GO Enrichment Analysis of Co-expressed Genes with
AT3G23090
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:1905157: positive regulation of photosynthesis | 0.00E+00 |
2 | GO:0097275: cellular ammonia homeostasis | 0.00E+00 |
3 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
4 | GO:0051924: regulation of calcium ion transport | 0.00E+00 |
5 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
6 | GO:0033614: chloroplast proton-transporting ATP synthase complex assembly | 0.00E+00 |
7 | GO:0046471: phosphatidylglycerol metabolic process | 0.00E+00 |
8 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
9 | GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process | 0.00E+00 |
10 | GO:0009773: photosynthetic electron transport in photosystem I | 7.43E-09 |
11 | GO:0010207: photosystem II assembly | 1.56E-06 |
12 | GO:0015995: chlorophyll biosynthetic process | 3.63E-06 |
13 | GO:0015979: photosynthesis | 2.91E-05 |
14 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 2.99E-05 |
15 | GO:0071484: cellular response to light intensity | 2.99E-05 |
16 | GO:0015994: chlorophyll metabolic process | 5.37E-05 |
17 | GO:0042549: photosystem II stabilization | 1.23E-04 |
18 | GO:0009955: adaxial/abaxial pattern specification | 1.69E-04 |
19 | GO:1901259: chloroplast rRNA processing | 1.69E-04 |
20 | GO:0006353: DNA-templated transcription, termination | 2.80E-04 |
21 | GO:0010028: xanthophyll cycle | 2.84E-04 |
22 | GO:0034337: RNA folding | 2.84E-04 |
23 | GO:0005991: trehalose metabolic process | 2.84E-04 |
24 | GO:0080112: seed growth | 2.84E-04 |
25 | GO:0005980: glycogen catabolic process | 2.84E-04 |
26 | GO:1905039: carboxylic acid transmembrane transport | 2.84E-04 |
27 | GO:1905200: gibberellic acid transmembrane transport | 2.84E-04 |
28 | GO:0032544: plastid translation | 3.44E-04 |
29 | GO:0009657: plastid organization | 3.44E-04 |
30 | GO:0006098: pentose-phosphate shunt | 4.15E-04 |
31 | GO:0016122: xanthophyll metabolic process | 6.25E-04 |
32 | GO:0080029: cellular response to boron-containing substance levels | 6.25E-04 |
33 | GO:0071457: cellular response to ozone | 6.25E-04 |
34 | GO:0018026: peptidyl-lysine monomethylation | 6.25E-04 |
35 | GO:0006094: gluconeogenesis | 8.57E-04 |
36 | GO:0006696: ergosterol biosynthetic process | 1.01E-03 |
37 | GO:0090391: granum assembly | 1.01E-03 |
38 | GO:0046713: borate transport | 1.45E-03 |
39 | GO:1902358: sulfate transmembrane transport | 1.45E-03 |
40 | GO:0045338: farnesyl diphosphate metabolic process | 1.45E-03 |
41 | GO:0006166: purine ribonucleoside salvage | 1.45E-03 |
42 | GO:0006020: inositol metabolic process | 1.45E-03 |
43 | GO:0009152: purine ribonucleotide biosynthetic process | 1.45E-03 |
44 | GO:0046653: tetrahydrofolate metabolic process | 1.45E-03 |
45 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.45E-03 |
46 | GO:0010731: protein glutathionylation | 1.45E-03 |
47 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.45E-03 |
48 | GO:0006168: adenine salvage | 1.45E-03 |
49 | GO:0010114: response to red light | 1.46E-03 |
50 | GO:0061077: chaperone-mediated protein folding | 1.60E-03 |
51 | GO:0055114: oxidation-reduction process | 1.92E-03 |
52 | GO:0071486: cellular response to high light intensity | 1.94E-03 |
53 | GO:0009765: photosynthesis, light harvesting | 1.94E-03 |
54 | GO:0010107: potassium ion import | 1.94E-03 |
55 | GO:0006021: inositol biosynthetic process | 1.94E-03 |
56 | GO:0044209: AMP salvage | 2.48E-03 |
57 | GO:0071493: cellular response to UV-B | 2.48E-03 |
58 | GO:0098719: sodium ion import across plasma membrane | 2.48E-03 |
