Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G23090

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905157: positive regulation of photosynthesis0.00E+00
2GO:0097275: cellular ammonia homeostasis0.00E+00
3GO:1901918: negative regulation of exoribonuclease activity0.00E+00
4GO:0051924: regulation of calcium ion transport0.00E+00
5GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
6GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
7GO:0046471: phosphatidylglycerol metabolic process0.00E+00
8GO:0018023: peptidyl-lysine trimethylation0.00E+00
9GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
10GO:0009773: photosynthetic electron transport in photosystem I7.43E-09
11GO:0010207: photosystem II assembly1.56E-06
12GO:0015995: chlorophyll biosynthetic process3.63E-06
13GO:0015979: photosynthesis2.91E-05
14GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.99E-05
15GO:0071484: cellular response to light intensity2.99E-05
16GO:0015994: chlorophyll metabolic process5.37E-05
17GO:0042549: photosystem II stabilization1.23E-04
18GO:0009955: adaxial/abaxial pattern specification1.69E-04
19GO:1901259: chloroplast rRNA processing1.69E-04
20GO:0006353: DNA-templated transcription, termination2.80E-04
21GO:0010028: xanthophyll cycle2.84E-04
22GO:0034337: RNA folding2.84E-04
23GO:0005991: trehalose metabolic process2.84E-04
24GO:0080112: seed growth2.84E-04
25GO:0005980: glycogen catabolic process2.84E-04
26GO:1905039: carboxylic acid transmembrane transport2.84E-04
27GO:1905200: gibberellic acid transmembrane transport2.84E-04
28GO:0032544: plastid translation3.44E-04
29GO:0009657: plastid organization3.44E-04
30GO:0006098: pentose-phosphate shunt4.15E-04
31GO:0016122: xanthophyll metabolic process6.25E-04
32GO:0080029: cellular response to boron-containing substance levels6.25E-04
33GO:0071457: cellular response to ozone6.25E-04
34GO:0018026: peptidyl-lysine monomethylation6.25E-04
35GO:0006094: gluconeogenesis8.57E-04
36GO:0006696: ergosterol biosynthetic process1.01E-03
37GO:0090391: granum assembly1.01E-03
38GO:0046713: borate transport1.45E-03
39GO:1902358: sulfate transmembrane transport1.45E-03
40GO:0045338: farnesyl diphosphate metabolic process1.45E-03
41GO:0006166: purine ribonucleoside salvage1.45E-03
42GO:0006020: inositol metabolic process1.45E-03
43GO:0009152: purine ribonucleotide biosynthetic process1.45E-03
44GO:0046653: tetrahydrofolate metabolic process1.45E-03
45GO:0009052: pentose-phosphate shunt, non-oxidative branch1.45E-03
46GO:0010731: protein glutathionylation1.45E-03
47GO:0009768: photosynthesis, light harvesting in photosystem I1.45E-03
48GO:0006168: adenine salvage1.45E-03
49GO:0010114: response to red light1.46E-03
50GO:0061077: chaperone-mediated protein folding1.60E-03
51GO:0055114: oxidation-reduction process1.92E-03
52GO:0071486: cellular response to high light intensity1.94E-03
53GO:0009765: photosynthesis, light harvesting1.94E-03
54GO:0010107: potassium ion import1.94E-03
55GO:0006021: inositol biosynthetic process1.94E-03
56GO:0044209: AMP salvage2.48E-03
57GO:0071493: cellular response to UV-B2.48E-03
58GO:0098719: sodium ion import across plasma membrane2.48E-03
59GO:0006564: L-serine biosynthetic process2.48E-03
60GO:0006096: glycolytic process2.64E-03
61GO:0009643: photosynthetic acclimation3.06E-03
62GO:0010304: PSII associated light-harvesting complex II catabolic process3.06E-03
63GO:0006751: glutathione catabolic process3.06E-03
64GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.06E-03
65GO:1902456: regulation of stomatal opening3.06E-03
66GO:0000741: karyogamy3.06E-03
67GO:0009228: thiamine biosynthetic process3.06E-03
68GO:0046855: inositol phosphate dephosphorylation3.06E-03
69GO:0010190: cytochrome b6f complex assembly3.06E-03
70GO:0006810: transport3.12E-03
71GO:0032502: developmental process3.43E-03
72GO:0010196: nonphotochemical quenching4.34E-03
73GO:0008272: sulfate transport4.34E-03
