co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G23730

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
2	GO:0009583: detection of light stimulus	0.00E+00
3	GO:0006114: glycerol biosynthetic process	0.00E+00
4	GO:0045176: apical protein localization	0.00E+00
5	GO:0071000: response to magnetism	0.00E+00
6	GO:0080127: fruit septum development	0.00E+00
7	GO:1905177: tracheary element differentiation	0.00E+00
8	GO:0010582: floral meristem determinacy	3.21E-05
9	GO:0010158: abaxial cell fate specification	7.32E-05
10	GO:0006436: tryptophanyl-tRNA aminoacylation	2.60E-04
11	GO:0000066: mitochondrial ornithine transport	2.60E-04
12	GO:0034757: negative regulation of iron ion transport	2.60E-04
13	GO:0010080: regulation of floral meristem growth	2.60E-04
14	GO:0042547: cell wall modification involved in multidimensional cell growth	2.60E-04
15	GO:0072387: flavin adenine dinucleotide metabolic process	2.60E-04
16	GO:0043087: regulation of GTPase activity	2.60E-04
17	GO:0009657: plastid organization	3.02E-04
18	GO:0000373: Group II intron splicing	3.65E-04
19	GO:0010289: homogalacturonan biosynthetic process	5.74E-04
20	GO:0010343: singlet oxygen-mediated programmed cell death	5.74E-04
21	GO:1901529: positive regulation of anion channel activity	5.74E-04
22	GO:0048255: mRNA stabilization	5.74E-04
23	GO:0006435: threonyl-tRNA aminoacylation	5.74E-04
24	GO:0010617: circadian regulation of calcium ion oscillation	5.74E-04
25	GO:0010271: regulation of chlorophyll catabolic process	5.74E-04
26	GO:0099402: plant organ development	5.74E-04
27	GO:0001736: establishment of planar polarity	5.74E-04
28	GO:0006094: gluconeogenesis	7.57E-04
29	GO:1902448: positive regulation of shade avoidance	9.31E-04
30	GO:0010022: meristem determinacy	9.31E-04
31	GO:1901672: positive regulation of systemic acquired resistance	9.31E-04
32	GO:0080117: secondary growth	9.31E-04
33	GO:0010623: programmed cell death involved in cell development	9.31E-04
34	GO:0051513: regulation of monopolar cell growth	1.33E-03
35	GO:0051639: actin filament network formation	1.33E-03
36	GO:0034059: response to anoxia	1.33E-03
37	GO:1990019: protein storage vacuole organization	1.33E-03
38	GO:0009800: cinnamic acid biosynthetic process	1.33E-03
39	GO:1901332: negative regulation of lateral root development	1.33E-03
40	GO:0051781: positive regulation of cell division	1.78E-03
41	GO:0051764: actin crosslink formation	1.78E-03
42	GO:0051322: anaphase	1.78E-03
43	GO:0010508: positive regulation of autophagy	1.78E-03
44	GO:0015846: polyamine transport	1.78E-03
45	GO:1902347: response to strigolactone	1.78E-03
46	GO:1902183: regulation of shoot apical meristem development	2.27E-03
47	GO:0080110: sporopollenin biosynthetic process	2.27E-03
48	GO:0010117: photoprotection	2.27E-03
49	GO:0046283: anthocyanin-containing compound metabolic process	2.27E-03
50	GO:0048827: phyllome development	2.80E-03
51	GO:0006555: methionine metabolic process	2.80E-03
52	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.80E-03
53	GO:1901371: regulation of leaf morphogenesis	2.80E-03
54	GO:0006559: L-phenylalanine catabolic process	2.80E-03
55	GO:0060918: auxin transport	2.80E-03
56	GO:0048831: regulation of shoot system development	2.80E-03
57	GO:0003006: developmental process involved in reproduction	2.80E-03
58	GO:0010583: response to cyclopentenone	3.02E-03
59	GO:0010310: regulation of hydrogen peroxide metabolic process	3.36E-03
