471: ATP:ADP antiporter activity4.33E-03
63GO:0004722: protein serine/threonine phosphatase activity5.23E-03
64GO:0004605: phosphatidate cytidylyltransferase activity5.37E-03
65GO:1990714: hydroxyproline O-galactosyltransferase activity5.37E-03
66GO:0000210: NAD+ diphosphatase activity5.37E-03
67GO:0035252: UDP-xylosyltransferase activity5.37E-03
68GO:0008519: ammonium transmembrane transporter activity5.37E-03
69GO:0046872: metal ion binding6.31E-03
70GO:0033743: peptide-methionine (R)-S-oxide reductase activity6.48E-03
71GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.48E-03
72GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides6.48E-03
73GO:0003950: NAD+ ADP-ribosyltransferase activity6.48E-03
74GO:0004144: diacylglycerol O-acyltransferase activity6.48E-03
75GO:0004012: phospholipid-translocating ATPase activity6.48E-03
76GO:0005261: cation channel activity6.48E-03
77GO:0019900: kinase binding6.48E-03
78GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity7.66E-03
79GO:0043295: glutathione binding7.66E-03
80GO:0004197: cysteine-type endopeptidase activity7.79E-03
81GO:0005544: calcium-dependent phospholipid binding8.92E-03
82GO:0004033: aldo-keto reductase (NADP) activity8.92E-03
83GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity9.40E-03
84GO:0030246: carbohydrate binding1.00E-02
85GO:0043531: ADP binding1.01E-02
86GO:0008142: oxysterol binding1.03E-02
87GO:0008271: secondary active sulfate transmembrane transporter activity1.03E-02
88GO:0004430: 1-phosphatidylinositol 4-kinase activity1.03E-02
89GO:0008417: fucosyltransferase activity1.17E-02
90GO:0016758: transferase activity, transferring hexosyl groups1.23E-02
91GO:0004721: phosphoprotein phosphatase activity1.25E-02
92GO:0004806: triglyceride lipase activity1.25E-02
93GO:0015174: basic amino acid transmembrane transporter activity1.31E-02
94GO:0015020: glucuronosyltransferase activity1.46E-02
95GO:0004713: protein tyrosine kinase activity1.46E-02
96GO:0015238: drug transmembrane transporter activity1.46E-02
97GO:0004568: chitinase activity1.46E-02
98GO:0005515: protein binding1.52E-02
99GO:0015116: sulfate transmembrane transporter activity1.79E-02
100GO:0008378: galactosyltransferase activity1.79E-02
101GO:0004521: endoribonuclease activity1.79E-02
102GO:0015297: antiporter activity1.80E-02
103GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.96E-02
104GO:0005315: inorganic phosphate transmembrane transporter activity1.96E-02
105GO:0031072: heat shock protein binding1.96E-02
106GO:0050661: NADP binding2.01E-02
107GO:0004364: glutathione transferase activity2.18E-02
108GO:0008061: chitin binding2.31E-02
109GO:0004970: ionotropic glutamate receptor activity2.31E-02
110GO:0005217: intracellular ligand-gated ion channel activity2.31E-02
111GO:0004190: aspartic-type endopeptidase activity2.31E-02
112GO:0015293: symporter activity2.56E-02
113GO:0003954: NADH dehydrogenase activity2.69E-02
114GO:0051087: chaperone binding2.89E-02
115GO:0004707: MAP kinase activity3.09E-02
116GO:0016298: lipase activity3.17E-02
117GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.29E-02
118GO:0015171: amino acid transmembrane transporter activity3.39E-02
119GO:0004499: N,N-dimethylaniline monooxygenase activity3.72E-02
120GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.74E-02
121GO:0005451: monovalent cation:proton antiporter activity4.16E-02
122GO:0015299: solute:proton antiporter activity4.62E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane1.19E-16
2GO:0016021: integral component of membrane1.66E-08
3GO:0005901: caveola1.06E-05
4GO:0005953: CAAX-protein geranylgeranyltransferase complex4.92E-04
5GO:0000138: Golgi trans cisterna4.92E-04
6GO:0005887: integral component of plasma membrane9.73E-04
7GO:0031304: intrinsic component of mitochondrial inner membrane1.06E-03
8GO:0032580: Golgi cisterna membrane1.25E-03
9GO:0042406: extrinsic component of endoplasmic reticulum membrane1.73E-03
10GO:0008287: protein serine/threonine phosphatase complex1.73E-03
11GO:0070062: extracellular exosome2.51E-03
12GO:0016363: nuclear matrix6.48E-03
13GO:0000145: exocyst7.79E-03
14GO:0005834: heterotrimeric G-protein complex8.14E-03
15GO:0005774: vacuolar membrane1.03E-02
16GO:0030125: clathrin vesicle coat1.46E-02
17GO:0005740: mitochondrial envelope1.46E-02
18GO:0009506: plasmodesma1.50E-02
19GO:0000325: plant-type vacuole1.60E-02
20GO:0031012: extracellular matrix1.96E-02
21GO:0005794: Golgi apparatus2.22E-02
22GO:0030176: integral component of endoplasmic reticulum membrane2.31E-02
23GO:0005737: cytoplasm2.47E-02
24GO:0005769: early endosome2.50E-02
25GO:0005758: mitochondrial intermembrane space2.69E-02
26GO:0005770: late endosome4.39E-02
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Gene type



Gene DE type