Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G23700

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009715: chalcone biosynthetic process0.00E+00
2GO:0042821: pyridoxal biosynthetic process0.00E+00
3GO:0090279: regulation of calcium ion import0.00E+00
4GO:0042820: vitamin B6 catabolic process0.00E+00
5GO:0015882: L-ascorbic acid transport0.00E+00
6GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
7GO:0008298: intracellular mRNA localization0.00E+00
8GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
9GO:0071474: cellular hyperosmotic response0.00E+00
10GO:0009767: photosynthetic electron transport chain8.01E-07
11GO:1902326: positive regulation of chlorophyll biosynthetic process2.96E-06
12GO:0071482: cellular response to light stimulus7.49E-06
13GO:0005977: glycogen metabolic process1.07E-05
14GO:0015979: photosynthesis1.73E-05
15GO:2001141: regulation of RNA biosynthetic process2.42E-05
16GO:0010021: amylopectin biosynthetic process4.39E-05
17GO:0015976: carbon utilization4.39E-05
18GO:0018298: protein-chromophore linkage6.01E-05
19GO:0009904: chloroplast accumulation movement7.01E-05
20GO:0009903: chloroplast avoidance movement1.41E-04
21GO:0009854: oxidative photosynthetic carbon pathway1.41E-04
22GO:0006810: transport1.84E-04
23GO:0034220: ion transmembrane transport1.89E-04
24GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process2.53E-04
25GO:0010362: negative regulation of anion channel activity by blue light2.53E-04
26GO:0009443: pyridoxal 5'-phosphate salvage2.53E-04
27GO:0015969: guanosine tetraphosphate metabolic process2.53E-04
28GO:0046467: membrane lipid biosynthetic process2.53E-04
29GO:0031426: polycistronic mRNA processing2.53E-04
30GO:0051775: response to redox state2.53E-04
31GO:0042371: vitamin K biosynthetic process2.53E-04
32GO:0071461: cellular response to redox state2.53E-04
33GO:0010028: xanthophyll cycle2.53E-04
34GO:0019252: starch biosynthetic process2.56E-04
35GO:0009629: response to gravity5.59E-04
36GO:0080005: photosystem stoichiometry adjustment5.59E-04
37GO:0010541: acropetal auxin transport5.59E-04
38GO:0010155: regulation of proton transport5.59E-04
39GO:0051262: protein tetramerization5.59E-04
40GO:0010275: NAD(P)H dehydrogenase complex assembly5.59E-04
41GO:0019684: photosynthesis, light reaction5.62E-04
42GO:0043085: positive regulation of catalytic activity5.62E-04
43GO:0006352: DNA-templated transcription, initiation5.62E-04
44GO:0015995: chlorophyll biosynthetic process5.64E-04
45GO:0031022: nuclear migration along microfilament9.07E-04
46GO:0010160: formation of animal organ boundary9.07E-04
47GO:0000913: preprophase band assembly9.07E-04
48GO:0034599: cellular response to oxidative stress9.12E-04
49GO:0006833: water transport1.01E-03
50GO:0007017: microtubule-based process1.23E-03
51GO:0006107: oxaloacetate metabolic process1.29E-03
52GO:0010239: chloroplast mRNA processing1.29E-03
53GO:0080170: hydrogen peroxide transmembrane transport1.29E-03
54GO:0043481: anthocyanin accumulation in tissues in response to UV light1.29E-03
55GO:0009226: nucleotide-sugar biosynthetic process1.29E-03
56GO:0010731: protein glutathionylation1.29E-03
57GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.29E-03
58GO:0009765: photosynthesis, light harvesting1.73E-03
59GO:0006109: regulation of carbohydrate metabolic process1.73E-03
60GO:2000122: negative regulation of stomatal complex development1.73E-03
61GO:0030104: water homeostasis1.73E-03
62GO:0031122: cytoplasmic microtubule organization1.73E-03
63GO:0006546: glycine catabolic process1.73E-03
