co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G23560

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010324: membrane invagination	0.00E+00
2	GO:0010055: atrichoblast differentiation	0.00E+00
3	GO:1902001: fatty acid transmembrane transport	0.00E+00
4	GO:0015690: aluminum cation transport	0.00E+00
5	GO:0043620: regulation of DNA-templated transcription in response to stress	0.00E+00
6	GO:0071456: cellular response to hypoxia	2.07E-09
7	GO:0010482: regulation of epidermal cell division	9.33E-05
8	GO:0032107: regulation of response to nutrient levels	9.33E-05
9	GO:1902600: hydrogen ion transmembrane transport	9.33E-05
10	GO:0048508: embryonic meristem development	9.33E-05
11	GO:0051707: response to other organism	2.00E-04
12	GO:0009945: radial axis specification	2.20E-04
13	GO:0000719: photoreactive repair	2.20E-04
14	GO:0071668: plant-type cell wall assembly	2.20E-04
15	GO:0055088: lipid homeostasis	2.20E-04
16	GO:0015908: fatty acid transport	2.20E-04
17	GO:0044419: interspecies interaction between organisms	2.20E-04
18	GO:2000377: regulation of reactive oxygen species metabolic process	2.93E-04
19	GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	3.67E-04
20	GO:1900055: regulation of leaf senescence	3.67E-04
21	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	3.67E-04
22	GO:0006954: inflammatory response	3.67E-04
23	GO:0051289: protein homotetramerization	5.28E-04
24	GO:0006020: inositol metabolic process	5.28E-04
25	GO:0051567: histone H3-K9 methylation	7.02E-04
26	GO:1901141: regulation of lignin biosynthetic process	7.02E-04
27	GO:0016094: polyprenol biosynthetic process	8.88E-04
28	GO:0034052: positive regulation of plant-type hypersensitive response	8.88E-04
29	GO:0010150: leaf senescence	9.35E-04
30	GO:0009643: photosynthetic acclimation	1.08E-03
31	GO:0009759: indole glucosinolate biosynthetic process	1.08E-03
32	GO:0042372: phylloquinone biosynthetic process	1.29E-03
33	GO:0009942: longitudinal axis specification	1.29E-03
34	GO:0050829: defense response to Gram-negative bacterium	1.51E-03
35	GO:1900057: positive regulation of leaf senescence	1.51E-03
36	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	1.51E-03
37	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	1.51E-03
38	GO:1900056: negative regulation of leaf senescence	1.51E-03
39	GO:0043068: positive regulation of programmed cell death	1.75E-03
40	GO:0016559: peroxisome fission	1.75E-03
41	GO:0009819: drought recovery	1.75E-03
42	GO:0010120: camalexin biosynthetic process	2.00E-03
43	GO:0006997: nucleus organization	2.00E-03
44	GO:0010204: defense response signaling pathway, resistance gene-independent	2.00E-03
45	GO:0010208: pollen wall assembly	2.00E-03
46	GO:0022900: electron transport chain	2.00E-03
47	GO:0010112: regulation of systemic acquired resistance	2.25E-03
48	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	2.52E-03
49	GO:0009870: defense response signaling pathway, resistance gene-dependent	2.80E-03
50	GO:0006032: chitin catabolic process	2.80E-03
51	GO:0051555: flavonol biosynthetic process	2.80E-03
52	GO:0019684: photosynthesis, light reaction	3.09E-03
53	GO:0048765: root hair cell differentiation	3.09E-03
54	GO:0009684: indoleacetic acid biosynthetic process	3.09E-03
55	GO:0009751: response to salicylic acid	3.38E-03
56	GO:0000266: mitochondrial fission	3.38E-03
