co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G22790

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000819: sister chromatid segregation	0.00E+00
2	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
3	GO:0045184: establishment of protein localization	0.00E+00
4	GO:0044774: mitotic DNA integrity checkpoint	0.00E+00
5	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
6	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
7	GO:0010588: cotyledon vascular tissue pattern formation	7.95E-05
8	GO:0048497: maintenance of floral organ identity	1.22E-04
9	GO:0015904: tetracycline transport	3.55E-04
10	GO:0048016: inositol phosphate-mediated signaling	3.55E-04
11	GO:0042659: regulation of cell fate specification	3.55E-04
12	GO:0006438: valyl-tRNA aminoacylation	3.55E-04
13	GO:0090558: plant epidermis development	3.55E-04
14	GO:0046520: sphingoid biosynthetic process	3.55E-04
15	GO:0070509: calcium ion import	3.55E-04
16	GO:0035987: endodermal cell differentiation	3.55E-04
17	GO:0051641: cellular localization	3.55E-04
18	GO:0007018: microtubule-based movement	4.47E-04
19	GO:0010583: response to cyclopentenone	5.82E-04
20	GO:0043039: tRNA aminoacylation	7.72E-04
21	GO:1901529: positive regulation of anion channel activity	7.72E-04
22	GO:0018026: peptidyl-lysine monomethylation	7.72E-04
23	GO:0071497: cellular response to freezing	7.72E-04
24	GO:0080009: mRNA methylation	7.72E-04
25	GO:0009786: regulation of asymmetric cell division	7.72E-04
26	GO:0048829: root cap development	7.85E-04
27	GO:0000910: cytokinesis	7.94E-04
28	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	1.25E-03
29	GO:0090708: specification of plant organ axis polarity	1.25E-03
30	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	1.25E-03
31	GO:0030261: chromosome condensation	1.25E-03
32	GO:0006833: water transport	1.64E-03
33	GO:0007276: gamete generation	1.80E-03
34	GO:0016556: mRNA modification	1.80E-03
35	GO:0009647: skotomorphogenesis	1.80E-03
36	GO:0006424: glutamyl-tRNA aminoacylation	1.80E-03
37	GO:0009558: embryo sac cellularization	1.80E-03
38	GO:0010321: regulation of vegetative phase change	1.80E-03
39	GO:0010371: regulation of gibberellin biosynthetic process	1.80E-03
40	GO:0009640: photomorphogenesis	2.21E-03
41	GO:0000914: phragmoplast assembly	2.42E-03
42	GO:0007020: microtubule nucleation	2.42E-03
43	GO:0030104: water homeostasis	2.42E-03
44	GO:0031122: cytoplasmic microtubule organization	2.42E-03
45	GO:0006808: regulation of nitrogen utilization	2.42E-03
46	GO:1901141: regulation of lignin biosynthetic process	2.42E-03
47	GO:0042127: regulation of cell proliferation	2.86E-03
48	GO:0032957: inositol trisphosphate metabolic process	3.09E-03
49	GO:0046785: microtubule polymerization	3.09E-03
50	GO:0007094: mitotic spindle assembly checkpoint	3.09E-03
51	GO:0009741: response to brassinosteroid	3.61E-03
52	GO:0010305: leaf vascular tissue pattern formation	3.61E-03
53	GO:0016554: cytidine to uridine editing	3.82E-03
54	GO:0009913: epidermal cell differentiation	3.82E-03
55	GO:0046855: inositol phosphate dephosphorylation	3.82E-03
56	GO:1902456: regulation of stomatal opening	3.82E-03
57	GO:0042793: transcription from plastid promoter	3.82E-03
58	GO:2000067: regulation of root morphogenesis	4.60E-03
59	GO:0010067: procambium histogenesis	4.60E-03
60	GO:2000033: regulation of seed dormancy process	4.60E-03
61	GO:0030488: tRNA methylation	4.60E-03
62	GO:0048528: post-embryonic root development	5.44E-03
63	GO:1900056: negative regulation of leaf senescence	5.44E-03
