GO Enrichment Analysis of Co-expressed Genes with
AT3G25120
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010499: proteasomal ubiquitin-independent protein catabolic process | 0.00E+00 |
| 2 | GO:0071985: multivesicular body sorting pathway | 0.00E+00 |
| 3 | GO:0080149: sucrose induced translational repression | 0.00E+00 |
| 4 | GO:0097250: mitochondrial respiratory chain supercomplex assembly | 0.00E+00 |
| 5 | GO:0046680: response to DDT | 0.00E+00 |
| 6 | GO:0010407: non-classical arabinogalactan protein metabolic process | 0.00E+00 |
| 7 | GO:0002084: protein depalmitoylation | 0.00E+00 |
| 8 | GO:0030163: protein catabolic process | 1.07E-05 |
| 9 | GO:0006511: ubiquitin-dependent protein catabolic process | 2.58E-05 |
| 10 | GO:0016192: vesicle-mediated transport | 4.53E-05 |
| 11 | GO:1900384: regulation of flavonol biosynthetic process | 1.98E-04 |
| 12 | GO:0043609: regulation of carbon utilization | 1.98E-04 |
| 13 | GO:0042350: GDP-L-fucose biosynthetic process | 1.98E-04 |
| 14 | GO:0010421: hydrogen peroxide-mediated programmed cell death | 1.98E-04 |
| 15 | GO:0000032: cell wall mannoprotein biosynthetic process | 1.98E-04 |
| 16 | GO:0009688: abscisic acid biosynthetic process | 3.43E-04 |
| 17 | GO:0006886: intracellular protein transport | 4.36E-04 |
| 18 | GO:0009156: ribonucleoside monophosphate biosynthetic process | 4.43E-04 |
| 19 | GO:0015709: thiosulfate transport | 4.43E-04 |
| 20 | GO:0031538: negative regulation of anthocyanin metabolic process | 4.43E-04 |
| 21 | GO:0071422: succinate transmembrane transport | 4.43E-04 |
| 22 | GO:0009805: coumarin biosynthetic process | 4.43E-04 |
| 23 | GO:0042853: L-alanine catabolic process | 4.43E-04 |
| 24 | GO:0002215: defense response to nematode | 4.43E-04 |
| 25 | GO:0018315: molybdenum incorporation into molybdenum-molybdopterin complex | 4.43E-04 |
| 26 | GO:0080026: response to indolebutyric acid | 4.43E-04 |
| 27 | GO:0055046: microgametogenesis | 5.18E-04 |
| 28 | GO:0007033: vacuole organization | 6.52E-04 |
| 29 | GO:0009062: fatty acid catabolic process | 7.22E-04 |
| 30 | GO:0042351: 'de novo' GDP-L-fucose biosynthetic process | 7.22E-04 |
| 31 | GO:0010253: UDP-rhamnose biosynthetic process | 7.22E-04 |
| 32 | GO:0006517: protein deglycosylation | 7.22E-04 |
| 33 | GO:0033591: response to L-ascorbic acid | 7.22E-04 |
| 34 | GO:0009226: nucleotide-sugar biosynthetic process | 1.03E-03 |
| 35 | GO:0043967: histone H4 acetylation | 1.03E-03 |
| 36 | GO:0080024: indolebutyric acid metabolic process | 1.03E-03 |
| 37 | GO:0009298: GDP-mannose biosynthetic process | 1.03E-03 |
| 38 | GO:0015729: oxaloacetate transport | 1.03E-03 |
| 39 | GO:0071329: cellular response to sucrose stimulus | 1.03E-03 |
| 40 | GO:0009165: nucleotide biosynthetic process | 1.37E-03 |
| 41 | GO:1902584: positive regulation of response to water deprivation | 1.37E-03 |
| 42 | GO:0010363: regulation of plant-type hypersensitive response | 1.37E-03 |
| 43 | GO:0097428: protein maturation by iron-sulfur cluster transfer | 1.74E-03 |
| 44 | GO:0045927: positive regulation of growth | 1.74E-03 |
| 45 | GO:0071423: malate transmembrane transport | 1.74E-03 |
| 46 | GO:0009651: response to salt stress | 2.01E-03 |
| 47 | GO:0006777: Mo-molybdopterin cofactor biosynthetic process | 2.14E-03 |
| 48 | GO:0006555: methionine metabolic process | 2.14E-03 |
| 49 | GO:0042176: regulation of protein catabolic process | 2.14E-03 |
| 50 | GO:0010315: auxin efflux | 2.14E-03 |