59 | GO:0006564: L-serine biosynthetic process | 2.48E-03 |
60 | GO:0006096: glycolytic process | 2.64E-03 |
61 | GO:0009643: photosynthetic acclimation | 3.06E-03 |
62 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 3.06E-03 |
63 | GO:0006751: glutathione catabolic process | 3.06E-03 |
64 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 3.06E-03 |
65 | GO:1902456: regulation of stomatal opening | 3.06E-03 |
66 | GO:0000741: karyogamy | 3.06E-03 |
67 | GO:0009228: thiamine biosynthetic process | 3.06E-03 |
68 | GO:0046855: inositol phosphate dephosphorylation | 3.06E-03 |
69 | GO:0010190: cytochrome b6f complex assembly | 3.06E-03 |
70 | GO:0006810: transport | 3.12E-03 |
71 | GO:0032502: developmental process | 3.43E-03 |
72 | GO:0010196: nonphotochemical quenching | 4.34E-03 |
73 | GO:0008272: sulfate transport | 4.34E-03 |
74 | GO:0009769: photosynthesis, light harvesting in photosystem II | 4.34E-03 |
75 | GO:0009645: response to low light intensity stimulus | 4.34E-03 |
76 | GO:0055075: potassium ion homeostasis | 5.03E-03 |
77 | GO:0052543: callose deposition in cell wall | 5.03E-03 |
78 | GO:0048564: photosystem I assembly | 5.03E-03 |
79 | GO:0042255: ribosome assembly | 5.03E-03 |
80 | GO:0070413: trehalose metabolism in response to stress | 5.03E-03 |
81 | GO:0010078: maintenance of root meristem identity | 5.03E-03 |
82 | GO:0043562: cellular response to nitrogen levels | 5.77E-03 |
83 | GO:0015996: chlorophyll catabolic process | 5.77E-03 |
84 | GO:0019430: removal of superoxide radicals | 5.77E-03 |
85 | GO:0009813: flavonoid biosynthetic process | 6.37E-03 |
86 | GO:0009821: alkaloid biosynthetic process | 6.54E-03 |
87 | GO:0010206: photosystem II repair | 6.54E-03 |
88 | GO:0090333: regulation of stomatal closure | 6.54E-03 |
89 | GO:0006783: heme biosynthetic process | 6.54E-03 |
90 | GO:0051453: regulation of intracellular pH | 7.35E-03 |
91 | GO:0005982: starch metabolic process | 7.35E-03 |
92 | GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | 7.35E-03 |
93 | GO:0009641: shade avoidance | 8.19E-03 |
94 | GO:0006782: protoporphyrinogen IX biosynthetic process | 8.19E-03 |
95 | GO:0018119: peptidyl-cysteine S-nitrosylation | 9.06E-03 |
96 | GO:0009684: indoleacetic acid biosynthetic process | 9.06E-03 |
97 | GO:0015770: sucrose transport | 9.06E-03 |
98 | GO:0006415: translational termination | 9.06E-03 |
99 | GO:0006790: sulfur compound metabolic process | 9.96E-03 |
100 | GO:0016024: CDP-diacylglycerol biosynthetic process | 9.96E-03 |
101 | GO:0046686: response to cadmium ion | 1.06E-02 |
102 | GO:0010588: cotyledon vascular tissue pattern formation | 1.09E-02 |
103 | GO:0030048: actin filament-based movement | 1.09E-02 |
104 | GO:0009658: chloroplast organization | 1.17E-02 |
105 | GO:0010223: secondary shoot formation | 1.19E-02 |
106 | GO:0048467: gynoecium development | 1.19E-02 |
107 | GO:0010143: cutin biosynthetic process | 1.19E-02 |
108 | GO:0019253: reductive pentose-phosphate cycle | 1.19E-02 |
109 | GO:0046854: phosphatidylinositol phosphorylation | 1.29E-02 |
110 | GO:0009901: anther dehiscence | 1.29E-02 |
111 | GO:0006364: rRNA processing | 1.34E-02 |
112 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.39E-02 |
113 | GO:0005992: trehalose biosynthetic process | 1.50E-02 |
114 | GO:0080147: root hair cell development | 1.50E-02 |
115 | GO:0080167: response to karrikin | 1.54E-02 |
116 | GO:0006418: tRNA aminoacylation for protein translation | 1.60E-02 |
117 | GO:0048367: shoot system development | 1.64E-02 |
118 | GO:0019915: lipid storage | 1.72E-02 |
