co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G22910

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006983: ER overload response	0.00E+00
2	GO:0006654: phosphatidic acid biosynthetic process	0.00E+00
3	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
4	GO:0031930: mitochondria-nucleus signaling pathway	5.62E-05
5	GO:0009738: abscisic acid-activated signaling pathway	1.24E-04
6	GO:1902065: response to L-glutamate	1.42E-04
7	GO:1903648: positive regulation of chlorophyll catabolic process	1.42E-04
8	GO:0034975: protein folding in endoplasmic reticulum	1.42E-04
9	GO:0000077: DNA damage checkpoint	1.42E-04
10	GO:1990641: response to iron ion starvation	1.42E-04
11	GO:0080183: response to photooxidative stress	3.25E-04
12	GO:0040020: regulation of meiotic nuclear division	3.25E-04
13	GO:0009812: flavonoid metabolic process	3.25E-04
14	GO:0006101: citrate metabolic process	3.25E-04
15	GO:0043066: negative regulation of apoptotic process	3.25E-04
16	GO:0006065: UDP-glucuronate biosynthetic process	5.33E-04
17	GO:0006517: protein deglycosylation	5.33E-04
18	GO:0052546: cell wall pectin metabolic process	5.33E-04
19	GO:0009846: pollen germination	5.67E-04
20	GO:0071323: cellular response to chitin	7.63E-04
21	GO:0050482: arachidonic acid secretion	7.63E-04
22	GO:0055070: copper ion homeostasis	7.63E-04
23	GO:0051639: actin filament network formation	7.63E-04
24	GO:0009306: protein secretion	7.98E-04
25	GO:0051764: actin crosslink formation	1.01E-03
26	GO:0022622: root system development	1.01E-03
27	GO:0006097: glyoxylate cycle	1.28E-03
28	GO:0009229: thiamine diphosphate biosynthetic process	1.28E-03
29	GO:0009247: glycolipid biosynthetic process	1.28E-03
30	GO:0006354: DNA-templated transcription, elongation	1.57E-03
31	GO:0009228: thiamine biosynthetic process	1.57E-03
32	GO:0030307: positive regulation of cell growth	2.21E-03
33	GO:0010044: response to aluminum ion	2.21E-03
34	GO:1900057: positive regulation of leaf senescence	2.21E-03
35	GO:0019375: galactolipid biosynthetic process	2.56E-03
36	GO:0031540: regulation of anthocyanin biosynthetic process	2.56E-03
37	GO:0006102: isocitrate metabolic process	2.56E-03
38	GO:0006644: phospholipid metabolic process	2.56E-03
39	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.56E-03
40	GO:0006491: N-glycan processing	2.56E-03
41	GO:1900150: regulation of defense response to fungus	2.56E-03
42	GO:0045087: innate immune response	2.86E-03
43	GO:0006379: mRNA cleavage	3.31E-03
44	GO:0007338: single fertilization	3.31E-03
45	GO:0010332: response to gamma radiation	3.31E-03
46	GO:0009860: pollen tube growth	3.63E-03
47	GO:0008202: steroid metabolic process	3.71E-03
48	GO:0030042: actin filament depolymerization	3.71E-03
49	GO:0009086: methionine biosynthetic process	3.71E-03
50	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	3.71E-03
51	GO:0043069: negative regulation of programmed cell death	4.12E-03
52	GO:0000038: very long-chain fatty acid metabolic process	4.55E-03
53	GO:0006913: nucleocytoplasmic transport	4.55E-03
54	GO:0009089: lysine biosynthetic process via diaminopimelate	4.55E-03
55	GO:0042538: hyperosmotic salinity response	4.61E-03
56	GO:0016192: vesicle-mediated transport	4.62E-03
57	GO:0045037: protein import into chloroplast stroma	4.99E-03
58	GO:0030036: actin cytoskeleton organization	5.45E-03
59	GO:0018107: peptidyl-threonine phosphorylation	5.45E-03
60	GO:0034605: cellular response to heat	5.92E-03
61	GO:0007034: vacuolar transport	5.92E-03