| 51 | GO:0035435: phosphate ion transmembrane transport | 2.14E-03 |
| 52 | GO:0043966: histone H3 acetylation | 2.57E-03 |
| 53 | GO:0017148: negative regulation of translation | 2.57E-03 |
| 54 | GO:0009554: megasporogenesis | 2.57E-03 |
| 55 | GO:0080113: regulation of seed growth | 2.57E-03 |
| 56 | GO:0019509: L-methionine salvage from methylthioadenosine | 2.57E-03 |
| 57 | GO:0034389: lipid particle organization | 2.57E-03 |
| 58 | GO:0006368: transcription elongation from RNA polymerase II promoter | 3.03E-03 |
| 59 | GO:0006744: ubiquinone biosynthetic process | 3.03E-03 |
| 60 | GO:0080186: developmental vegetative growth | 3.03E-03 |
| 61 | GO:0008272: sulfate transport | 3.03E-03 |
| 62 | GO:0006605: protein targeting | 3.51E-03 |
| 63 | GO:0007155: cell adhesion | 3.51E-03 |
| 64 | GO:0010928: regulation of auxin mediated signaling pathway | 3.51E-03 |
| 65 | GO:0035265: organ growth | 3.51E-03 |
| 66 | GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline | 3.51E-03 |
| 67 | GO:0006491: N-glycan processing | 3.51E-03 |
| 68 | GO:0046686: response to cadmium ion | 3.73E-03 |
| 69 | GO:0006499: N-terminal protein myristoylation | 3.95E-03 |
| 70 | GO:0006972: hyperosmotic response | 4.02E-03 |
| 71 | GO:0009699: phenylpropanoid biosynthetic process | 4.02E-03 |
| 72 | GO:0006002: fructose 6-phosphate metabolic process | 4.02E-03 |
| 73 | GO:0015996: chlorophyll catabolic process | 4.02E-03 |
| 74 | GO:0010043: response to zinc ion | 4.15E-03 |
| 75 | GO:2000024: regulation of leaf development | 4.54E-03 |
| 76 | GO:0009835: fruit ripening | 4.54E-03 |
| 77 | GO:0046685: response to arsenic-containing substance | 4.54E-03 |
| 78 | GO:0055114: oxidation-reduction process | 4.83E-03 |
| 79 | GO:0000103: sulfate assimilation | 5.67E-03 |
| 80 | GO:0051555: flavonol biosynthetic process | 5.67E-03 |
| 81 | GO:0009744: response to sucrose | 5.85E-03 |
| 82 | GO:0007275: multicellular organism development | 5.90E-03 |
| 83 | GO:0046856: phosphatidylinositol dephosphorylation | 6.27E-03 |
| 84 | GO:0045037: protein import into chloroplast stroma | 6.89E-03 |
| 85 | GO:0006486: protein glycosylation | 7.88E-03 |
| 86 | GO:0051603: proteolysis involved in cellular protein catabolic process | 8.16E-03 |
| 87 | GO:0034605: cellular response to heat | 8.19E-03 |
| 88 | GO:0019853: L-ascorbic acid biosynthetic process | 8.87E-03 |
| 89 | GO:0090351: seedling development | 8.87E-03 |
| 90 | GO:0010053: root epidermal cell differentiation | 8.87E-03 |
| 91 | GO:0009225: nucleotide-sugar metabolic process | 8.87E-03 |
| 92 | GO:0009825: multidimensional cell growth | 8.87E-03 |
| 93 | GO:0000162: tryptophan biosynthetic process | 9.57E-03 |
| 94 | GO:0034976: response to endoplasmic reticulum stress | 9.57E-03 |
| 95 | GO:0045454: cell redox homeostasis | 9.88E-03 |
| 96 | GO:0009116: nucleoside metabolic process | 1.03E-02 |
| 97 | GO:0008299: isoprenoid biosynthetic process | 1.10E-02 |
| 98 | GO:0019915: lipid storage | 1.18E-02 |
| 99 | GO:0019748: secondary metabolic process | 1.26E-02 |
| 100 | GO:0009814: defense response, incompatible interaction | 1.26E-02 |
| 101 | GO:0009751: response to salicylic acid | 1.27E-02 |
| 102 | GO:0042127: regulation of cell proliferation | 1.42E-02 |
| 103 | GO:0010584: pollen exine formation | 1.42E-02 |
| 104 | GO:0009561: megagametogenesis | 1.42E-02 |
| 105 | GO:0008284: positive regulation of cell proliferation | 1.50E-02 |
| 106 | GO:0010501: RNA secondary structure unwinding | 1.59E-02 |
