co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G25600

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071327: cellular response to trehalose stimulus	0.00E+00
2	GO:0090359: negative regulation of abscisic acid biosynthetic process	0.00E+00
3	GO:1900367: positive regulation of defense response to insect	0.00E+00
4	GO:0002764: immune response-regulating signaling pathway	0.00E+00
5	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
6	GO:0080142: regulation of salicylic acid biosynthetic process	3.00E-05
7	GO:0010225: response to UV-C	4.82E-05
8	GO:0031348: negative regulation of defense response	7.26E-05
9	GO:0010150: leaf senescence	8.40E-05
10	GO:1901183: positive regulation of camalexin biosynthetic process	2.02E-04
11	GO:0010365: positive regulation of ethylene biosynthetic process	2.02E-04
12	GO:0051938: L-glutamate import	2.02E-04
13	GO:0019567: arabinose biosynthetic process	2.02E-04
14	GO:0010421: hydrogen peroxide-mediated programmed cell death	2.02E-04
15	GO:0090333: regulation of stomatal closure	2.53E-04
16	GO:0046777: protein autophosphorylation	3.55E-04
17	GO:0010115: regulation of abscisic acid biosynthetic process	4.52E-04
18	GO:0010271: regulation of chlorophyll catabolic process	4.52E-04
19	GO:0010541: acropetal auxin transport	4.52E-04
20	GO:0019725: cellular homeostasis	4.52E-04
21	GO:0002221: pattern recognition receptor signaling pathway	4.52E-04
22	GO:0043091: L-arginine import	4.52E-04
23	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	4.52E-04
24	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	4.52E-04
25	GO:0015802: basic amino acid transport	4.52E-04
26	GO:0010618: aerenchyma formation	4.52E-04
27	GO:0009751: response to salicylic acid	6.19E-04
28	GO:0010167: response to nitrate	6.71E-04
29	GO:0016045: detection of bacterium	7.36E-04
30	GO:0034051: negative regulation of plant-type hypersensitive response	7.36E-04
31	GO:0009062: fatty acid catabolic process	7.36E-04
32	GO:1900140: regulation of seedling development	7.36E-04
33	GO:0010359: regulation of anion channel activity	7.36E-04
34	GO:0051176: positive regulation of sulfur metabolic process	7.36E-04
35	GO:0006952: defense response	9.69E-04
36	GO:0010306: rhamnogalacturonan II biosynthetic process	1.05E-03
37	GO:0046836: glycolipid transport	1.05E-03
38	GO:0000187: activation of MAPK activity	1.05E-03
39	GO:0046713: borate transport	1.05E-03
40	GO:0072583: clathrin-dependent endocytosis	1.05E-03
41	GO:0016226: iron-sulfur cluster assembly	1.08E-03
42	GO:0010017: red or far-red light signaling pathway	1.08E-03
43	GO:0009625: response to insect	1.18E-03
44	GO:0060548: negative regulation of cell death	1.40E-03
45	GO:0045227: capsule polysaccharide biosynthetic process	1.40E-03
46	GO:0046345: abscisic acid catabolic process	1.40E-03
47	GO:0045088: regulation of innate immune response	1.40E-03
48	GO:0033358: UDP-L-arabinose biosynthetic process	1.40E-03
49	GO:0010508: positive regulation of autophagy	1.40E-03
50	GO:0009626: plant-type hypersensitive response	1.53E-03
51	GO:0009697: salicylic acid biosynthetic process	1.78E-03
52	GO:1900425: negative regulation of defense response to bacterium	2.19E-03
53	GO:0010942: positive regulation of cell death	2.19E-03
54	GO:0010405: arabinogalactan protein metabolic process	2.19E-03
55	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.19E-03
56	GO:0007165: signal transduction	2.24E-03
57	GO:0006468: protein phosphorylation	2.42E-03
58	GO:2000037: regulation of stomatal complex patterning	2.63E-03
59	GO:0010310: regulation of hydrogen peroxide metabolic process	2.63E-03
60	GO:0001666: response to hypoxia	2.85E-03
61	GO:0009816: defense response to bacterium, incompatible interaction	3.01E-03
62	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	3.09E-03
63	GO:1900056: negative regulation of leaf senescence	3.09E-03
64	GO:0010204: defense response signaling pathway, resistance gene-independent	4.10E-03
65	GO:0030968: endoplasmic reticulum unfolded protein response	4.10E-03
66	GO:2000031: regulation of salicylic acid mediated signaling pathway	4.10E-03
67	GO:0010099: regulation of photomorphogenesis	4.10E-03
68	GO:0048527: lateral root development	4.28E-03
69	GO:1900426: positive regulation of defense response to bacterium	5.21E-03