64GO:0006021: inositol biosynthetic process1.73E-03
65GO:0006734: NADH metabolic process1.73E-03
66GO:0010037: response to carbon dioxide1.73E-03
67GO:0006465: signal peptide processing2.21E-03
68GO:0080110: sporopollenin biosynthetic process2.21E-03
69GO:0043097: pyrimidine nucleoside salvage2.21E-03
70GO:0006662: glycerol ether metabolic process2.21E-03
71GO:0045038: protein import into chloroplast thylakoid membrane2.21E-03
72GO:0000278: mitotic cell cycle2.21E-03
73GO:0005975: carbohydrate metabolic process2.30E-03
74GO:0060918: auxin transport2.72E-03
75GO:0010190: cytochrome b6f complex assembly2.72E-03
76GO:0006206: pyrimidine nucleobase metabolic process2.72E-03
77GO:0046855: inositol phosphate dephosphorylation2.72E-03
78GO:0050665: hydrogen peroxide biosynthetic process2.72E-03
79GO:0032502: developmental process2.90E-03
80GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity3.27E-03
81GO:0010189: vitamin E biosynthetic process3.27E-03
82GO:0010019: chloroplast-nucleus signaling pathway3.27E-03
83GO:0009645: response to low light intensity stimulus3.86E-03
84GO:0006400: tRNA modification3.86E-03
85GO:0009395: phospholipid catabolic process3.86E-03
86GO:0042255: ribosome assembly4.48E-03
87GO:0009690: cytokinin metabolic process4.48E-03
88GO:0006353: DNA-templated transcription, termination4.48E-03
89GO:0006605: protein targeting4.48E-03
90GO:0031540: regulation of anthocyanin biosynthetic process4.48E-03
91GO:0052543: callose deposition in cell wall4.48E-03
92GO:0016559: peroxisome fission4.48E-03
93GO:0055085: transmembrane transport4.66E-03
94GO:0006413: translational initiation4.93E-03
95GO:0010204: defense response signaling pathway, resistance gene-independent5.13E-03
96GO:0032544: plastid translation5.13E-03
97GO:0017004: cytochrome complex assembly5.13E-03
98GO:0006811: ion transport5.63E-03
99GO:0048507: meristem development5.81E-03
100GO:0006754: ATP biosynthetic process5.81E-03
101GO:0098656: anion transmembrane transport5.81E-03
102GO:0010119: regulation of stomatal movement5.91E-03
103GO:0009637: response to blue light6.48E-03
104GO:0009638: phototropism6.52E-03
105GO:0007346: regulation of mitotic cell cycle6.52E-03
106GO:0019538: protein metabolic process7.26E-03
107GO:0043069: negative regulation of programmed cell death7.26E-03
108GO:0009089: lysine biosynthetic process via diaminopimelate8.04E-03
109GO:0018119: peptidyl-cysteine S-nitrosylation8.04E-03
110GO:0009684: indoleacetic acid biosynthetic process8.04E-03
111GO:0009926: auxin polar transport8.35E-03
112GO:0006790: sulfur compound metabolic process8.83E-03
113GO:0008361: regulation of cell size8.83E-03
114GO:0009644: response to high light intensity9.04E-03
115GO:0009658: chloroplast organization9.41E-03
116GO:0009785: blue light signaling pathway9.66E-03
117GO:0006108: malate metabolic process9.66E-03
118GO:0010207: photosystem II assembly1.05E-02
119GO:0010020: chloroplast fission1.05E-02
120GO:0019253: reductive pentose-phosphate cycle1.05E-02
121GO:0010540: basipetal auxin transport1.05E-02
122GO:0042343: indole glucosinolate metabolic process1.14E-02
123GO:0019853: L-ascorbic acid biosynthetic process1.14E-02
124GO:0046854: phosphatidylinositol phosphorylation1.14E-02
125GO:0006636: unsaturated fatty acid biosynthetic process1.23E-02
126GO:0042023: DNA endoreduplication1.23E-02
127GO:0009768: photosynthesis, light harvesting in photosystem I1.42E-02
128GO:0098542: defense response to other organism1.52E-02
129GO:0055114: oxidation-reduction process1.61E-02
