co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G23540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006983: ER overload response	0.00E+00
2	GO:0090480: purine nucleotide-sugar transmembrane transport	0.00E+00
3	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
4	GO:0032469: endoplasmic reticulum calcium ion homeostasis	7.58E-05
5	GO:1902065: response to L-glutamate	7.58E-05
6	GO:0034975: protein folding in endoplasmic reticulum	7.58E-05
7	GO:0000303: response to superoxide	7.58E-05
8	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	7.58E-05
9	GO:0045087: innate immune response	9.35E-05
10	GO:0009901: anther dehiscence	1.75E-04
11	GO:0009727: detection of ethylene stimulus	1.81E-04
12	GO:0043066: negative regulation of apoptotic process	1.81E-04
13	GO:0080183: response to photooxidative stress	1.81E-04
14	GO:0010155: regulation of proton transport	1.81E-04
15	GO:0009812: flavonoid metabolic process	1.81E-04
16	GO:0015783: GDP-fucose transport	3.05E-04
17	GO:0071323: cellular response to chitin	4.41E-04
18	GO:0006809: nitric oxide biosynthetic process	4.41E-04
19	GO:0045088: regulation of innate immune response	5.87E-04
20	GO:0022622: root system development	5.87E-04
21	GO:0009229: thiamine diphosphate biosynthetic process	7.44E-04
22	GO:0009247: glycolipid biosynthetic process	7.44E-04
23	GO:0009228: thiamine biosynthetic process	9.07E-04
24	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.08E-03
25	GO:0031930: mitochondria-nucleus signaling pathway	1.08E-03
26	GO:0010044: response to aluminum ion	1.26E-03
27	GO:0046470: phosphatidylcholine metabolic process	1.26E-03
28	GO:0019375: galactolipid biosynthetic process	1.46E-03
29	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.46E-03
30	GO:0015780: nucleotide-sugar transport	1.87E-03
31	GO:0042538: hyperosmotic salinity response	2.00E-03
32	GO:0009086: methionine biosynthetic process	2.09E-03
33	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	2.09E-03
34	GO:0043069: negative regulation of programmed cell death	2.32E-03
35	GO:0009089: lysine biosynthetic process via diaminopimelate	2.56E-03
36	GO:0000038: very long-chain fatty acid metabolic process	2.56E-03
37	GO:0012501: programmed cell death	2.80E-03
38	GO:0045037: protein import into chloroplast stroma	2.80E-03
39	GO:0018107: peptidyl-threonine phosphorylation	3.06E-03
40	GO:0010102: lateral root morphogenesis	3.06E-03
41	GO:0006396: RNA processing	3.12E-03
42	GO:0070588: calcium ion transmembrane transport	3.59E-03
43	GO:0009845: seed germination	4.10E-03
44	GO:0080147: root hair cell development	4.15E-03
45	GO:2000377: regulation of reactive oxygen species metabolic process	4.15E-03
46	GO:0009863: salicylic acid mediated signaling pathway	4.15E-03
47	GO:0045333: cellular respiration	4.15E-03
48	GO:0009738: abscisic acid-activated signaling pathway	4.80E-03
49	GO:0071369: cellular response to ethylene stimulus	5.34E-03
50	GO:0009306: protein secretion	5.66E-03
51	GO:0010584: pollen exine formation	5.66E-03
52	GO:0045489: pectin biosynthetic process	6.64E-03
53	GO:0055085: transmembrane transport	6.77E-03
54	GO:0010193: response to ozone	7.69E-03
55	GO:0016032: viral process	8.05E-03
56	GO:0030163: protein catabolic process	8.42E-03
57	GO:0006970: response to osmotic stress	8.68E-03
58	GO:0006464: cellular protein modification process	8.79E-03
59	GO:0010029: regulation of seed germination	1.03E-02
60	GO:0009816: defense response to bacterium, incompatible interaction	1.03E-02
61	GO:0009414: response to water deprivation	1.19E-02
62	GO:0009867: jasmonic acid mediated signaling pathway	1.42E-02
63	GO:0016051: carbohydrate biosynthetic process	1.42E-02
64	GO:0006897: endocytosis	1.60E-02
65	GO:0008643: carbohydrate transport	1.79E-02
66	GO:0009873: ethylene-activated signaling pathway	1.91E-02
67	GO:0031347: regulation of defense response	1.94E-02
68	GO:0009846: pollen germination	1.99E-02
69	GO:0006857: oligopeptide transport	2.20E-02
70	GO:0006096: glycolytic process	2.36E-02
71	GO:0042545: cell wall modification	2.64E-02
72	GO:0018105: peptidyl-serine phosphorylation	2.75E-02
73	GO:0035556: intracellular signal transduction	2.78E-02
74	GO:0009790: embryo development	3.53E-02
75	GO:0016036: cellular response to phosphate starvation	3.78E-02
76	GO:0010150: leaf senescence	3.98E-02
