co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G22210

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905177: tracheary element differentiation	0.00E+00
2	GO:0008298: intracellular mRNA localization	0.00E+00
3	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
4	GO:0071474: cellular hyperosmotic response	0.00E+00
5	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
6	GO:0070979: protein K11-linked ubiquitination	0.00E+00
7	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
8	GO:0030155: regulation of cell adhesion	0.00E+00
9	GO:0042821: pyridoxal biosynthetic process	0.00E+00
10	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
11	GO:0090279: regulation of calcium ion import	0.00E+00
12	GO:0042820: vitamin B6 catabolic process	0.00E+00
13	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
14	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.41E-06
15	GO:0071482: cellular response to light stimulus	5.74E-06
16	GO:0015979: photosynthesis	1.06E-05
17	GO:2001141: regulation of RNA biosynthetic process	2.00E-05
18	GO:0045038: protein import into chloroplast thylakoid membrane	5.85E-05
19	GO:0000481: maturation of 5S rRNA	2.27E-04
20	GO:0006659: phosphatidylserine biosynthetic process	2.27E-04
21	GO:0042371: vitamin K biosynthetic process	2.27E-04
22	GO:0071461: cellular response to redox state	2.27E-04
23	GO:0051247: positive regulation of protein metabolic process	2.27E-04
24	GO:0034337: RNA folding	2.27E-04
25	GO:2000905: negative regulation of starch metabolic process	2.27E-04
26	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	2.27E-04
27	GO:0015969: guanosine tetraphosphate metabolic process	2.27E-04
28	GO:0009443: pyridoxal 5'-phosphate salvage	2.27E-04
29	GO:0051775: response to redox state	2.27E-04
30	GO:0010027: thylakoid membrane organization	3.74E-04
31	GO:0019684: photosynthesis, light reaction	4.83E-04
32	GO:0043085: positive regulation of catalytic activity	4.83E-04
33	GO:0006352: DNA-templated transcription, initiation	4.83E-04
34	GO:0051262: protein tetramerization	5.05E-04
35	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.05E-04
36	GO:0080005: photosystem stoichiometry adjustment	5.05E-04
37	GO:0018298: protein-chromophore linkage	5.28E-04
38	GO:0009767: photosynthetic electron transport chain	6.27E-04
39	GO:0006760: folic acid-containing compound metabolic process	8.21E-04
40	GO:0005977: glycogen metabolic process	8.21E-04
41	GO:0048281: inflorescence morphogenesis	8.21E-04
42	GO:0048586: regulation of long-day photoperiodism, flowering	8.21E-04
43	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	8.21E-04
44	GO:0006954: inflammatory response	8.21E-04
45	GO:0031145: anaphase-promoting complex-dependent catabolic process	8.21E-04
46	GO:0010623: programmed cell death involved in cell development	8.21E-04
47	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.17E-03
48	GO:0030071: regulation of mitotic metaphase/anaphase transition	1.17E-03
49	GO:0006107: oxaloacetate metabolic process	1.17E-03
50	GO:0010148: transpiration	1.17E-03
51	GO:0009226: nucleotide-sugar biosynthetic process	1.17E-03
52	GO:0006730: one-carbon metabolic process	1.27E-03
53	GO:0010021: amylopectin biosynthetic process	1.56E-03
54	GO:0009765: photosynthesis, light harvesting	1.56E-03
55	GO:2000306: positive regulation of photomorphogenesis	1.56E-03
56	GO:0006109: regulation of carbohydrate metabolic process	1.56E-03
57	GO:0010508: positive regulation of autophagy	1.56E-03
58	GO:0031122: cytoplasmic microtubule organization	1.56E-03
59	GO:0006546: glycine catabolic process	1.56E-03
60	GO:0046656: folic acid biosynthetic process	1.56E-03
61	GO:0006021: inositol biosynthetic process	1.56E-03
62	GO:0006734: NADH metabolic process	1.56E-03
63	GO:0009107: lipoate biosynthetic process	1.99E-03
64	GO:0016123: xanthophyll biosynthetic process	1.99E-03
65	GO:0032876: negative regulation of DNA endoreduplication	1.99E-03
66	GO:0080110: sporopollenin biosynthetic process	1.99E-03
67	GO:0008654: phospholipid biosynthetic process	2.18E-03
68	GO:0050665: hydrogen peroxide biosynthetic process	2.45E-03
69	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.45E-03
70	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.45E-03
71	GO:0006555: methionine metabolic process	2.45E-03
72	GO:0032973: amino acid export	2.45E-03
73	GO:0006655: phosphatidylglycerol biosynthetic process	2.45E-03
74	GO:0010190: cytochrome b6f complex assembly	2.45E-03
75	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.45E-03
76	GO:0032502: developmental process	2.49E-03
77	GO:0010189: vitamin E biosynthetic process	2.94E-03
78	GO:0009854: oxidative photosynthetic carbon pathway	2.94E-03