74GO:0009769: photosynthesis, light harvesting in photosystem II4.34E-03
75GO:0009645: response to low light intensity stimulus4.34E-03
76GO:0055075: potassium ion homeostasis5.03E-03
77GO:0052543: callose deposition in cell wall5.03E-03
78GO:0048564: photosystem I assembly5.03E-03
79GO:0042255: ribosome assembly5.03E-03
80GO:0070413: trehalose metabolism in response to stress5.03E-03
81GO:0010078: maintenance of root meristem identity5.03E-03
82GO:0043562: cellular response to nitrogen levels5.77E-03
83GO:0015996: chlorophyll catabolic process5.77E-03
84GO:0019430: removal of superoxide radicals5.77E-03
85GO:0009813: flavonoid biosynthetic process6.37E-03
86GO:0009821: alkaloid biosynthetic process6.54E-03
87GO:0010206: photosystem II repair6.54E-03
88GO:0090333: regulation of stomatal closure6.54E-03
89GO:0006783: heme biosynthetic process6.54E-03
90GO:0051453: regulation of intracellular pH7.35E-03
91GO:0005982: starch metabolic process7.35E-03
92GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process7.35E-03
93GO:0009641: shade avoidance8.19E-03
94GO:0006782: protoporphyrinogen IX biosynthetic process8.19E-03
95GO:0018119: peptidyl-cysteine S-nitrosylation9.06E-03
96GO:0009684: indoleacetic acid biosynthetic process9.06E-03
97GO:0015770: sucrose transport9.06E-03
98GO:0006415: translational termination9.06E-03
99GO:0006790: sulfur compound metabolic process9.96E-03
100GO:0016024: CDP-diacylglycerol biosynthetic process9.96E-03
101GO:0046686: response to cadmium ion1.06E-02
102GO:0010588: cotyledon vascular tissue pattern formation1.09E-02
103GO:0030048: actin filament-based movement1.09E-02
104GO:0009658: chloroplast organization1.17E-02
105GO:0010223: secondary shoot formation1.19E-02
106GO:0048467: gynoecium development1.19E-02
107GO:0010143: cutin biosynthetic process1.19E-02
108GO:0019253: reductive pentose-phosphate cycle1.19E-02
109GO:0046854: phosphatidylinositol phosphorylation1.29E-02
110GO:0009901: anther dehiscence1.29E-02
111GO:0006364: rRNA processing1.34E-02
112GO:0006636: unsaturated fatty acid biosynthetic process1.39E-02
113GO:0005992: trehalose biosynthetic process1.50E-02
114GO:0080147: root hair cell development1.50E-02
115GO:0080167: response to karrikin1.54E-02
116GO:0006418: tRNA aminoacylation for protein translation1.60E-02
117GO:0048367: shoot system development1.64E-02
118GO:0019915: lipid storage1.72E-02
119GO:0009269: response to desiccation1.72E-02
120GO:0016114: terpenoid biosynthetic process1.72E-02
121GO:0016226: iron-sulfur cluster assembly1.83E-02
122GO:0006730: one-carbon metabolic process1.83E-02
123GO:0030433: ubiquitin-dependent ERAD pathway1.83E-02
124GO:0009686: gibberellin biosynthetic process1.95E-02
125GO:0016117: carotenoid biosynthetic process2.19E-02
126GO:0000413: protein peptidyl-prolyl isomerization2.31E-02
127GO:0010087: phloem or xylem histogenesis2.31E-02
128GO:0080022: primary root development2.31E-02
129GO:0032259: methylation2.38E-02
130GO:0010197: polar nucleus fusion2.44E-02
131GO:0010182: sugar mediated signaling pathway2.44E-02
132GO:0010268: brassinosteroid homeostasis2.44E-02
133GO:0071472: cellular response to salt stress2.44E-02
134GO:0009958: positive gravitropism2.44E-02
135GO:0006885: regulation of pH2.44E-02
136GO:0009058: biosynthetic process2.53E-02
137GO:0006814: sodium ion transport2.57E-02
138GO:0019252: starch biosynthetic process2.70E-02
139GO:0009851: auxin biosynthetic process2.70E-02
140GO:0048825: cotyledon development2.70E-02
141GO:0016132: brassinosteroid biosynthetic process2.83E-02
142GO:0009630: gravitropism2.97E-02
143GO:1901657: glycosyl compound metabolic process3.11E-02
144GO:0016125: sterol metabolic process3.25E-02
145GO:0010027: thylakoid membrane organization3.68E-02
146GO:0016126: sterol biosynthetic process3.68E-02
147GO:0009607: response to biotic stimulus3.83E-02
148GO:0042128: nitrate assimilation3.98E-02
149GO:0018298: protein-chromophore linkage4.45E-02