57	GO:0012501: programmed cell death	3.38E-03
58	GO:0009626: plant-type hypersensitive response	3.54E-03
59	GO:0042742: defense response to bacterium	4.05E-03
60	GO:0006979: response to oxidative stress	4.09E-03
61	GO:0046688: response to copper ion	4.33E-03
62	GO:0009225: nucleotide-sugar metabolic process	4.33E-03
63	GO:0000162: tryptophan biosynthetic process	4.67E-03
64	GO:0006825: copper ion transport	5.36E-03
65	GO:0010026: trichome differentiation	5.36E-03
66	GO:0016998: cell wall macromolecule catabolic process	5.72E-03
67	GO:0009269: response to desiccation	5.72E-03
68	GO:0050832: defense response to fungus	6.05E-03
69	GO:0007005: mitochondrion organization	6.09E-03
70	GO:0009411: response to UV	6.47E-03
71	GO:0009625: response to insect	6.47E-03
72	GO:0006012: galactose metabolic process	6.47E-03
73	GO:0070417: cellular response to cold	7.25E-03
74	GO:0009611: response to wounding	7.33E-03
75	GO:0042391: regulation of membrane potential	7.65E-03
76	GO:0048868: pollen tube development	8.06E-03
77	GO:0009617: response to bacterium	8.21E-03
78	GO:0009646: response to absence of light	8.47E-03
79	GO:0071554: cell wall organization or biogenesis	9.33E-03
80	GO:0006914: autophagy	1.07E-02
81	GO:0071805: potassium ion transmembrane transport	1.11E-02
82	GO:0010029: regulation of seed germination	1.26E-02
83	GO:0009627: systemic acquired resistance	1.31E-02
84	GO:0010200: response to chitin	1.37E-02
85	GO:0009407: toxin catabolic process	1.56E-02
86	GO:0009631: cold acclimation	1.62E-02
87	GO:0048527: lateral root development	1.62E-02
88	GO:0007568: aging	1.62E-02
89	GO:0006897: endocytosis	1.95E-02
90	GO:0009753: response to jasmonic acid	2.10E-02
91	GO:0042546: cell wall biogenesis	2.13E-02
92	GO:0009636: response to toxic substance	2.24E-02
93	GO:0031347: regulation of defense response	2.37E-02
94	GO:0009664: plant-type cell wall organization	2.43E-02
95	GO:0042538: hyperosmotic salinity response	2.43E-02
96	GO:0006813: potassium ion transport	2.55E-02
97	GO:0006486: protein glycosylation	2.55E-02
98	GO:0010224: response to UV-B	2.62E-02
99	GO:0005975: carbohydrate metabolic process	2.95E-02
100	GO:0009624: response to nematode	3.28E-02
101	GO:0009737: response to abscisic acid	4.47E-02
102	GO:0040008: regulation of growth	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0004610: phosphoacetylglucosamine mutase activity	0.00E+00
2	GO:0019707: protein-cysteine S-acyltransferase activity	9.33E-05
3	GO:0047940: glucuronokinase activity	9.33E-05
4	GO:2001147: camalexin binding	9.33E-05
5	GO:0015245: fatty acid transporter activity	9.33E-05
6	GO:2001227: quercitrin binding	9.33E-05
7	GO:0032403: protein complex binding	3.67E-04
8	GO:0004324: ferredoxin-NADP+ reductase activity	3.67E-04
9	GO:0016531: copper chaperone activity	3.67E-04
10	GO:0022890: inorganic cation transmembrane transporter activity	5.28E-04
11	GO:0050378: UDP-glucuronate 4-epimerase activity	7.02E-04
12	GO:0004834: tryptophan synthase activity	7.02E-04
13	GO:0004737: pyruvate decarboxylase activity	7.02E-04
14	GO:0002094: polyprenyltransferase activity	8.88E-04
15	GO:0016773: phosphotransferase activity, alcohol group as acceptor	8.88E-04
16	GO:0030976: thiamine pyrophosphate binding	1.08E-03
17	GO:0003978: UDP-glucose 4-epimerase activity	1.29E-03
18	GO:0043295: glutathione binding	1.51E-03
19	GO:0016831: carboxy-lyase activity	1.51E-03