70	GO:0048268: clathrin coat assembly	5.21E-03
71	GO:0048354: mucilage biosynthetic process involved in seed coat development	5.21E-03
72	GO:0010380: regulation of chlorophyll biosynthetic process	5.21E-03
73	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	5.21E-03
74	GO:0007064: mitotic sister chromatid cohesion	5.80E-03
75	GO:0051707: response to other organism	6.04E-03
76	GO:0015770: sucrose transport	6.41E-03
77	GO:0015706: nitrate transport	7.04E-03
78	GO:0010105: negative regulation of ethylene-activated signaling pathway	7.04E-03
79	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	7.04E-03
80	GO:0008361: regulation of cell size	7.04E-03
81	GO:0012501: programmed cell death	7.04E-03
82	GO:0002213: defense response to insect	7.04E-03
83	GO:0006855: drug transmembrane transport	7.05E-03
84	GO:0009611: response to wounding	7.33E-03
85	GO:0010229: inflorescence development	7.70E-03
86	GO:0009785: blue light signaling pathway	7.70E-03
87	GO:0007034: vacuolar transport	8.37E-03
88	GO:0010540: basipetal auxin transport	8.37E-03
89	GO:0009266: response to temperature stimulus	8.37E-03
90	GO:0010200: response to chitin	8.55E-03
91	GO:0009909: regulation of flower development	9.02E-03
92	GO:0070588: calcium ion transmembrane transport	9.07E-03
93	GO:0009225: nucleotide-sugar metabolic process	9.07E-03
94	GO:0005985: sucrose metabolic process	9.07E-03
95	GO:0003333: amino acid transmembrane transport	1.21E-02
96	GO:0009269: response to desiccation	1.21E-02
97	GO:0009742: brassinosteroid mediated signaling pathway	1.23E-02
98	GO:0009814: defense response, incompatible interaction	1.29E-02
99	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.29E-02
100	GO:0010227: floral organ abscission	1.37E-02
101	GO:0006012: galactose metabolic process	1.37E-02
102	GO:0006284: base-excision repair	1.45E-02
103	GO:0042147: retrograde transport, endosome to Golgi	1.54E-02
104	GO:0042391: regulation of membrane potential	1.62E-02
105	GO:0042631: cellular response to water deprivation	1.62E-02
106	GO:0009646: response to absence of light	1.80E-02
107	GO:0009749: response to glucose	1.89E-02
108	GO:0000302: response to reactive oxygen species	1.99E-02
109	GO:0006891: intra-Golgi vesicle-mediated transport	1.99E-02
110	GO:0006635: fatty acid beta-oxidation	1.99E-02
111	GO:0002229: defense response to oomycetes	1.99E-02
112	GO:0016032: viral process	2.08E-02
113	GO:0009630: gravitropism	2.08E-02
114	GO:0007264: small GTPase mediated signal transduction	2.08E-02
115	GO:0006470: protein dephosphorylation	2.30E-02
116	GO:0007166: cell surface receptor signaling pathway	2.30E-02
117	GO:0010468: regulation of gene expression	2.40E-02
118	GO:0016579: protein deubiquitination	2.48E-02
119	GO:0009911: positive regulation of flower development	2.58E-02
120	GO:0009627: systemic acquired resistance	2.80E-02
121	GO:0042128: nitrate assimilation	2.80E-02
122	GO:0048573: photoperiodism, flowering	2.90E-02
123	GO:0006950: response to stress	2.90E-02
124	GO:0035556: intracellular signal transduction	2.96E-02
125	GO:0008219: cell death	3.12E-02
126	GO:0009817: defense response to fungus, incompatible interaction	3.12E-02
127	GO:0009832: plant-type cell wall biogenesis	3.23E-02
128	GO:0006499: N-terminal protein myristoylation	3.35E-02
129	GO:0009867: jasmonic acid mediated signaling pathway	3.69E-02
130	GO:0045087: innate immune response	3.69E-02
131	GO:0006897: endocytosis	4.18E-02
132	GO:0042542: response to hydrogen peroxide	4.30E-02
133	GO:0009640: photomorphogenesis	4.42E-02
134	GO:0009744: response to sucrose	4.42E-02
135	GO:0045892: negative regulation of transcription, DNA-templated	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0043916: DNA-7-methylguanine glycosylase activity	0.00E+00
2	GO:0052821: DNA-7-methyladenine glycosylase activity	0.00E+00
3	GO:0003905: alkylbase DNA N-glycosylase activity	0.00E+00
4	GO:0052822: DNA-3-methylguanine glycosylase activity	0.00E+00
5	GO:0032050: clathrin heavy chain binding	2.02E-04
6	GO:0008809: carnitine racemase activity	2.02E-04
7	GO:0015085: calcium ion transmembrane transporter activity	2.02E-04
8	GO:0001671: ATPase activator activity	4.52E-04
9	GO:0022821: potassium ion antiporter activity	4.52E-04
10	GO:0004674: protein serine/threonine kinase activity	6.97E-04