| 107 | GO:0010118: stomatal movement | 1.59E-02 |
| 108 | GO:0006662: glycerol ether metabolic process | 1.67E-02 |
| 109 | GO:0010182: sugar mediated signaling pathway | 1.67E-02 |
| 110 | GO:0009646: response to absence of light | 1.76E-02 |
| 111 | GO:0009851: auxin biosynthetic process | 1.85E-02 |
| 112 | GO:0006623: protein targeting to vacuole | 1.85E-02 |
| 113 | GO:0006635: fatty acid beta-oxidation | 1.94E-02 |
| 114 | GO:0016032: viral process | 2.04E-02 |
| 115 | GO:0009567: double fertilization forming a zygote and endosperm | 2.23E-02 |
| 116 | GO:0019760: glucosinolate metabolic process | 2.23E-02 |
| 117 | GO:0016579: protein deubiquitination | 2.42E-02 |
| 118 | GO:0001666: response to hypoxia | 2.53E-02 |
| 119 | GO:0009738: abscisic acid-activated signaling pathway | 2.55E-02 |
| 120 | GO:0006906: vesicle fusion | 2.73E-02 |
| 121 | GO:0006888: ER to Golgi vesicle-mediated transport | 2.84E-02 |
| 122 | GO:0009817: defense response to fungus, incompatible interaction | 3.05E-02 |
| 123 | GO:0048767: root hair elongation | 3.16E-02 |
| 124 | GO:0009860: pollen tube growth | 3.25E-02 |
| 125 | GO:0006811: ion transport | 3.27E-02 |
| 126 | GO:0009407: toxin catabolic process | 3.27E-02 |
| 127 | GO:0007568: aging | 3.38E-02 |
| 128 | GO:0045087: innate immune response | 3.61E-02 |
| 129 | GO:0016051: carbohydrate biosynthetic process | 3.61E-02 |
| 130 | GO:0034599: cellular response to oxidative stress | 3.73E-02 |
| 131 | GO:0006839: mitochondrial transport | 3.96E-02 |
| 132 | GO:0006887: exocytosis | 4.08E-02 |
| 133 | GO:0006631: fatty acid metabolic process | 4.08E-02 |
| 134 | GO:0010114: response to red light | 4.32E-02 |
| 135 | GO:0051707: response to other organism | 4.32E-02 |
| 136 | GO:0008283: cell proliferation | 4.32E-02 |
| 137 | GO:0000209: protein polyubiquitination | 4.45E-02 |
| 138 | GO:0009636: response to toxic substance | 4.70E-02 |
| 139 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061133: endopeptidase activator activity | 0.00E+00 |
| 2 | GO:0016504: peptidase activator activity | 0.00E+00 |
| 3 | GO:0070577: lysine-acetylated histone binding | 0.00E+00 |
| 4 | GO:0102867: molybdenum cofactor sulfurtransferase activity | 0.00E+00 |
| 5 | GO:0070628: proteasome binding | 2.88E-05 |
| 6 | GO:0008320: protein transmembrane transporter activity | 1.26E-04 |
| 7 | GO:0004476: mannose-6-phosphate isomerase activity | 1.98E-04 |
| 8 | GO:0009000: selenocysteine lyase activity | 1.98E-04 |
| 9 | GO:0050577: GDP-L-fucose synthase activity | 1.98E-04 |
| 10 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.98E-04 |
| 11 | GO:0043813: phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity | 1.98E-04 |
| 12 | GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity | 1.98E-04 |
| 13 | GO:0102293: pheophytinase b activity | 1.98E-04 |
| 14 | GO:0032266: phosphatidylinositol-3-phosphate binding | 1.98E-04 |
| 15 | GO:1901677: phosphate transmembrane transporter activity | 4.43E-04 |
| 16 | GO:0047746: chlorophyllase activity | 4.43E-04 |
| 17 | GO:0010297: heteropolysaccharide binding | 4.43E-04 |
| 18 | GO:0008460: dTDP-glucose 4,6-dehydratase activity | 4.43E-04 |
| 19 | GO:0010280: UDP-L-rhamnose synthase activity | 4.43E-04 |
| 20 | GO:0050347: trans-octaprenyltranstransferase activity | 4.43E-04 |
| 21 | GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity | 4.43E-04 |
| 22 | GO:0008805: carbon-monoxide oxygenase activity | 4.43E-04 |