77	GO:0045490: pectin catabolic process	3.98E-02
78	GO:0007166: cell surface receptor signaling pathway	4.37E-02
79	GO:0009617: response to bacterium	4.51E-02

Rank	GO Term	Adjusted P value
1	GO:0050334: thiaminase activity	0.00E+00
2	GO:0047150: betaine-homocysteine S-methyltransferase activity	7.58E-05
3	GO:0046481: digalactosyldiacylglycerol synthase activity	7.58E-05
4	GO:0010285: L,L-diaminopimelate aminotransferase activity	7.58E-05
5	GO:0005457: GDP-fucose transmembrane transporter activity	3.05E-04
6	GO:0035250: UDP-galactosyltransferase activity	4.41E-04
7	GO:0009916: alternative oxidase activity	5.87E-04
8	GO:0004656: procollagen-proline 4-dioxygenase activity	1.08E-03
9	GO:0003950: NAD+ ADP-ribosyltransferase activity	1.08E-03
10	GO:0004525: ribonuclease III activity	1.46E-03
11	GO:0004630: phospholipase D activity	1.66E-03
12	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	1.66E-03
13	GO:0030955: potassium ion binding	2.09E-03
14	GO:0004743: pyruvate kinase activity	2.09E-03
15	GO:0015198: oligopeptide transporter activity	2.80E-03
16	GO:0005262: calcium channel activity	3.06E-03
17	GO:0005388: calcium-transporting ATPase activity	3.06E-03
18	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	3.06E-03
19	GO:0015035: protein disulfide oxidoreductase activity	3.12E-03
20	GO:0008061: chitin binding	3.59E-03
21	GO:0016301: kinase activity	3.73E-03
22	GO:0031418: L-ascorbic acid binding	4.15E-03
23	GO:0004707: MAP kinase activity	4.73E-03
24	GO:0015297: antiporter activity	4.98E-03
25	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	5.03E-03
26	GO:0003756: protein disulfide isomerase activity	5.66E-03
27	GO:0004499: N,N-dimethylaniline monooxygenase activity	5.66E-03
28	GO:0008194: UDP-glycosyltransferase activity	5.83E-03
29	GO:0005515: protein binding	7.71E-03
30	GO:0000287: magnesium ion binding	7.91E-03
31	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	8.42E-03
32	GO:0004674: protein serine/threonine kinase activity	8.92E-03
33	GO:0008483: transaminase activity	9.17E-03
34	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	9.17E-03
35	GO:0043565: sequence-specific DNA binding	9.52E-03
36	GO:0004497: monooxygenase activity	1.00E-02
37	GO:0005509: calcium ion binding	1.11E-02
38	GO:0004004: ATP-dependent RNA helicase activity	1.12E-02
39	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.20E-02
40	GO:0004222: metalloendopeptidase activity	1.28E-02
41	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.42E-02
42	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.51E-02
43	GO:0005524: ATP binding	1.54E-02
44	GO:0050661: NADP binding	1.55E-02
45	GO:0051537: 2 iron, 2 sulfur cluster binding	1.79E-02
46	GO:0045330: aspartyl esterase activity	2.25E-02
47	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.53E-02
48	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.53E-02
49	GO:0016874: ligase activity	2.58E-02
50	GO:0030599: pectinesterase activity	2.58E-02
51	GO:0022857: transmembrane transporter activity	2.58E-02
52	GO:0004386: helicase activity	2.87E-02
53	GO:0016787: hydrolase activity	3.19E-02
54	GO:0030170: pyridoxal phosphate binding	3.41E-02
55	GO:0015144: carbohydrate transmembrane transporter activity	3.59E-02
56	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.78E-02
57	GO:0046910: pectinesterase inhibitor activity	3.78E-02
58	GO:0005351: sugar:proton symporter activity	3.91E-02
59	GO:0005516: calmodulin binding	3.95E-02
60	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0005789: endoplasmic reticulum membrane	2.46E-04
2	GO:0009898: cytoplasmic side of plasma membrane	5.87E-04
3	GO:0016021: integral component of membrane	8.89E-04
4	GO:0016363: nuclear matrix	1.08E-03
5	GO:0005783: endoplasmic reticulum	1.56E-03
6	GO:0030176: integral component of endoplasmic reticulum membrane	3.59E-03
7	GO:0000139: Golgi membrane	4.19E-03
8	GO:0070469: respiratory chain	4.43E-03
9	GO:0071944: cell periphery	8.42E-03
10	GO:0009707: chloroplast outer membrane	1.20E-02
11	GO:0000325: plant-type vacuole	1.33E-02
12	GO:0043231: intracellular membrane-bounded organelle	1.63E-02
13	GO:0005635: nuclear envelope	2.20E-02
14	GO:0016020: membrane	2.35E-02
15	GO:0005737: cytoplasm	2.56E-02
16	GO:0009706: chloroplast inner membrane	2.69E-02
17	GO:0009543: chloroplast thylakoid lumen	3.16E-02
18	GO:0005886: plasma membrane	3.61E-02