64	GO:0000082: G1/S transition of mitotic cell cycle	5.44E-03
65	GO:0010444: guard mother cell differentiation	5.44E-03
66	GO:0010103: stomatal complex morphogenesis	5.44E-03
67	GO:0000712: resolution of meiotic recombination intermediates	5.44E-03
68	GO:0051726: regulation of cell cycle	5.46E-03
69	GO:0046620: regulation of organ growth	6.32E-03
70	GO:0001522: pseudouridine synthesis	6.32E-03
71	GO:0010492: maintenance of shoot apical meristem identity	6.32E-03
72	GO:0055075: potassium ion homeostasis	6.32E-03
73	GO:0000105: histidine biosynthetic process	6.32E-03
74	GO:0010332: response to gamma radiation	8.22E-03
75	GO:0009056: catabolic process	8.22E-03
76	GO:0009835: fruit ripening	8.22E-03
77	GO:0009790: embryo development	8.23E-03
78	GO:0051301: cell division	8.57E-03
79	GO:0000160: phosphorelay signal transduction system	8.84E-03
80	GO:0010311: lateral root formation	8.84E-03
81	GO:0009098: leucine biosynthetic process	9.24E-03
82	GO:1900865: chloroplast RNA modification	9.24E-03
83	GO:2000280: regulation of root development	9.24E-03
84	GO:0007346: regulation of mitotic cell cycle	9.24E-03
85	GO:0016042: lipid catabolic process	9.96E-03
86	GO:0006865: amino acid transport	1.02E-02
87	GO:0006949: syncytium formation	1.03E-02
88	GO:0006259: DNA metabolic process	1.03E-02
89	GO:0031627: telomeric loop formation	1.03E-02
90	GO:0010162: seed dormancy process	1.03E-02
91	GO:0009641: shade avoidance	1.03E-02
92	GO:0046856: phosphatidylinositol dephosphorylation	1.14E-02
93	GO:0006265: DNA topological change	1.14E-02
94	GO:0048229: gametophyte development	1.14E-02
95	GO:0006312: mitotic recombination	1.26E-02
96	GO:0012501: programmed cell death	1.26E-02
97	GO:0000266: mitochondrial fission	1.26E-02
98	GO:0006351: transcription, DNA-templated	1.34E-02
99	GO:2000012: regulation of auxin polar transport	1.38E-02
100	GO:0010102: lateral root morphogenesis	1.38E-02
101	GO:0009691: cytokinin biosynthetic process	1.38E-02
102	GO:0030048: actin filament-based movement	1.38E-02
103	GO:0048768: root hair cell tip growth	1.50E-02
104	GO:0010020: chloroplast fission	1.50E-02
105	GO:0007034: vacuolar transport	1.50E-02
106	GO:0009887: animal organ morphogenesis	1.50E-02
107	GO:0070588: calcium ion transmembrane transport	1.62E-02
108	GO:0009793: embryo development ending in seed dormancy	1.68E-02
109	GO:0000162: tryptophan biosynthetic process	1.76E-02
110	GO:0006636: unsaturated fatty acid biosynthetic process	1.76E-02
111	GO:0006071: glycerol metabolic process	1.76E-02
112	GO:0009736: cytokinin-activated signaling pathway	1.87E-02
113	GO:0080147: root hair cell development	1.89E-02
114	GO:0051302: regulation of cell division	2.03E-02
115	GO:0019953: sexual reproduction	2.03E-02
116	GO:0006418: tRNA aminoacylation for protein translation	2.03E-02
117	GO:0007017: microtubule-based process	2.03E-02
118	GO:0010431: seed maturation	2.17E-02
119	GO:0003333: amino acid transmembrane transport	2.17E-02
120	GO:0048367: shoot system development	2.28E-02
121	GO:0007005: mitochondrion organization	2.31E-02
122	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.43E-02
123	GO:0009693: ethylene biosynthetic process	2.46E-02
124	GO:0010091: trichome branching	2.61E-02
125	GO:0009624: response to nematode	2.66E-02
126	GO:0009742: brassinosteroid mediated signaling pathway	2.82E-02
127	GO:0010118: stomatal movement	2.92E-02
128	GO:0080022: primary root development	2.92E-02
129	GO:0008033: tRNA processing	2.92E-02
130	GO:0034220: ion transmembrane transport	2.92E-02
131	GO:0010051: xylem and phloem pattern formation	2.92E-02