| 23 | GO:0050377: UDP-glucose 4,6-dehydratase activity | 4.43E-04 |
| 24 | GO:0015117: thiosulfate transmembrane transporter activity | 4.43E-04 |
| 25 | GO:0048531: beta-1,3-galactosyltransferase activity | 4.43E-04 |
| 26 | GO:0008265: Mo-molybdopterin cofactor sulfurase activity | 7.22E-04 |
| 27 | GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity | 7.22E-04 |
| 28 | GO:0005310: dicarboxylic acid transmembrane transporter activity | 7.22E-04 |
| 29 | GO:0015141: succinate transmembrane transporter activity | 7.22E-04 |
| 30 | GO:0043130: ubiquitin binding | 8.01E-04 |
| 31 | GO:0004298: threonine-type endopeptidase activity | 9.64E-04 |
| 32 | GO:0016656: monodehydroascorbate reductase (NADH) activity | 1.03E-03 |
| 33 | GO:0004165: dodecenoyl-CoA delta-isomerase activity | 1.03E-03 |
| 34 | GO:0017077: oxidative phosphorylation uncoupler activity | 1.03E-03 |
| 35 | GO:0004749: ribose phosphate diphosphokinase activity | 1.03E-03 |
| 36 | GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity | 1.03E-03 |
| 37 | GO:0015131: oxaloacetate transmembrane transporter activity | 1.03E-03 |
| 38 | GO:0004031: aldehyde oxidase activity | 1.37E-03 |
| 39 | GO:0050302: indole-3-acetaldehyde oxidase activity | 1.37E-03 |
| 40 | GO:0004659: prenyltransferase activity | 1.37E-03 |
| 41 | GO:0000993: RNA polymerase II core binding | 1.37E-03 |
| 42 | GO:0016853: isomerase activity | 1.67E-03 |
| 43 | GO:0030151: molybdenum ion binding | 1.74E-03 |
| 44 | GO:0004040: amidase activity | 1.74E-03 |
| 45 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 2.14E-03 |
| 46 | GO:0008474: palmitoyl-(protein) hydrolase activity | 2.14E-03 |
| 47 | GO:0004656: procollagen-proline 4-dioxygenase activity | 2.57E-03 |
| 48 | GO:0003950: NAD+ ADP-ribosyltransferase activity | 2.57E-03 |
| 49 | GO:0003872: 6-phosphofructokinase activity | 3.03E-03 |
| 50 | GO:0015140: malate transmembrane transporter activity | 3.03E-03 |
| 51 | GO:0008375: acetylglucosaminyltransferase activity | 3.07E-03 |
| 52 | GO:0003746: translation elongation factor activity | 4.54E-03 |
| 53 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 4.54E-03 |
| 54 | GO:0016887: ATPase activity | 5.50E-03 |
| 55 | GO:0030234: enzyme regulator activity | 5.67E-03 |
| 56 | GO:0008559: xenobiotic-transporting ATPase activity | 6.27E-03 |
| 57 | GO:0004161: dimethylallyltranstransferase activity | 6.27E-03 |
| 58 | GO:0015116: sulfate transmembrane transporter activity | 6.89E-03 |
| 59 | GO:0008378: galactosyltransferase activity | 6.89E-03 |
| 60 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 6.89E-03 |
| 61 | GO:0050660: flavin adenine dinucleotide binding | 7.19E-03 |
| 62 | GO:0031072: heat shock protein binding | 7.52E-03 |
| 63 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 8.19E-03 |
| 64 | GO:0004175: endopeptidase activity | 8.19E-03 |
| 65 | GO:0004867: serine-type endopeptidase inhibitor activity | 8.87E-03 |
| 66 | GO:0051536: iron-sulfur cluster binding | 1.03E-02 |
| 67 | GO:0031418: L-ascorbic acid binding | 1.03E-02 |
| 68 | GO:0015035: protein disulfide oxidoreductase activity | 1.16E-02 |
| 69 | GO:0008408: 3'-5' exonuclease activity | 1.18E-02 |
| 70 | GO:0009055: electron carrier activity | 1.41E-02 |
| 71 | GO:0003756: protein disulfide isomerase activity | 1.42E-02 |
| 72 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.45E-02 |
| 73 | GO:0047134: protein-disulfide reductase activity | 1.50E-02 |
| 74 | GO:0030170: pyridoxal phosphate binding | 1.57E-02 |