20	GO:0004033: aldo-keto reductase (NADP) activity	1.75E-03
21	GO:0047893: flavonol 3-O-glucosyltransferase activity	1.75E-03
22	GO:0047617: acyl-CoA hydrolase activity	2.52E-03
23	GO:0004568: chitinase activity	2.80E-03
24	GO:0008559: xenobiotic-transporting ATPase activity	3.09E-03
25	GO:0015386: potassium:proton antiporter activity	3.09E-03
26	GO:0008266: poly(U) RNA binding	4.01E-03
27	GO:0030552: cAMP binding	4.33E-03
28	GO:0030553: cGMP binding	4.33E-03
29	GO:0001046: core promoter sequence-specific DNA binding	5.01E-03
30	GO:0005216: ion channel activity	5.36E-03
31	GO:0015079: potassium ion transmembrane transporter activity	5.36E-03
32	GO:0019706: protein-cysteine S-palmitoyltransferase activity	5.72E-03
33	GO:0035251: UDP-glucosyltransferase activity	5.72E-03
34	GO:0004499: N,N-dimethylaniline monooxygenase activity	6.85E-03
35	GO:0005249: voltage-gated potassium channel activity	7.65E-03
36	GO:0030551: cyclic nucleotide binding	7.65E-03
37	GO:0005199: structural constituent of cell wall	8.06E-03
38	GO:0050662: coenzyme binding	8.47E-03
39	GO:0015299: solute:proton antiporter activity	8.47E-03
40	GO:0004197: cysteine-type endopeptidase activity	9.78E-03
41	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.11E-02
42	GO:0005507: copper ion binding	1.12E-02
43	GO:0016413: O-acetyltransferase activity	1.16E-02
44	GO:0008375: acetylglucosaminyltransferase activity	1.31E-02
45	GO:0030247: polysaccharide binding	1.36E-02
46	GO:0043565: sequence-specific DNA binding	1.55E-02
47	GO:0050897: cobalt ion binding	1.62E-02
48	GO:0050661: NADP binding	1.89E-02
49	GO:0004364: glutathione transferase activity	2.01E-02
50	GO:0009055: electron carrier activity	2.10E-02
51	GO:0051537: 2 iron, 2 sulfur cluster binding	2.18E-02
52	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.08E-02
53	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.08E-02
54	GO:0016874: ligase activity	3.15E-02
55	GO:0016746: transferase activity, transferring acyl groups	3.35E-02
56	GO:0016758: transferase activity, transferring hexosyl groups	3.78E-02
57	GO:0004674: protein serine/threonine kinase activity	4.37E-02
58	GO:0030246: carbohydrate binding	4.65E-02
59	GO:0016301: kinase activity	4.66E-02
60	GO:0008017: microtubule binding	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0000813: ESCRT I complex	1.32E-05
2	GO:0000138: Golgi trans cisterna	9.33E-05
3	GO:0005901: caveola	2.20E-04
4	GO:0009530: primary cell wall	3.67E-04
5	GO:0016021: integral component of membrane	5.86E-04
6	GO:0005777: peroxisome	1.71E-03
7	GO:0000421: autophagosome membrane	1.75E-03
8	GO:0005802: trans-Golgi network	2.84E-03
9	GO:0005794: Golgi apparatus	3.21E-03
10	GO:0005769: early endosome	4.67E-03
11	GO:0005758: mitochondrial intermembrane space	5.01E-03
12	GO:0005741: mitochondrial outer membrane	5.72E-03
13	GO:0031410: cytoplasmic vesicle	6.09E-03
14	GO:0009504: cell plate	8.90E-03
15	GO:0031965: nuclear membrane	8.90E-03
16	GO:0032580: Golgi cisterna membrane	1.07E-02
17	GO:0005778: peroxisomal membrane	1.11E-02
18	GO:0005768: endosome	1.53E-02
19	GO:0000325: plant-type vacuole	1.62E-02
20	GO:0005886: plasma membrane	1.64E-02
21	GO:0005635: nuclear envelope	2.68E-02
22	GO:0005789: endoplasmic reticulum membrane	2.97E-02
23	GO:0009506: plasmodesma	3.02E-02
24	GO:0009706: chloroplast inner membrane	3.28E-02
25	GO:0009543: chloroplast thylakoid lumen	3.85E-02