11	GO:0016301: kinase activity	7.01E-04
12	GO:0016595: glutamate binding	7.36E-04
13	GO:0043424: protein histidine kinase binding	9.08E-04
14	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.05E-03
15	GO:0015189: L-lysine transmembrane transporter activity	1.05E-03
16	GO:0017089: glycolipid transporter activity	1.05E-03
17	GO:0015181: arginine transmembrane transporter activity	1.05E-03
18	GO:0005525: GTP binding	1.10E-03
19	GO:0043531: ADP binding	1.36E-03
20	GO:0050373: UDP-arabinose 4-epimerase activity	1.40E-03
21	GO:0051861: glycolipid binding	1.40E-03
22	GO:0005313: L-glutamate transmembrane transporter activity	1.40E-03
23	GO:0019199: transmembrane receptor protein kinase activity	1.40E-03
24	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.78E-03
25	GO:0008725: DNA-3-methyladenine glycosylase activity	1.78E-03
26	GO:0010294: abscisic acid glucosyltransferase activity	1.78E-03
27	GO:0035252: UDP-xylosyltransferase activity	2.19E-03
28	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.19E-03
29	GO:0003978: UDP-glucose 4-epimerase activity	2.63E-03
30	GO:0004012: phospholipid-translocating ATPase activity	2.63E-03
31	GO:0003924: GTPase activity	2.97E-03
32	GO:0008506: sucrose:proton symporter activity	3.09E-03
33	GO:0008375: acetylglucosaminyltransferase activity	3.17E-03
34	GO:0005515: protein binding	3.50E-03
35	GO:0004708: MAP kinase kinase activity	3.59E-03
36	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.59E-03
37	GO:0015238: drug transmembrane transporter activity	3.89E-03
38	GO:0015112: nitrate transmembrane transporter activity	5.21E-03
39	GO:0015174: basic amino acid transmembrane transporter activity	5.21E-03
40	GO:0004568: chitinase activity	5.80E-03
41	GO:0005545: 1-phosphatidylinositol binding	5.80E-03
42	GO:0008047: enzyme activator activity	5.80E-03
43	GO:0008515: sucrose transmembrane transporter activity	6.41E-03
44	GO:0005543: phospholipid binding	6.41E-03
45	GO:0008559: xenobiotic-transporting ATPase activity	6.41E-03
46	GO:0008378: galactosyltransferase activity	7.04E-03
47	GO:0004521: endoribonuclease activity	7.04E-03
48	GO:0005388: calcium-transporting ATPase activity	7.70E-03
49	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	7.70E-03
50	GO:0030552: cAMP binding	9.07E-03
51	GO:0030553: cGMP binding	9.07E-03
52	GO:0003954: NADH dehydrogenase activity	1.05E-02
53	GO:0005216: ion channel activity	1.13E-02
54	GO:0051087: chaperone binding	1.13E-02
55	GO:0033612: receptor serine/threonine kinase binding	1.21E-02
56	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.21E-02
57	GO:0004707: MAP kinase activity	1.21E-02
58	GO:0005249: voltage-gated potassium channel activity	1.62E-02
59	GO:0030551: cyclic nucleotide binding	1.62E-02
60	GO:0030276: clathrin binding	1.71E-02
61	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.88E-02
62	GO:0015297: antiporter activity	1.92E-02
63	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.99E-02
64	GO:0004197: cysteine-type endopeptidase activity	2.08E-02
65	GO:0005524: ATP binding	2.28E-02
66	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.38E-02
67	GO:0004806: triglyceride lipase activity	2.90E-02
68	GO:0000987: core promoter proximal region sequence-specific DNA binding	3.81E-02
69	GO:0051537: 2 iron, 2 sulfur cluster binding	4.68E-02
70	GO:0015293: symporter activity	4.80E-02
71	GO:0005198: structural molecule activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	7.16E-05
2	GO:0005901: caveola	4.52E-04
3	GO:0031304: intrinsic component of mitochondrial inner membrane	4.52E-04
4	GO:0042406: extrinsic component of endoplasmic reticulum membrane	7.36E-04
5	GO:0030139: endocytic vesicle	7.36E-04
6	GO:0005758: mitochondrial intermembrane space	8.26E-04
7	GO:0030125: clathrin vesicle coat	5.80E-03
8	GO:0090404: pollen tube tip	6.41E-03
9	GO:0070469: respiratory chain	1.13E-02
10	GO:0005905: clathrin-coated pit	1.21E-02
11	GO:0030136: clathrin-coated vesicle	1.54E-02
12	GO:0005887: integral component of plasma membrane	1.98E-02
13	GO:0016021: integral component of membrane	2.13E-02
14	GO:0032580: Golgi cisterna membrane	2.28E-02
15	GO:0000325: plant-type vacuole	3.46E-02
16	GO:0000786: nucleosome	3.58E-02
17	GO:0031902: late endosome membrane	4.18E-02