| 75 | GO:0004402: histone acetyltransferase activity | 1.59E-02 |
| 76 | GO:0004527: exonuclease activity | 1.67E-02 |
| 77 | GO:0050662: coenzyme binding | 1.76E-02 |
| 78 | GO:0004791: thioredoxin-disulfide reductase activity | 1.76E-02 |
| 79 | GO:0005506: iron ion binding | 1.91E-02 |
| 80 | GO:0004843: thiol-dependent ubiquitin-specific protease activity | 1.94E-02 |
| 81 | GO:0044212: transcription regulatory region DNA binding | 1.96E-02 |
| 82 | GO:0004518: nuclease activity | 2.04E-02 |
| 83 | GO:0004197: cysteine-type endopeptidase activity | 2.04E-02 |
| 84 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.13E-02 |
| 85 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 2.33E-02 |
| 86 | GO:0008237: metallopeptidase activity | 2.33E-02 |
| 87 | GO:0051213: dioxygenase activity | 2.53E-02 |
| 88 | GO:0004004: ATP-dependent RNA helicase activity | 2.84E-02 |
| 89 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 2.84E-02 |
| 90 | GO:0016491: oxidoreductase activity | 2.94E-02 |
| 91 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 3.38E-02 |
| 92 | GO:0000149: SNARE binding | 3.84E-02 |
| 93 | GO:0061630: ubiquitin protein ligase activity | 3.93E-02 |
| 94 | GO:0042393: histone binding | 3.96E-02 |
| 95 | GO:0004364: glutathione transferase activity | 4.20E-02 |
| 96 | GO:0005484: SNAP receptor activity | 4.32E-02 |
| 97 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.57E-02 |
| 98 | GO:0005198: structural molecule activity | 4.70E-02 |
| 99 | GO:0005525: GTP binding | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008541: proteasome regulatory particle, lid subcomplex | 1.88E-07 |
| 2 | GO:0000502: proteasome complex | 4.27E-07 |
| 3 | GO:0005839: proteasome core complex | 6.01E-05 |
| 4 | GO:0005789: endoplasmic reticulum membrane | 6.61E-05 |
| 5 | GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane | 1.26E-04 |
| 6 | GO:0008023: transcription elongation factor complex | 1.98E-04 |
| 7 | GO:0000814: ESCRT II complex | 4.43E-04 |
| 8 | GO:0030130: clathrin coat of trans-Golgi network vesicle | 7.22E-04 |
| 9 | GO:0030132: clathrin coat of coated pit | 7.22E-04 |
| 10 | GO:0033588: Elongator holoenzyme complex | 1.03E-03 |
| 11 | GO:0005945: 6-phosphofructokinase complex | 1.74E-03 |
| 12 | GO:0016592: mediator complex | 2.04E-03 |
| 13 | GO:0032580: Golgi cisterna membrane | 2.32E-03 |
| 14 | GO:0016021: integral component of membrane | 2.53E-03 |
| 15 | GO:0005886: plasma membrane | 2.56E-03 |
| 16 | GO:0005788: endoplasmic reticulum lumen | 2.91E-03 |
| 17 | GO:0000123: histone acetyltransferase complex | 3.03E-03 |
| 18 | GO:0031982: vesicle | 3.51E-03 |
| 19 | GO:0005811: lipid particle | 4.02E-03 |
| 20 | GO:0019773: proteasome core complex, alpha-subunit complex | 4.02E-03 |
| 21 | GO:0005794: Golgi apparatus | 4.25E-03 |
| 22 | GO:0031901: early endosome membrane | 4.54E-03 |
| 23 | GO:0008540: proteasome regulatory particle, base subcomplex | 5.10E-03 |
| 24 | GO:0005829: cytosol | 5.71E-03 |
| 25 | GO:0005774: vacuolar membrane | 6.29E-03 |
| 26 | GO:0005769: early endosome | 9.57E-03 |
| 27 | GO:0005737: cytoplasm | 1.01E-02 |
| 28 | GO:0005783: endoplasmic reticulum | 1.12E-02 |
| 29 | GO:0005770: late endosome | 1.67E-02 |
| 30 | GO:0005615: extracellular space | 2.18E-02 |
| 31 | GO:0009536: plastid | 2.65E-02 |
| 32 | GO:0000325: plant-type vacuole | 3.38E-02 |
| 33 | GO:0031902: late endosome membrane | 4.08E-02 |
| 34 | GO:0031201: SNARE complex | 4.08E-02 |