130GO:0006730: one-carbon metabolic process1.62E-02
131GO:0019748: secondary metabolic process1.62E-02
132GO:0009409: response to cold1.77E-02
133GO:0010584: pollen exine formation1.83E-02
134GO:0048443: stamen development1.83E-02
135GO:0009306: protein secretion1.83E-02
136GO:0042631: cellular response to water deprivation2.05E-02
137GO:0008033: tRNA processing2.05E-02
138GO:0009958: positive gravitropism2.16E-02
139GO:0006520: cellular amino acid metabolic process2.16E-02
140GO:0045489: pectin biosynthetic process2.16E-02
141GO:0007018: microtubule-based movement2.27E-02
142GO:0009791: post-embryonic development2.39E-02
143GO:0008654: phospholipid biosynthetic process2.39E-02
144GO:0006633: fatty acid biosynthetic process2.54E-02
145GO:0016032: viral process2.63E-02
146GO:1901657: glycosyl compound metabolic process2.75E-02
147GO:0007623: circadian rhythm2.79E-02
148GO:0009639: response to red or far red light2.87E-02
149GO:0000910: cytokinesis3.13E-02
150GO:0010027: thylakoid membrane organization3.26E-02
151GO:0008380: RNA splicing3.33E-02
152GO:0009627: systemic acquired resistance3.52E-02
153GO:0016311: dephosphorylation3.80E-02
154GO:0009813: flavonoid biosynthetic process4.08E-02
155GO:0000160: phosphorelay signal transduction system4.08E-02
156GO:0010218: response to far red light4.22E-02
157GO:0048527: lateral root development4.36E-02
158GO:0009631: cold acclimation4.36E-02
159GO:0009853: photorespiration4.66E-02
160GO:0016310: phosphorylation4.76E-02
161GO:0006099: tricarboxylic acid cycle4.80E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
3GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
4GO:0016210: naringenin-chalcone synthase activity0.00E+00
5GO:0043864: indoleacetamide hydrolase activity0.00E+00
6GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
7GO:0010276: phytol kinase activity0.00E+00
8GO:0008974: phosphoribulokinase activity0.00E+00
9GO:0015229: L-ascorbic acid transporter activity0.00E+00
10GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
11GO:0008465: glycerate dehydrogenase activity0.00E+00
12GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
13GO:0019156: isoamylase activity2.96E-06
14GO:0019899: enzyme binding3.39E-06
15GO:0016491: oxidoreductase activity2.68E-05
16GO:0016987: sigma factor activity4.39E-05
17GO:0043495: protein anchor4.39E-05
18GO:0001053: plastid sigma factor activity4.39E-05
19GO:0000293: ferric-chelate reductase activity1.02E-04
20GO:0004556: alpha-amylase activity1.02E-04
21GO:0003993: acid phosphatase activity1.02E-04
22GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.41E-04
23GO:0080132: fatty acid alpha-hydroxylase activity2.53E-04
24GO:0008568: microtubule-severing ATPase activity2.53E-04
25GO:0008746: NAD(P)+ transhydrogenase activity2.53E-04
26GO:0004328: formamidase activity2.53E-04
27GO:0010347: L-galactose-1-phosphate phosphatase activity2.53E-04
28GO:0046906: tetrapyrrole binding2.53E-04
29GO:0005227: calcium activated cation channel activity2.53E-04
30GO:0042802: identical protein binding2.65E-04
31GO:0015250: water channel activity4.57E-04
32GO:0016168: chlorophyll binding4.92E-04
33GO:0004312: fatty acid synthase activity5.59E-04
34GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity5.59E-04
35GO:0061575: cyclin-dependent protein serine/threonine kinase activator activity5.59E-04
36GO:0008934: inositol monophosphate 1-phosphatase activity5.59E-04
37GO:0052833: inositol monophosphate 4-phosphatase activity5.59E-04
38GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase5.59E-04