150GO:0009817: defense response to fungus, incompatible interaction4.45E-02
151GO:0048481: plant ovule development4.45E-02
152GO:0009735: response to cytokinin4.57E-02
153GO:0009832: plant-type cell wall biogenesis4.60E-02
154GO:0010218: response to far red light4.76E-02
155GO:0048527: lateral root development4.93E-02
RankGO TermAdjusted P value
1GO:0046408: chlorophyll synthetase activity0.00E+00
2GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
3GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
4GO:0090711: FMN hydrolase activity0.00E+00
5GO:0046422: violaxanthin de-epoxidase activity0.00E+00
6GO:0004822: isoleucine-tRNA ligase activity0.00E+00
7GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor5.37E-05
8GO:0005528: FK506 binding9.80E-05
9GO:0004332: fructose-bisphosphate aldolase activity1.23E-04
10GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.57E-04
11GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity2.84E-04
12GO:0045486: naringenin 3-dioxygenase activity2.84E-04
13GO:1905201: gibberellin transmembrane transporter activity2.84E-04
14GO:0008184: glycogen phosphorylase activity2.84E-04
15GO:0051777: ent-kaurenoate oxidase activity2.84E-04
16GO:0004856: xylulokinase activity2.84E-04
17GO:0004853: uroporphyrinogen decarboxylase activity2.84E-04
18GO:0004645: phosphorylase activity2.84E-04
19GO:0034256: chlorophyll(ide) b reductase activity2.84E-04
20GO:0015168: glycerol transmembrane transporter activity2.84E-04
21GO:0047746: chlorophyllase activity6.25E-04
22GO:0004618: phosphoglycerate kinase activity6.25E-04
23GO:0003839: gamma-glutamylcyclotransferase activity6.25E-04
24GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity6.25E-04
25GO:0004617: phosphoglycerate dehydrogenase activity6.25E-04
26GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity6.25E-04
27GO:0052832: inositol monophosphate 3-phosphatase activity6.25E-04
28GO:0033201: alpha-1,4-glucan synthase activity6.25E-04
29GO:0008934: inositol monophosphate 1-phosphatase activity6.25E-04
30GO:0052833: inositol monophosphate 4-phosphatase activity6.25E-04
31GO:0080097: L-tryptophan:pyruvate aminotransferase activity6.25E-04
32GO:0016630: protochlorophyllide reductase activity6.25E-04
33GO:0019172: glyoxalase III activity6.25E-04
34GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.25E-04
35GO:0047372: acylglycerol lipase activity6.61E-04
36GO:0015386: potassium:proton antiporter activity6.61E-04
37GO:0016491: oxidoreductase activity7.73E-04
38GO:0019843: rRNA binding7.98E-04
39GO:0004751: ribose-5-phosphate isomerase activity1.01E-03
40GO:0045174: glutathione dehydrogenase (ascorbate) activity1.01E-03
41GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.01E-03
42GO:0008864: formyltetrahydrofolate deformylase activity1.01E-03
43GO:0004373: glycogen (starch) synthase activity1.01E-03
44GO:0002161: aminoacyl-tRNA editing activity1.01E-03
45GO:0031409: pigment binding1.19E-03
46GO:0046715: borate transmembrane transporter activity1.45E-03
47GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity1.45E-03
48GO:0019201: nucleotide kinase activity1.45E-03
49GO:0016851: magnesium chelatase activity1.45E-03
50GO:0003999: adenine phosphoribosyltransferase activity1.45E-03
51GO:0016149: translation release factor activity, codon specific1.45E-03
52GO:0022890: inorganic cation transmembrane transporter activity1.45E-03
53GO:0015204: urea transmembrane transporter activity1.94E-03
54GO:0016279: protein-lysine N-methyltransferase activity1.94E-03
55GO:0045430: chalcone isomerase activity1.94E-03
56GO:0009011: starch synthase activity1.94E-03
57GO:0003727: single-stranded RNA binding2.07E-03
58GO:0016846: carbon-sulfur lyase activity2.48E-03
59GO:0016773: phosphotransferase activity, alcohol group as acceptor2.48E-03
60GO:0003959: NADPH dehydrogenase activity2.48E-03
61GO:0015081: sodium ion transmembrane transporter activity3.06E-03
62GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.06E-03
63GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.06E-03
64GO:0004784: superoxide dismutase activity3.06E-03
65GO:0004462: lactoylglutathione lyase activity3.06E-03
66GO:0048038: quinone binding3.22E-03
67GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.68E-03
68GO:0004017: adenylate kinase activity3.68E-03
69GO:0016791: phosphatase activity3.89E-03
70GO:0016168: chlorophyll binding4.91E-03
71GO:0008271: secondary active sulfate transmembrane transporter activity5.77E-03
72GO:0003747: translation release factor activity6.54E-03
73GO:0016844: strictosidine synthase activity7.35E-03
74GO:0008559: xenobiotic-transporting ATPase activity9.06E-03
75GO:0008515: sucrose transmembrane transporter activity9.06E-03
76GO:0015116: sulfate transmembrane transporter activity9.96E-03
77GO:0000049: tRNA binding9.96E-03
78GO:0051537: 2 iron, 2 sulfur cluster binding1.07E-02
79GO:0043621: protein self-association1.07E-02
80GO:0004089: carbonate dehydratase activity1.09E-02
81GO:0031072: heat shock protein binding1.09E-02
82GO:0003725: double-stranded RNA binding1.09E-02
83GO:0004022: alcohol dehydrogenase (NAD) activity1.09E-02
84GO:0008168: methyltransferase activity1.12E-02
85GO:0003774: motor activity1.19E-02
86GO:0008266: poly(U) RNA binding1.19E-02
87GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.19E-02
88GO:0016788: hydrolase activity, acting on ester bonds1.20E-02
89GO:0051119: sugar transmembrane transporter activity1.29E-02
90GO:0051536: iron-sulfur cluster binding1.50E-02
91GO:0031418: L-ascorbic acid binding1.50E-02
92GO:0015079: potassium ion transmembrane transporter activity1.60E-02
93GO:0004812: aminoacyl-tRNA ligase activity2.19E-02
94GO:0003713: transcription coactivator activity2.44E-02
95GO:0015299: solute:proton antiporter activity2.57E-02
96GO:0015385: sodium:proton antiporter activity3.11E-02
97GO:0016722: oxidoreductase activity, oxidizing metal ions3.39E-02
98GO:0008237: metallopeptidase activity3.39E-02
99GO:0016597: amino acid binding3.54E-02
100GO:0015250: water channel activity3.68E-02
101GO:0102483: scopolin beta-glucosidase activity4.13E-02
102GO:0015238: drug transmembrane transporter activity4.60E-02
103GO:0004222: metalloendopeptidase activity4.76E-02
104GO:0003824: catalytic activity4.85E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009507: chloroplast1.65E-36
4GO:0009535: chloroplast thylakoid membrane1.11E-28
5GO:0009534: chloroplast thylakoid8.23E-22
6GO:0009570: chloroplast stroma2.07E-17
7GO:0009579: thylakoid2.53E-15
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.03E-11
9GO:0031977: thylakoid lumen2.00E-11
10GO:0009543: chloroplast thylakoid lumen7.17E-11
11GO:0009941: chloroplast envelope9.71E-10
12GO:0031969: chloroplast membrane1.95E-05
13GO:0030095: chloroplast photosystem II5.88E-05
14GO:0010287: plastoglobule1.08E-04
15GO:0009547: plastid ribosome2.84E-04
16GO:0010007: magnesium chelatase complex1.01E-03
17GO:0030076: light-harvesting complex1.07E-03
18GO:0009654: photosystem II oxygen evolving complex1.45E-03
19GO:0042651: thylakoid membrane1.45E-03
20GO:0009517: PSII associated light-harvesting complex II1.94E-03
21GO:0009523: photosystem II3.01E-03
22GO:0019898: extrinsic component of membrane3.01E-03
23GO:0009840: chloroplastic endopeptidase Clp complex3.68E-03
24GO:0009501: amyloplast5.03E-03
25GO:0005763: mitochondrial small ribosomal subunit6.54E-03
26GO:0016459: myosin complex8.19E-03
27GO:0000311: plastid large ribosomal subunit9.96E-03
28GO:0032040: small-subunit processome9.96E-03
29GO:0009508: plastid chromosome1.09E-02
30GO:0005840: ribosome1.54E-02
31GO:0015935: small ribosomal subunit1.72E-02
32GO:0009532: plastid stroma1.72E-02
33GO:0009522: photosystem I2.57E-02
34GO:0010319: stromule3.39E-02
35GO:0009295: nucleoid3.39E-02
36GO:0005887: integral component of plasma membrane3.68E-02
37GO:0000325: plant-type vacuole4.93E-02
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Gene type



Gene DE type