132	GO:0010087: phloem or xylem histogenesis	2.92E-02
133	GO:0006508: proteolysis	3.01E-02
134	GO:0010182: sugar mediated signaling pathway	3.08E-02
135	GO:0007059: chromosome segregation	3.25E-02
136	GO:0048825: cotyledon development	3.41E-02
137	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.58E-02
138	GO:0071554: cell wall organization or biogenesis	3.58E-02
139	GO:0032502: developmental process	3.75E-02
140	GO:0030163: protein catabolic process	3.93E-02
141	GO:0071281: cellular response to iron ion	3.93E-02
142	GO:1901657: glycosyl compound metabolic process	3.93E-02
143	GO:0048364: root development	3.99E-02
144	GO:0019760: glucosinolate metabolic process	4.11E-02
145	GO:0009828: plant-type cell wall loosening	4.11E-02
146	GO:0040008: regulation of growth	4.37E-02
147	GO:0051607: defense response to virus	4.47E-02
148	GO:0010027: thylakoid membrane organization	4.65E-02
149	GO:0009451: RNA modification	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
3	GO:0047661: amino-acid racemase activity	0.00E+00
4	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
5	GO:0004176: ATP-dependent peptidase activity	2.07E-04
6	GO:0000170: sphingosine hydroxylase activity	3.55E-04
7	GO:0046030: inositol trisphosphate phosphatase activity	3.55E-04
8	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	3.55E-04
9	GO:0052381: tRNA dimethylallyltransferase activity	3.55E-04
10	GO:0004818: glutamate-tRNA ligase activity	3.55E-04
11	GO:0009374: biotin binding	3.55E-04
12	GO:0004832: valine-tRNA ligase activity	3.55E-04
13	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	4.06E-04
14	GO:0003777: microtubule motor activity	6.34E-04
15	GO:0008237: metallopeptidase activity	7.37E-04
16	GO:0010296: prenylcysteine methylesterase activity	7.72E-04
17	GO:0042284: sphingolipid delta-4 desaturase activity	7.72E-04
18	GO:0008493: tetracycline transporter activity	7.72E-04
19	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	7.72E-04
20	GO:0016630: protochlorophyllide reductase activity	7.72E-04
21	GO:0003852: 2-isopropylmalate synthase activity	7.72E-04
22	GO:0017150: tRNA dihydrouridine synthase activity	1.25E-03
23	GO:0052689: carboxylic ester hydrolase activity	1.62E-03
24	GO:0001872: (1->3)-beta-D-glucan binding	1.80E-03
25	GO:0003916: DNA topoisomerase activity	1.80E-03
26	GO:0003723: RNA binding	2.16E-03
27	GO:0008017: microtubule binding	2.28E-03
28	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.42E-03
29	GO:0019199: transmembrane receptor protein kinase activity	2.42E-03
30	GO:0016279: protein-lysine N-methyltransferase activity	2.42E-03
31	GO:0003989: acetyl-CoA carboxylase activity	3.09E-03
32	GO:0004527: exonuclease activity	3.61E-03
33	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	3.82E-03
34	GO:0016832: aldehyde-lyase activity	4.60E-03
35	GO:0000156: phosphorelay response regulator activity	5.07E-03
36	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	6.32E-03
37	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	7.25E-03
38	GO:0008173: RNA methyltransferase activity	7.25E-03
39	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	7.25E-03
40	GO:0005515: protein binding	7.32E-03
41	GO:0008889: glycerophosphodiester phosphodiesterase activity	8.22E-03
42	GO:0004222: metalloendopeptidase activity	9.29E-03
43	GO:0003924: GTPase activity	1.04E-02
44	GO:0003697: single-stranded DNA binding	1.07E-02
45	GO:0003691: double-stranded telomeric DNA binding	1.14E-02
46	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.14E-02
47	GO:0004519: endonuclease activity	1.18E-02