119 | GO:0009269: response to desiccation | 1.72E-02 |
120 | GO:0016114: terpenoid biosynthetic process | 1.72E-02 |
121 | GO:0016226: iron-sulfur cluster assembly | 1.83E-02 |
122 | GO:0006730: one-carbon metabolic process | 1.83E-02 |
123 | GO:0030433: ubiquitin-dependent ERAD pathway | 1.83E-02 |
124 | GO:0009686: gibberellin biosynthetic process | 1.95E-02 |
125 | GO:0016117: carotenoid biosynthetic process | 2.19E-02 |
126 | GO:0000413: protein peptidyl-prolyl isomerization | 2.31E-02 |
127 | GO:0010087: phloem or xylem histogenesis | 2.31E-02 |
128 | GO:0080022: primary root development | 2.31E-02 |
129 | GO:0032259: methylation | 2.38E-02 |
130 | GO:0010197: polar nucleus fusion | 2.44E-02 |
131 | GO:0010182: sugar mediated signaling pathway | 2.44E-02 |
132 | GO:0010268: brassinosteroid homeostasis | 2.44E-02 |
133 | GO:0071472: cellular response to salt stress | 2.44E-02 |
134 | GO:0009958: positive gravitropism | 2.44E-02 |
135 | GO:0006885: regulation of pH | 2.44E-02 |
136 | GO:0009058: biosynthetic process | 2.53E-02 |
137 | GO:0006814: sodium ion transport | 2.57E-02 |
138 | GO:0019252: starch biosynthetic process | 2.70E-02 |
139 | GO:0009851: auxin biosynthetic process | 2.70E-02 |
140 | GO:0048825: cotyledon development | 2.70E-02 |
141 | GO:0016132: brassinosteroid biosynthetic process | 2.83E-02 |
142 | GO:0009630: gravitropism | 2.97E-02 |
143 | GO:1901657: glycosyl compound metabolic process | 3.11E-02 |
144 | GO:0016125: sterol metabolic process | 3.25E-02 |
145 | GO:0010027: thylakoid membrane organization | 3.68E-02 |
146 | GO:0016126: sterol biosynthetic process | 3.68E-02 |
147 | GO:0009607: response to biotic stimulus | 3.83E-02 |
148 | GO:0042128: nitrate assimilation | 3.98E-02 |
149 | GO:0018298: protein-chromophore linkage | 4.45E-02 |
150 | GO:0009817: defense response to fungus, incompatible interaction | 4.45E-02 |
151 | GO:0048481: plant ovule development | 4.45E-02 |
152 | GO:0009735: response to cytokinin | 4.57E-02 |
153 | GO:0009832: plant-type cell wall biogenesis | 4.60E-02 |
154 | GO:0010218: response to far red light | 4.76E-02 |
155 | GO:0048527: lateral root development | 4.93E-02 |
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
2 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
3 | GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity | 0.00E+00 |
4 | GO:0090711: FMN hydrolase activity | 0.00E+00 |
5 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
6 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
7 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 5.37E-05 |
8 | GO:0005528: FK506 binding | 9.80E-05 |
9 | GO:0004332: fructose-bisphosphate aldolase activity | 1.23E-04 |
10 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.57E-04 |
11 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 2.84E-04 |
12 | GO:0045486: naringenin 3-dioxygenase activity | 2.84E-04 |
13 | GO:1905201: gibberellin transmembrane transporter activity | 2.84E-04 |
14 | GO:0008184: glycogen phosphorylase activity | 2.84E-04 |
15 | GO:0051777: ent-kaurenoate oxidase activity | 2.84E-04 |
16 | GO:0004856: xylulokinase activity | 2.84E-04 |
17 | GO:0004853: uroporphyrinogen decarboxylase activity | 2.84E-04 |
18 | GO:0004645: phosphorylase activity | 2.84E-04 |
19 | GO:0034256: chlorophyll(ide) b reductase activity | 2.84E-04 |
20 | GO:0015168: glycerol transmembrane transporter activity | 2.84E-04 |
21 | GO:0047746: chlorophyllase activity | 6.25E-04 |
22 | GO:0004618: phosphoglycerate kinase activity | 6.25E-04 |
23 | GO:0003839: gamma-glutamylcyclotransferase activity | 6.25E-04 |