39GO:0048531: beta-1,3-galactosyltransferase activity5.59E-04
40GO:0008728: GTP diphosphokinase activity5.59E-04
41GO:0004103: choline kinase activity5.59E-04
42GO:0080045: quercetin 3'-O-glucosyltransferase activity5.59E-04
43GO:0004326: tetrahydrofolylpolyglutamate synthase activity5.59E-04
44GO:0004047: aminomethyltransferase activity5.59E-04
45GO:0052832: inositol monophosphate 3-phosphatase activity5.59E-04
46GO:0004089: carbonate dehydratase activity7.28E-04
47GO:0070402: NADPH binding9.07E-04
48GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity9.07E-04
49GO:0048027: mRNA 5'-UTR binding1.29E-03
50GO:0016851: magnesium chelatase activity1.29E-03
51GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.29E-03
52GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.29E-03
53GO:0009882: blue light photoreceptor activity1.29E-03
54GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.29E-03
55GO:0001872: (1->3)-beta-D-glucan binding1.29E-03
56GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.29E-03
57GO:0022891: substrate-specific transmembrane transporter activity1.61E-03
58GO:0004045: aminoacyl-tRNA hydrolase activity1.73E-03
59GO:0080032: methyl jasmonate esterase activity1.73E-03
60GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds1.73E-03
61GO:0009011: starch synthase activity1.73E-03
62GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.73E-03
63GO:0008891: glycolate oxidase activity1.73E-03
64GO:0047134: protein-disulfide reductase activity1.90E-03
65GO:0016788: hydrolase activity, acting on ester bonds1.99E-03
66GO:0008374: O-acyltransferase activity2.21E-03
67GO:0004040: amidase activity2.21E-03
68GO:0010181: FMN binding2.37E-03
69GO:0004791: thioredoxin-disulfide reductase activity2.37E-03
70GO:0016887: ATPase activity2.42E-03
71GO:0016615: malate dehydrogenase activity2.72E-03
72GO:0008200: ion channel inhibitor activity2.72E-03
73GO:0080046: quercetin 4'-O-glucosyltransferase activity2.72E-03
74GO:0004605: phosphatidate cytidylyltransferase activity2.72E-03
75GO:0080030: methyl indole-3-acetate esterase activity2.72E-03
76GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.09E-03
77GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.27E-03
78GO:0004849: uridine kinase activity3.27E-03
79GO:0030060: L-malate dehydrogenase activity3.27E-03
80GO:0005261: cation channel activity3.27E-03
81GO:0005200: structural constituent of cytoskeleton3.49E-03
82GO:0003824: catalytic activity3.80E-03
83GO:0004033: aldo-keto reductase (NADP) activity4.48E-03
84GO:0003924: GTPase activity4.86E-03
85GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism5.81E-03
86GO:0008047: enzyme activator activity7.26E-03
87GO:0005525: GTP binding7.33E-03
88GO:0004185: serine-type carboxypeptidase activity8.35E-03
89GO:0004565: beta-galactosidase activity9.66E-03
90GO:0010329: auxin efflux transmembrane transporter activity9.66E-03
91GO:0008081: phosphoric diester hydrolase activity9.66E-03
92GO:0005315: inorganic phosphate transmembrane transporter activity9.66E-03
93GO:0031072: heat shock protein binding9.66E-03
94GO:0000155: phosphorelay sensor kinase activity9.66E-03
95GO:0008266: poly(U) RNA binding1.05E-02
96GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.13E-02
97GO:0031409: pigment binding1.23E-02
98GO:0043130: ubiquitin binding1.32E-02
99GO:0005528: FK506 binding1.32E-02
100GO:0004857: enzyme inhibitor activity1.32E-02
101GO:0015035: protein disulfide oxidoreductase activity1.66E-02
102GO:0030570: pectate lyase activity1.72E-02
103GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.76E-02