60	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.36E-03
61	GO:0042372: phylloquinone biosynthetic process	3.36E-03
62	GO:0048509: regulation of meristem development	3.36E-03
63	GO:0009610: response to symbiotic fungus	3.97E-03
64	GO:0006955: immune response	3.97E-03
65	GO:0010050: vegetative phase change	3.97E-03
66	GO:0051510: regulation of unidimensional cell growth	3.97E-03
67	GO:0009911: positive regulation of flower development	4.08E-03
68	GO:0000105: histidine biosynthetic process	4.60E-03
69	GO:0007155: cell adhesion	4.60E-03
70	GO:0048564: photosystem I assembly	4.60E-03
71	GO:0009850: auxin metabolic process	4.60E-03
72	GO:0022900: electron transport chain	5.27E-03
73	GO:0018298: protein-chromophore linkage	5.32E-03
74	GO:0000160: phosphorelay signal transduction system	5.59E-03
75	GO:0006098: pentose-phosphate shunt	5.98E-03
76	GO:0048507: meristem development	5.98E-03
77	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.98E-03
78	GO:0010206: photosystem II repair	5.98E-03
79	GO:2000024: regulation of leaf development	5.98E-03
80	GO:0007568: aging	6.15E-03
81	GO:1900426: positive regulation of defense response to bacterium	6.71E-03
82	GO:0009638: phototropism	6.71E-03
83	GO:0035999: tetrahydrofolate interconversion	6.71E-03
84	GO:0010018: far-red light signaling pathway	6.71E-03
85	GO:0009086: methionine biosynthetic process	6.71E-03
86	GO:0048829: root cap development	7.47E-03
87	GO:0019538: protein metabolic process	7.47E-03
88	GO:0006535: cysteine biosynthetic process from serine	7.47E-03
89	GO:0006839: mitochondrial transport	7.69E-03
90	GO:0048765: root hair cell differentiation	8.27E-03
91	GO:0006415: translational termination	8.27E-03
92	GO:0045037: protein import into chloroplast stroma	9.09E-03
93	GO:0010229: inflorescence development	9.94E-03
94	GO:0010075: regulation of meristem growth	9.94E-03
95	GO:0009785: blue light signaling pathway	9.94E-03
96	GO:0010540: basipetal auxin transport	1.08E-02
97	GO:0048467: gynoecium development	1.08E-02
98	GO:0010020: chloroplast fission	1.08E-02
99	GO:0009736: cytokinin-activated signaling pathway	1.18E-02
100	GO:0009416: response to light stimulus	1.24E-02
101	GO:0042753: positive regulation of circadian rhythm	1.27E-02
102	GO:0005992: trehalose biosynthetic process	1.36E-02
103	GO:0019344: cysteine biosynthetic process	1.36E-02
104	GO:0030150: protein import into mitochondrial matrix	1.36E-02
105	GO:0009944: polarity specification of adaxial/abaxial axis	1.36E-02
106	GO:0051017: actin filament bundle assembly	1.36E-02
107	GO:0006289: nucleotide-excision repair	1.36E-02
108	GO:2000377: regulation of reactive oxygen species metabolic process	1.36E-02
109	GO:0006096: glycolytic process	1.39E-02
110	GO:0048316: seed development	1.44E-02
111	GO:0006418: tRNA aminoacylation for protein translation	1.46E-02
112	GO:0048511: rhythmic process	1.56E-02
113	GO:0003333: amino acid transmembrane transport	1.56E-02
114	GO:0016998: cell wall macromolecule catabolic process	1.56E-02
115	GO:0035428: hexose transmembrane transport	1.67E-02
116	GO:0006730: one-carbon metabolic process	1.67E-02
117	GO:0009814: defense response, incompatible interaction	1.67E-02
118	GO:0016226: iron-sulfur cluster assembly	1.67E-02
119	GO:0009793: embryo development ending in seed dormancy	1.75E-02
120	GO:0071215: cellular response to abscisic acid stimulus	1.77E-02
121	GO:0010089: xylem development	1.88E-02
122	GO:0010584: pollen exine formation	1.88E-02
123	GO:0006284: base-excision repair	1.88E-02