48	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.26E-02
49	GO:0000049: tRNA binding	1.26E-02
50	GO:0009982: pseudouridine synthase activity	1.38E-02
51	GO:0003725: double-stranded RNA binding	1.38E-02
52	GO:0005262: calcium channel activity	1.38E-02
53	GO:0003774: motor activity	1.50E-02
54	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.50E-02
55	GO:0005198: structural molecule activity	1.55E-02
56	GO:0003712: transcription cofactor activity	1.62E-02
57	GO:0004190: aspartic-type endopeptidase activity	1.62E-02
58	GO:0008289: lipid binding	1.71E-02
59	GO:0005525: GTP binding	1.75E-02
60	GO:0016788: hydrolase activity, acting on ester bonds	1.82E-02
61	GO:0016298: lipase activity	1.93E-02
62	GO:0016887: ATPase activity	2.01E-02
63	GO:0015171: amino acid transmembrane transporter activity	2.07E-02
64	GO:0004707: MAP kinase activity	2.17E-02
65	GO:0008094: DNA-dependent ATPase activity	2.17E-02
66	GO:0008408: 3'-5' exonuclease activity	2.17E-02
67	GO:0005524: ATP binding	2.42E-02
68	GO:0004650: polygalacturonase activity	2.43E-02
69	GO:0030570: pectate lyase activity	2.46E-02
70	GO:0003779: actin binding	2.58E-02
71	GO:0003727: single-stranded RNA binding	2.61E-02
72	GO:0004812: aminoacyl-tRNA ligase activity	2.77E-02
73	GO:0004871: signal transducer activity	3.09E-02
74	GO:0042803: protein homodimerization activity	3.09E-02
75	GO:0016853: isomerase activity	3.25E-02
76	GO:0004674: protein serine/threonine kinase activity	3.58E-02
77	GO:0016829: lyase activity	3.60E-02
78	GO:0004518: nuclease activity	3.75E-02
79	GO:0016791: phosphatase activity	4.11E-02
80	GO:0016759: cellulose synthase activity	4.11E-02
81	GO:0009055: electron carrier activity	4.12E-02
82	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.27E-02
83	GO:0005200: structural constituent of cytoskeleton	4.29E-02
84	GO:0016413: O-acetyltransferase activity	4.47E-02
85	GO:0015250: water channel activity	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0005871: kinesin complex	3.32E-04
3	GO:0000796: condensin complex	3.55E-04
4	GO:0000427: plastid-encoded plastid RNA polymerase complex	7.72E-04
5	GO:0030139: endocytic vesicle	1.25E-03
6	GO:0009317: acetyl-CoA carboxylase complex	1.25E-03
7	GO:0032585: multivesicular body membrane	1.80E-03
8	GO:0030286: dynein complex	2.42E-03
9	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.42E-03
10	GO:0005828: kinetochore microtubule	2.42E-03
11	GO:0000930: gamma-tubulin complex	2.42E-03
12	GO:0000776: kinetochore	3.09E-03
13	GO:0046658: anchored component of plasma membrane	3.26E-03
14	GO:0000793: condensed chromosome	3.82E-03
15	GO:0010369: chromocenter	4.60E-03
16	GO:0000777: condensed chromosome kinetochore	4.60E-03
17	GO:0000815: ESCRT III complex	4.60E-03
18	GO:0009986: cell surface	5.44E-03
19	GO:0000794: condensed nuclear chromosome	5.44E-03
20	GO:0005874: microtubule	5.46E-03
21	GO:0048226: Casparian strip	6.32E-03
22	GO:0000783: nuclear telomere cap complex	7.25E-03
23	GO:0005876: spindle microtubule	9.24E-03
24	GO:0009534: chloroplast thylakoid	1.03E-02
25	GO:0000418: DNA-directed RNA polymerase IV complex	1.03E-02
26	GO:0016459: myosin complex	1.03E-02
27	GO:0090404: pollen tube tip	1.14E-02
28	GO:0005938: cell cortex	1.38E-02
29	GO:0009508: plastid chromosome	1.38E-02
30	GO:0030095: chloroplast photosystem II	1.50E-02
31	GO:0031225: anchored component of membrane	1.59E-02
32	GO:0009654: photosystem II oxygen evolving complex	2.03E-02
33	GO:0015629: actin cytoskeleton	2.46E-02
34	GO:0019898: extrinsic component of membrane	3.41E-02
35	GO:0009295: nucleoid	4.29E-02