104GO:0003727: single-stranded RNA binding1.83E-02
105GO:0008514: organic anion transmembrane transporter activity1.83E-02
106GO:0008080: N-acetyltransferase activity2.16E-02
107GO:0050662: coenzyme binding2.27E-02
108GO:0019901: protein kinase binding2.39E-02
109GO:0048038: quinone binding2.51E-02
110GO:0008017: microtubule binding2.92E-02
111GO:0005509: calcium ion binding2.95E-02
112GO:0008483: transaminase activity3.00E-02
113GO:0003743: translation initiation factor activity3.26E-02
114GO:0102483: scopolin beta-glucosidase activity3.66E-02
115GO:0030247: polysaccharide binding3.66E-02
116GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.93E-02
117GO:0004693: cyclin-dependent protein serine/threonine kinase activity4.22E-02
118GO:0005515: protein binding4.27E-02
119GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.36E-02
120GO:0008422: beta-glucosidase activity4.95E-02
121GO:0004712: protein serine/threonine/tyrosine kinase activity4.95E-02
RankGO TermAdjusted P value
1GO:0010368: chloroplast isoamylase complex0.00E+00
2GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
3GO:0009507: chloroplast1.59E-25
4GO:0009535: chloroplast thylakoid membrane3.59E-12
5GO:0009570: chloroplast stroma2.22E-08
6GO:0009941: chloroplast envelope7.50E-08
7GO:0009543: chloroplast thylakoid lumen4.27E-07
8GO:0009654: photosystem II oxygen evolving complex2.90E-06
9GO:0042651: thylakoid membrane8.85E-05
10GO:0005773: vacuole9.02E-05
11GO:0009782: photosystem I antenna complex2.53E-04
12GO:0043674: columella2.53E-04
13GO:0005787: signal peptidase complex2.53E-04
14GO:0019898: extrinsic component of membrane2.56E-04
15GO:0009579: thylakoid2.80E-04
16GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.51E-04
17GO:0080085: signal recognition particle, chloroplast targeting5.59E-04
18GO:0030095: chloroplast photosystem II8.19E-04
19GO:0010007: magnesium chelatase complex9.07E-04
20GO:0031977: thylakoid lumen1.07E-03
21GO:0009534: chloroplast thylakoid1.14E-03
22GO:0015630: microtubule cytoskeleton1.29E-03
23GO:0009898: cytoplasmic side of plasma membrane1.73E-03
24GO:0009523: photosystem II2.54E-03
25GO:0031969: chloroplast membrane2.69E-03
26GO:0010319: stromule3.49E-03
27GO:0042807: central vacuole3.86E-03
28GO:0009986: cell surface3.86E-03
29GO:0009539: photosystem II reaction center5.13E-03
30GO:0005786: signal recognition particle, endoplasmic reticulum targeting5.13E-03
31GO:0000307: cyclin-dependent protein kinase holoenzyme complex5.13E-03
32GO:0048046: apoplast5.72E-03
33GO:0042644: chloroplast nucleoid5.81E-03
34GO:0045298: tubulin complex5.81E-03
35GO:0046658: anchored component of plasma membrane7.71E-03
36GO:0016020: membrane8.35E-03
37GO:0016021: integral component of membrane1.05E-02
38GO:0030076: light-harvesting complex1.14E-02
39GO:0005874: microtubule1.18E-02
40GO:0005777: peroxisome1.43E-02
41GO:0005871: kinesin complex1.94E-02
42GO:0005623: cell2.07E-02
43GO:0009522: photosystem I2.27E-02
44GO:0009504: cell plate2.39E-02
45GO:0005694: chromosome2.63E-02
46GO:0009705: plant-type vacuole membrane2.79E-02
47GO:0005887: integral component of plasma membrane2.97E-02
48GO:0005886: plasma membrane2.99E-02
49GO:0030529: intracellular ribonucleoprotein complex3.26E-02
50GO:0009707: chloroplast outer membrane3.93E-02
51GO:0019005: SCF ubiquitin ligase complex3.93E-02
52GO:0005618: cell wall4.41E-02
53GO:0009505: plant-type cell wall4.59E-02
54GO:0005819: spindle4.95E-02
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Gene type



Gene DE type