124	GO:0019722: calcium-mediated signaling	1.88E-02
125	GO:0070417: cellular response to cold	1.99E-02
126	GO:0010087: phloem or xylem histogenesis	2.11E-02
127	GO:0010118: stomatal movement	2.11E-02
128	GO:0046323: glucose import	2.22E-02
129	GO:0010268: brassinosteroid homeostasis	2.22E-02
130	GO:0010154: fruit development	2.22E-02
131	GO:0009958: positive gravitropism	2.22E-02
132	GO:0042752: regulation of circadian rhythm	2.34E-02
133	GO:0009646: response to absence of light	2.34E-02
134	GO:0048544: recognition of pollen	2.34E-02
135	GO:0042744: hydrogen peroxide catabolic process	2.40E-02
136	GO:0048825: cotyledon development	2.46E-02
137	GO:0016132: brassinosteroid biosynthetic process	2.58E-02
138	GO:0007264: small GTPase mediated signal transduction	2.70E-02
139	GO:0016125: sterol metabolic process	2.96E-02
140	GO:0009639: response to red or far red light	2.96E-02
141	GO:0007267: cell-cell signaling	3.09E-02
142	GO:0000910: cytokinesis	3.22E-02
143	GO:0009734: auxin-activated signaling pathway	3.27E-02
144	GO:0001666: response to hypoxia	3.35E-02
145	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.49E-02
146	GO:0010029: regulation of seed germination	3.49E-02
147	GO:0016311: dephosphorylation	3.91E-02
148	GO:0009817: defense response to fungus, incompatible interaction	4.05E-02
149	GO:0048481: plant ovule development	4.05E-02
150	GO:0009733: response to auxin	4.16E-02
151	GO:0010311: lateral root formation	4.20E-02
152	GO:0010218: response to far red light	4.34E-02
153	GO:0006865: amino acid transport	4.64E-02
154	GO:0009637: response to blue light	4.79E-02
155	GO:0016051: carbohydrate biosynthetic process	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
2	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
3	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
4	GO:0019808: polyamine binding	0.00E+00
5	GO:0042834: peptidoglycan binding	2.60E-04
6	GO:0005290: L-histidine transmembrane transporter activity	2.60E-04
7	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	2.60E-04
8	GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity	2.60E-04
9	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.60E-04
10	GO:0004830: tryptophan-tRNA ligase activity	2.60E-04
11	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	2.60E-04
12	GO:0003879: ATP phosphoribosyltransferase activity	2.60E-04
13	GO:0004047: aminomethyltransferase activity	5.74E-04
14	GO:0000064: L-ornithine transmembrane transporter activity	5.74E-04
15	GO:0009884: cytokinin receptor activity	5.74E-04
16	GO:0004829: threonine-tRNA ligase activity	5.74E-04
17	GO:0050017: L-3-cyanoalanine synthase activity	5.74E-04
18	GO:0005034: osmosensor activity	9.31E-04
19	GO:0052692: raffinose alpha-galactosidase activity	9.31E-04
20	GO:0045548: phenylalanine ammonia-lyase activity	9.31E-04
21	GO:0003913: DNA photolyase activity	9.31E-04
22	GO:0004557: alpha-galactosidase activity	9.31E-04
23	GO:0043424: protein histidine kinase binding	1.28E-03
24	GO:0004300: enoyl-CoA hydratase activity	1.33E-03
25	GO:0015189: L-lysine transmembrane transporter activity	1.33E-03
26	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.33E-03
27	GO:0015181: arginine transmembrane transporter activity	1.33E-03
28	GO:0016149: translation release factor activity, codon specific	1.33E-03
29	GO:0009882: blue light photoreceptor activity	1.33E-03
30	GO:0010011: auxin binding	1.78E-03
31	GO:0010328: auxin influx transmembrane transporter activity	1.78E-03
