co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G25480

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000505: regulation of energy homeostasis	0.00E+00
2	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
3	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
4	GO:0010275: NAD(P)H dehydrogenase complex assembly	7.01E-05
5	GO:0006986: response to unfolded protein	1.83E-04
6	GO:0051085: chaperone mediated protein folding requiring cofactor	1.83E-04
7	GO:0010027: thylakoid membrane organization	2.16E-04
8	GO:0015995: chlorophyll biosynthetic process	2.56E-04
9	GO:0000304: response to singlet oxygen	3.18E-04
10	GO:0006751: glutathione catabolic process	3.92E-04
11	GO:0006458: 'de novo' protein folding	4.69E-04
12	GO:0042026: protein refolding	4.69E-04
13	GO:0048564: photosystem I assembly	6.32E-04
14	GO:0032544: plastid translation	7.18E-04
15	GO:0071482: cellular response to light stimulus	7.18E-04
16	GO:0009641: shade avoidance	9.92E-04
17	GO:0018119: peptidyl-cysteine S-nitrosylation	1.09E-03
18	GO:0005983: starch catabolic process	1.19E-03
19	GO:0009725: response to hormone	1.29E-03
20	GO:0006457: protein folding	1.32E-03
21	GO:0010207: photosystem II assembly	1.40E-03
22	GO:0031408: oxylipin biosynthetic process	1.97E-03
23	GO:0061077: chaperone-mediated protein folding	1.97E-03
24	GO:0009561: megagametogenesis	2.35E-03
25	GO:0000413: protein peptidyl-prolyl isomerization	2.61E-03
26	GO:0048544: recognition of pollen	2.88E-03
27	GO:0015979: photosynthesis	3.12E-03
28	GO:0032502: developmental process	3.31E-03
29	GO:0009813: flavonoid biosynthetic process	5.04E-03
30	GO:0045087: innate immune response	5.73E-03
31	GO:0006631: fatty acid metabolic process	6.45E-03
32	GO:0009744: response to sucrose	6.82E-03
33	GO:0006486: protein glycosylation	8.40E-03
34	GO:0009742: brassinosteroid mediated signaling pathway	1.12E-02
35	GO:0040008: regulation of growth	1.53E-02
36	GO:0007623: circadian rhythm	1.58E-02
37	GO:0006470: protein dephosphorylation	1.74E-02
38	GO:0045454: cell redox homeostasis	2.86E-02
39	GO:0006397: mRNA processing	3.42E-02
40	GO:0009735: response to cytokinin	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0051082: unfolded protein binding	1.37E-06
2	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.35E-05
3	GO:0019203: carbohydrate phosphatase activity	2.76E-05
4	GO:0050308: sugar-phosphatase activity	2.76E-05
5	GO:0031072: heat shock protein binding	3.08E-05
6	GO:0005528: FK506 binding	5.28E-05
7	GO:0003839: gamma-glutamylcyclotransferase activity	7.01E-05
8	GO:0005504: fatty acid binding	1.23E-04
9	GO:0004148: dihydrolipoyl dehydrogenase activity	1.23E-04
10	GO:0016851: magnesium chelatase activity	1.83E-04
11	GO:0045430: chalcone isomerase activity	2.48E-04
12	GO:2001070: starch binding	3.92E-04
13	GO:0004017: adenylate kinase activity	4.69E-04
14	GO:0051920: peroxiredoxin activity	4.69E-04
15	GO:0009055: electron carrier activity	5.18E-04
16	GO:0016209: antioxidant activity	6.32E-04
17	GO:0004033: aldo-keto reductase (NADP) activity	6.32E-04
18	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	8.07E-04
19	GO:0019843: rRNA binding	1.07E-03
20	GO:0044183: protein binding involved in protein folding	1.09E-03
21	GO:0008378: galactosyltransferase activity	1.19E-03
22	GO:0008266: poly(U) RNA binding	1.40E-03
23	GO:0051087: chaperone binding	1.85E-03
24	GO:0043424: protein histidine kinase binding	1.85E-03
25	GO:0001085: RNA polymerase II transcription factor binding	2.74E-03
26	GO:0004872: receptor activity	3.02E-03
27	GO:0004721: phosphoprotein phosphatase activity	4.54E-03
28	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	5.38E-03
29	GO:0005507: copper ion binding	1.01E-02
30	GO:0016758: transferase activity, transferring hexosyl groups	1.24E-02
31	GO:0005509: calcium ion binding	1.33E-02
32	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.38E-02
33	GO:0003729: mRNA binding	2.16E-02
34	GO:0004601: peroxidase activity	2.16E-02
35	GO:0003682: chromatin binding	2.24E-02
36	GO:0003735: structural constituent of ribosome	2.88E-02
37	GO:0003723: RNA binding	3.12E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	9.74E-18
2	GO:0009507: chloroplast	3.01E-16
3	GO:0009579: thylakoid	4.89E-10
4	GO:0009534: chloroplast thylakoid	5.10E-10
5	GO:0009941: chloroplast envelope	7.03E-09
6	GO:0009543: chloroplast thylakoid lumen	4.20E-08
7	GO:0031977: thylakoid lumen	2.63E-07
8	GO:0009535: chloroplast thylakoid membrane	2.36E-05
9	GO:0009654: photosystem II oxygen evolving complex	5.92E-05
10	GO:0010007: magnesium chelatase complex	1.23E-04
11	GO:0019898: extrinsic component of membrane	1.36E-04
12	GO:0009533: chloroplast stromal thylakoid	5.49E-04
13	GO:0009508: plastid chromosome	1.29E-03
14	GO:0000312: plastid small ribosomal subunit	1.40E-03
15	GO:0030095: chloroplast photosystem II	1.40E-03
16	GO:0043234: protein complex	1.62E-03
17	GO:0031225: anchored component of membrane	1.67E-03
18	GO:0046658: anchored component of plasma membrane	1.91E-03
19	GO:0010319: stromule	3.75E-03
20	GO:0009295: nucleoid	3.75E-03
21	GO:0030529: intracellular ribonucleoprotein complex	4.06E-03
22	GO:0005667: transcription factor complex	4.38E-03
23	GO:0010287: plastoglobule	1.21E-02
24	GO:0005759: mitochondrial matrix	1.48E-02
25	GO:0005840: ribosome	1.52E-02
26	GO:0009536: plastid	1.77E-02
27	GO:0009505: plant-type cell wall	1.81E-02
28	GO:0022627: cytosolic small ribosomal subunit	1.93E-02
29	GO:0031969: chloroplast membrane	2.51E-02