24 | GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity | 6.25E-04 |
25 | GO:0004617: phosphoglycerate dehydrogenase activity | 6.25E-04 |
26 | GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity | 6.25E-04 |
27 | GO:0052832: inositol monophosphate 3-phosphatase activity | 6.25E-04 |
28 | GO:0033201: alpha-1,4-glucan synthase activity | 6.25E-04 |
29 | GO:0008934: inositol monophosphate 1-phosphatase activity | 6.25E-04 |
30 | GO:0052833: inositol monophosphate 4-phosphatase activity | 6.25E-04 |
31 | GO:0080097: L-tryptophan:pyruvate aminotransferase activity | 6.25E-04 |
32 | GO:0016630: protochlorophyllide reductase activity | 6.25E-04 |
33 | GO:0019172: glyoxalase III activity | 6.25E-04 |
34 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 6.25E-04 |
35 | GO:0047372: acylglycerol lipase activity | 6.61E-04 |
36 | GO:0015386: potassium:proton antiporter activity | 6.61E-04 |
37 | GO:0016491: oxidoreductase activity | 7.73E-04 |
38 | GO:0019843: rRNA binding | 7.98E-04 |
39 | GO:0004751: ribose-5-phosphate isomerase activity | 1.01E-03 |
40 | GO:0045174: glutathione dehydrogenase (ascorbate) activity | 1.01E-03 |
41 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 1.01E-03 |
42 | GO:0008864: formyltetrahydrofolate deformylase activity | 1.01E-03 |
43 | GO:0004373: glycogen (starch) synthase activity | 1.01E-03 |
44 | GO:0002161: aminoacyl-tRNA editing activity | 1.01E-03 |
45 | GO:0031409: pigment binding | 1.19E-03 |
46 | GO:0046715: borate transmembrane transporter activity | 1.45E-03 |
47 | GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity | 1.45E-03 |
48 | GO:0019201: nucleotide kinase activity | 1.45E-03 |
49 | GO:0016851: magnesium chelatase activity | 1.45E-03 |
50 | GO:0003999: adenine phosphoribosyltransferase activity | 1.45E-03 |
51 | GO:0016149: translation release factor activity, codon specific | 1.45E-03 |
52 | GO:0022890: inorganic cation transmembrane transporter activity | 1.45E-03 |
53 | GO:0015204: urea transmembrane transporter activity | 1.94E-03 |
54 | GO:0016279: protein-lysine N-methyltransferase activity | 1.94E-03 |
55 | GO:0045430: chalcone isomerase activity | 1.94E-03 |
56 | GO:0009011: starch synthase activity | 1.94E-03 |
57 | GO:0003727: single-stranded RNA binding | 2.07E-03 |
58 | GO:0016846: carbon-sulfur lyase activity | 2.48E-03 |
59 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 2.48E-03 |
60 | GO:0003959: NADPH dehydrogenase activity | 2.48E-03 |
61 | GO:0015081: sodium ion transmembrane transporter activity | 3.06E-03 |
62 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 3.06E-03 |
63 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 3.06E-03 |
64 | GO:0004784: superoxide dismutase activity | 3.06E-03 |
65 | GO:0004462: lactoylglutathione lyase activity | 3.06E-03 |
66 | GO:0048038: quinone binding | 3.22E-03 |
67 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 3.68E-03 |
68 | GO:0004017: adenylate kinase activity | 3.68E-03 |
69 | GO:0016791: phosphatase activity | 3.89E-03 |
70 | GO:0016168: chlorophyll binding | 4.91E-03 |
71 | GO:0008271: secondary active sulfate transmembrane transporter activity | 5.77E-03 |
72 | GO:0003747: translation release factor activity | 6.54E-03 |
73 | GO:0016844: strictosidine synthase activity | 7.35E-03 |
74 | GO:0008559: xenobiotic-transporting ATPase activity | 9.06E-03 |
75 | GO:0008515: sucrose transmembrane transporter activity | 9.06E-03 |
76 | GO:0015116: sulfate transmembrane transporter activity | 9.96E-03 |
77 | GO:0000049: tRNA binding | 9.96E-03 |