32	GO:0070628: proteasome binding	1.78E-03
33	GO:0005471: ATP:ADP antiporter activity	2.27E-03
34	GO:0008725: DNA-3-methyladenine glycosylase activity	2.27E-03
35	GO:0004332: fructose-bisphosphate aldolase activity	2.80E-03
36	GO:0031593: polyubiquitin binding	2.80E-03
37	GO:0004518: nuclease activity	3.02E-03
38	GO:0019900: kinase binding	3.36E-03
39	GO:0004124: cysteine synthase activity	3.36E-03
40	GO:0009881: photoreceptor activity	3.97E-03
41	GO:0043022: ribosome binding	4.60E-03
42	GO:0005096: GTPase activator activity	5.59E-03
43	GO:0003747: translation release factor activity	5.98E-03
44	GO:0071949: FAD binding	5.98E-03
45	GO:0004673: protein histidine kinase activity	7.47E-03
46	GO:0004805: trehalose-phosphatase activity	7.47E-03
47	GO:0042802: identical protein binding	7.71E-03
48	GO:0043621: protein self-association	9.42E-03
49	GO:0000155: phosphorelay sensor kinase activity	9.94E-03
50	GO:0015266: protein channel activity	9.94E-03
51	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.27E-02
52	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.27E-02
53	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.27E-02
54	GO:0043130: ubiquitin binding	1.36E-02
55	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.67E-02
56	GO:0004871: signal transducer activity	1.74E-02
57	GO:0030570: pectate lyase activity	1.77E-02
58	GO:0004812: aminoacyl-tRNA ligase activity	1.99E-02
59	GO:0003924: GTPase activity	2.13E-02
60	GO:0010181: FMN binding	2.34E-02
61	GO:0005355: glucose transmembrane transporter activity	2.34E-02
62	GO:0050662: coenzyme binding	2.34E-02
63	GO:0019901: protein kinase binding	2.46E-02
64	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.71E-02
65	GO:0051015: actin filament binding	2.83E-02
66	GO:0000156: phosphorelay response regulator activity	2.83E-02
67	GO:0003684: damaged DNA binding	2.96E-02
68	GO:0008236: serine-type peptidase activity	3.91E-02
69	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.05E-02
70	GO:0008168: methyltransferase activity	4.31E-02
71	GO:0004601: peroxidase activity	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0035452: extrinsic component of plastid membrane	0.00E+00
2	GO:0042597: periplasmic space	0.00E+00
3	GO:0009507: chloroplast	1.71E-07
4	GO:0045254: pyruvate dehydrogenase complex	5.74E-04
5	GO:0009570: chloroplast stroma	6.71E-04
6	GO:0009574: preprophase band	7.57E-04
7	GO:0016605: PML body	9.31E-04
8	GO:0032432: actin filament bundle	1.33E-03
9	GO:0009535: chloroplast thylakoid membrane	2.00E-03
10	GO:0009986: cell surface	3.97E-03
11	GO:0031305: integral component of mitochondrial inner membrane	4.60E-03
12	GO:0009505: plant-type cell wall	5.35E-03
13	GO:0016604: nuclear body	6.71E-03
14	GO:0031225: anchored component of membrane	7.18E-03
15	GO:0046658: anchored component of plasma membrane	8.12E-03
16	GO:0005884: actin filament	8.27E-03
17	GO:0000311: plastid large ribosomal subunit	9.09E-03
18	GO:0005578: proteinaceous extracellular matrix	9.94E-03
19	GO:0009532: plastid stroma	1.56E-02
20	GO:0009579: thylakoid	1.62E-02
21	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.88E-02
22	GO:0010287: plastoglobule	1.99E-02
23	GO:0005770: late endosome	2.22E-02
24	GO:0005768: endosome	3.02E-02
25	GO:0030529: intracellular ribonucleoprotein complex	3.35E-02
26	GO:0009707: chloroplast outer membrane	4.05E-02
27	GO:0000151: ubiquitin ligase complex	4.05E-02
28	GO:0015934: large ribosomal subunit	4.49E-02