62	GO:0007030: Golgi organization	6.41E-03
63	GO:0009901: anther dehiscence	6.41E-03
64	GO:0034976: response to endoplasmic reticulum stress	6.91E-03
65	GO:0009408: response to heat	7.11E-03
66	GO:0018105: peptidyl-serine phosphorylation	7.24E-03
67	GO:0051017: actin filament bundle assembly	7.42E-03
68	GO:0045333: cellular respiration	7.42E-03
69	GO:0080147: root hair cell development	7.42E-03
70	GO:0007275: multicellular organism development	8.06E-03
71	GO:0048278: vesicle docking	8.49E-03
72	GO:0009845: seed germination	9.54E-03
73	GO:0010197: polar nucleus fusion	1.20E-02
74	GO:0010150: leaf senescence	1.22E-02
75	GO:0061025: membrane fusion	1.26E-02
76	GO:0006623: protein targeting to vacuole	1.33E-02
77	GO:0006891: intra-Golgi vesicle-mediated transport	1.39E-02
78	GO:0007166: cell surface receptor signaling pathway	1.39E-02
79	GO:0006470: protein dephosphorylation	1.39E-02
80	GO:0008380: RNA splicing	1.46E-02
81	GO:0009630: gravitropism	1.46E-02
82	GO:0006351: transcription, DNA-templated	1.46E-02
83	GO:0030163: protein catabolic process	1.53E-02
84	GO:0009567: double fertilization forming a zygote and endosperm	1.60E-02
85	GO:0006464: cellular protein modification process	1.60E-02
86	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.88E-02
87	GO:0010029: regulation of seed germination	1.88E-02
88	GO:0009816: defense response to bacterium, incompatible interaction	1.88E-02
89	GO:0006906: vesicle fusion	1.96E-02
90	GO:0055085: transmembrane transport	1.99E-02
91	GO:0006457: protein folding	2.04E-02
92	GO:0048767: root hair elongation	2.26E-02
93	GO:0010119: regulation of stomatal movement	2.42E-02
94	GO:0010200: response to chitin	2.43E-02
95	GO:0006099: tricarboxylic acid cycle	2.67E-02
96	GO:0006886: intracellular protein transport	2.90E-02
97	GO:0006897: endocytosis	2.93E-02
98	GO:0006631: fatty acid metabolic process	2.93E-02
99	GO:0010114: response to red light	3.10E-02
100	GO:0000209: protein polyubiquitination	3.19E-02
101	GO:0031347: regulation of defense response	3.55E-02
102	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.55E-02
103	GO:0008152: metabolic process	3.81E-02
104	GO:0010224: response to UV-B	3.93E-02
105	GO:0006857: oligopeptide transport	4.02E-02
106	GO:0006096: glycolytic process	4.32E-02

Rank	GO Term	Adjusted P value
1	GO:0034338: short-chain carboxylesterase activity	0.00E+00
2	GO:0050334: thiaminase activity	0.00E+00
3	GO:0004623: phospholipase A2 activity	2.66E-05
4	GO:0047150: betaine-homocysteine S-methyltransferase activity	1.42E-04
5	GO:0046481: digalactosyldiacylglycerol synthase activity	1.42E-04
6	GO:0010285: L,L-diaminopimelate aminotransferase activity	1.42E-04
7	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	1.42E-04
8	GO:0052640: salicylic acid glucosyltransferase (glucoside-forming) activity	3.25E-04
9	GO:0003994: aconitate hydratase activity	3.25E-04
10	GO:0032934: sterol binding	3.25E-04
11	GO:0003979: UDP-glucose 6-dehydrogenase activity	5.33E-04
12	GO:0000975: regulatory region DNA binding	5.33E-04
13	GO:0035250: UDP-galactosyltransferase activity	7.63E-04
14	GO:0009916: alternative oxidase activity	1.01E-03
15	GO:0046527: glucosyltransferase activity	1.01E-03
16	GO:0008641: small protein activating enzyme activity	1.28E-03
17	GO:0004656: procollagen-proline 4-dioxygenase activity	1.88E-03
18	GO:0005509: calcium ion binding	2.14E-03
19	GO:0008194: UDP-glycosyltransferase activity	2.19E-03
20	GO:0004869: cysteine-type endopeptidase inhibitor activity	2.56E-03