78 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.07E-02 |
79 | GO:0043621: protein self-association | 1.07E-02 |
80 | GO:0004089: carbonate dehydratase activity | 1.09E-02 |
81 | GO:0031072: heat shock protein binding | 1.09E-02 |
82 | GO:0003725: double-stranded RNA binding | 1.09E-02 |
83 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.09E-02 |
84 | GO:0008168: methyltransferase activity | 1.12E-02 |
85 | GO:0003774: motor activity | 1.19E-02 |
86 | GO:0008266: poly(U) RNA binding | 1.19E-02 |
87 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 1.19E-02 |
88 | GO:0016788: hydrolase activity, acting on ester bonds | 1.20E-02 |
89 | GO:0051119: sugar transmembrane transporter activity | 1.29E-02 |
90 | GO:0051536: iron-sulfur cluster binding | 1.50E-02 |
91 | GO:0031418: L-ascorbic acid binding | 1.50E-02 |
92 | GO:0015079: potassium ion transmembrane transporter activity | 1.60E-02 |
93 | GO:0004812: aminoacyl-tRNA ligase activity | 2.19E-02 |
94 | GO:0003713: transcription coactivator activity | 2.44E-02 |
95 | GO:0015299: solute:proton antiporter activity | 2.57E-02 |
96 | GO:0015385: sodium:proton antiporter activity | 3.11E-02 |
97 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 3.39E-02 |
98 | GO:0008237: metallopeptidase activity | 3.39E-02 |
99 | GO:0016597: amino acid binding | 3.54E-02 |
100 | GO:0015250: water channel activity | 3.68E-02 |
101 | GO:0102483: scopolin beta-glucosidase activity | 4.13E-02 |
102 | GO:0015238: drug transmembrane transporter activity | 4.60E-02 |
103 | GO:0004222: metalloendopeptidase activity | 4.76E-02 |
104 | GO:0003824: catalytic activity | 4.85E-02 |
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0009571: proplastid stroma | 0.00E+00 |
2 | GO:0009575: chromoplast stroma | 0.00E+00 |
3 | GO:0009507: chloroplast | 1.65E-36 |
4 | GO:0009535: chloroplast thylakoid membrane | 1.11E-28 |
5 | GO:0009534: chloroplast thylakoid | 8.23E-22 |
6 | GO:0009570: chloroplast stroma | 2.07E-17 |
7 | GO:0009579: thylakoid | 2.53E-15 |
8 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.03E-11 |
9 | GO:0031977: thylakoid lumen | 2.00E-11 |
10 | GO:0009543: chloroplast thylakoid lumen | 7.17E-11 |
11 | GO:0009941: chloroplast envelope | 9.71E-10 |
12 | GO:0031969: chloroplast membrane | 1.95E-05 |
13 | GO:0030095: chloroplast photosystem II | 5.88E-05 |
14 | GO:0010287: plastoglobule | 1.08E-04 |
15 | GO:0009547: plastid ribosome | 2.84E-04 |
16 | GO:0010007: magnesium chelatase complex | 1.01E-03 |
17 | GO:0030076: light-harvesting complex | 1.07E-03 |
18 | GO:0009654: photosystem II oxygen evolving complex | 1.45E-03 |
19 | GO:0042651: thylakoid membrane | 1.45E-03 |
20 | GO:0009517: PSII associated light-harvesting complex II | 1.94E-03 |
21 | GO:0009523: photosystem II | 3.01E-03 |
22 | GO:0019898: extrinsic component of membrane | 3.01E-03 |
23 | GO:0009840: chloroplastic endopeptidase Clp complex | 3.68E-03 |
24 | GO:0009501: amyloplast | 5.03E-03 |
25 | GO:0005763: mitochondrial small ribosomal subunit | 6.54E-03 |
26 | GO:0016459: myosin complex | 8.19E-03 |
27 | GO:0000311: plastid large ribosomal subunit | 9.96E-03 |
28 | GO:0032040: small-subunit processome | 9.96E-03 |
29 | GO:0009508: plastid chromosome | 1.09E-02 |
30 | GO:0005840: ribosome | 1.54E-02 |
31 | GO:0015935: small ribosomal subunit | 1.72E-02 |
32 | GO:0009532: plastid stroma | 1.72E-02 |
33 | GO:0009522: photosystem I | 2.57E-02 |
34 | GO:0010319: stromule | 3.39E-02 |
35 | GO:0009295: nucleoid | 3.39E-02 |
36 | GO:0005887: integral component of plasma membrane | 3.68E-02 |
37 | GO:0000325: plant-type vacuole | 4.93E-02 |