21	GO:0008142: oxysterol binding	2.93E-03
22	GO:0030955: potassium ion binding	3.71E-03
23	GO:0004743: pyruvate kinase activity	3.71E-03
24	GO:0030234: enzyme regulator activity	4.12E-03
25	GO:0015198: oligopeptide transporter activity	4.99E-03
26	GO:0008061: chitin binding	6.41E-03
27	GO:0080043: quercetin 3-O-glucosyltransferase activity	6.43E-03
28	GO:0080044: quercetin 7-O-glucosyltransferase activity	6.43E-03
29	GO:0015035: protein disulfide oxidoreductase activity	7.24E-03
30	GO:0031418: L-ascorbic acid binding	7.42E-03
31	GO:0004707: MAP kinase activity	8.49E-03
32	GO:0003756: protein disulfide isomerase activity	1.02E-02
33	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.14E-02
34	GO:0016301: kinase activity	1.19E-02
35	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.35E-02
36	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.53E-02
37	GO:0051015: actin filament binding	1.53E-02
38	GO:0008483: transaminase activity	1.67E-02
39	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.67E-02
40	GO:0046872: metal ion binding	1.81E-02
41	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.96E-02
42	GO:0004683: calmodulin-dependent protein kinase activity	2.03E-02
43	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.03E-02
44	GO:0004806: triglyceride lipase activity	2.03E-02
45	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.19E-02
46	GO:0004222: metalloendopeptidase activity	2.34E-02
47	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.59E-02
48	GO:0000149: SNARE binding	2.76E-02
49	GO:0051539: 4 iron, 4 sulfur cluster binding	2.84E-02
50	GO:0003676: nucleic acid binding	2.85E-02
51	GO:0004722: protein serine/threonine phosphatase activity	3.08E-02
52	GO:0005484: SNAP receptor activity	3.10E-02
53	GO:0051537: 2 iron, 2 sulfur cluster binding	3.28E-02
54	GO:0051287: NAD binding	3.55E-02
55	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.83E-02
56	GO:0043565: sequence-specific DNA binding	4.07E-02
57	GO:0016874: ligase activity	4.72E-02
58	GO:0022857: transmembrane transporter activity	4.72E-02
59	GO:0003779: actin binding	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0005783: endoplasmic reticulum	1.29E-04
2	GO:0032432: actin filament bundle	7.63E-04
3	GO:0005789: endoplasmic reticulum membrane	1.41E-03
4	GO:0005788: endoplasmic reticulum lumen	1.84E-03
5	GO:0016272: prefoldin complex	1.88E-03
6	GO:0031902: late endosome membrane	3.40E-03
7	GO:0030665: clathrin-coated vesicle membrane	3.71E-03
8	GO:0017119: Golgi transport complex	4.12E-03
9	GO:0005884: actin filament	4.55E-03
10	GO:0005795: Golgi stack	6.41E-03
11	GO:0005622: intracellular	7.93E-03
12	GO:0070469: respiratory chain	7.95E-03
13	GO:0015629: actin cytoskeleton	9.62E-03
14	GO:0005737: cytoplasm	1.12E-02
15	GO:0016592: mediator complex	1.46E-02
16	GO:0000139: Golgi membrane	1.53E-02
17	GO:0016021: integral component of membrane	1.56E-02
18	GO:0005829: cytosol	1.70E-02
19	GO:0005774: vacuolar membrane	2.13E-02
20	GO:0009707: chloroplast outer membrane	2.19E-02
21	GO:0000325: plant-type vacuole	2.42E-02
22	GO:0031201: SNARE complex	2.93E-02
23	GO:0005743: mitochondrial inner membrane	3.22E-02
24	GO:0043231: intracellular membrane-bounded organelle	3.81E-02
25	GO:0005635: nuclear envelope	4.02E-02
26	GO:0005681: spliceosomal complex	4.32E-02
27	GO:0016607: nuclear speck	4.42E-02
28	GO:0010008: endosome membrane	4.42E-02
29	GO:0016020: membrane	4.87E-02
30	GO:0009706: chloroplast inner membrane	4.92E-02