79	GO:0010019: chloroplast-nucleus signaling pathway	2.94E-03
80	GO:0046654: tetrahydrofolate biosynthetic process	2.94E-03
81	GO:0010103: stomatal complex morphogenesis	3.47E-03
82	GO:0009395: phospholipid catabolic process	3.47E-03
83	GO:0043090: amino acid import	3.47E-03
84	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.47E-03
85	GO:0070370: cellular heat acclimation	3.47E-03
86	GO:0009645: response to low light intensity stimulus	3.47E-03
87	GO:0006400: tRNA modification	3.47E-03
88	GO:0007155: cell adhesion	4.02E-03
89	GO:0048564: photosystem I assembly	4.02E-03
90	GO:0042255: ribosome assembly	4.02E-03
91	GO:0006353: DNA-templated transcription, termination	4.02E-03
92	GO:0009690: cytokinin metabolic process	4.02E-03
93	GO:0006605: protein targeting	4.02E-03
94	GO:0032875: regulation of DNA endoreduplication	4.02E-03
95	GO:0032508: DNA duplex unwinding	4.02E-03
96	GO:0032544: plastid translation	4.60E-03
97	GO:0017004: cytochrome complex assembly	4.60E-03
98	GO:0001558: regulation of cell growth	4.60E-03
99	GO:0010204: defense response signaling pathway, resistance gene-independent	4.60E-03
100	GO:0055114: oxidation-reduction process	4.68E-03
101	GO:0000373: Group II intron splicing	5.22E-03
102	GO:0010206: photosystem II repair	5.22E-03
103	GO:0080144: amino acid homeostasis	5.22E-03
104	GO:0035999: tetrahydrofolate interconversion	5.85E-03
105	GO:0009086: methionine biosynthetic process	5.85E-03
106	GO:0019538: protein metabolic process	6.51E-03
107	GO:0009089: lysine biosynthetic process via diaminopimelate	7.20E-03
108	GO:0009644: response to high light intensity	7.73E-03
109	GO:0016024: CDP-diacylglycerol biosynthetic process	7.92E-03
110	GO:0006108: malate metabolic process	8.66E-03
111	GO:0010207: photosystem II assembly	9.42E-03
112	GO:0006096: glycolytic process	1.14E-02
113	GO:0009944: polarity specification of adaxial/abaxial axis	1.19E-02
114	GO:0051302: regulation of cell division	1.27E-02
115	GO:0008299: isoprenoid biosynthetic process	1.27E-02
116	GO:0009768: photosynthesis, light harvesting in photosystem I	1.27E-02
117	GO:0010431: seed maturation	1.36E-02
118	GO:0001944: vasculature development	1.54E-02
119	GO:0009306: protein secretion	1.64E-02
120	GO:0010089: xylem development	1.64E-02
121	GO:0010584: pollen exine formation	1.64E-02
122	GO:0019722: calcium-mediated signaling	1.64E-02
123	GO:0009561: megagametogenesis	1.64E-02
124	GO:0006629: lipid metabolic process	1.66E-02
125	GO:0016117: carotenoid biosynthetic process	1.73E-02
126	GO:0008033: tRNA processing	1.83E-02
127	GO:0010087: phloem or xylem histogenesis	1.83E-02
128	GO:0048868: pollen tube development	1.93E-02
129	GO:0045489: pectin biosynthetic process	1.93E-02
130	GO:0006662: glycerol ether metabolic process	1.93E-02
131	GO:0019252: starch biosynthetic process	2.14E-02
132	GO:0009791: post-embryonic development	2.14E-02
133	GO:0007267: cell-cell signaling	2.68E-02
134	GO:0008380: RNA splicing	2.85E-02
135	GO:0016126: sterol biosynthetic process	2.91E-02
136	GO:0010029: regulation of seed germination	3.03E-02
137	GO:0015995: chlorophyll biosynthetic process	3.27E-02
138	GO:0006099: tricarboxylic acid cycle	4.30E-02
139	GO:0034599: cellular response to oxidative stress	4.30E-02
140	GO:0080167: response to karrikin	4.56E-02
141	GO:0006839: mitochondrial transport	4.57E-02
142	GO:0030001: metal ion transport	4.57E-02
143	GO:0055085: transmembrane transport	4.57E-02
144	GO:0006810: transport	4.60E-02
145	GO:0005975: carbohydrate metabolic process	4.82E-02
146	GO:0051707: response to other organism	4.98E-02
147	GO:0008283: cell proliferation	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
4	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
5	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
6	GO:0050613: delta14-sterol reductase activity	0.00E+00
7	GO:0010276: phytol kinase activity	0.00E+00
8	GO:0019899: enzyme binding	2.58E-06
9	GO:0070402: NADPH binding	8.79E-06
10	GO:0001053: plastid sigma factor activity	3.66E-05
11	GO:0016987: sigma factor activity	3.66E-05
12	GO:0043495: protein anchor	3.66E-05
13	GO:0008746: NAD(P)+ transhydrogenase activity	2.27E-04
14	GO:0004328: formamidase activity	2.27E-04
15	GO:0046906: tetrapyrrole binding	2.27E-04
16	GO:0005227: calcium activated cation channel activity	2.27E-04
17	GO:0009496: plastoquinol--plastocyanin reductase activity	2.27E-04
18	GO:0008568: microtubule-severing ATPase activity	2.27E-04
19	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	2.27E-04
20	GO:0016491: oxidoreductase activity	3.40E-04
21	GO:0016168: chlorophyll binding	4.03E-04
22	GO:0010291: carotene beta-ring hydroxylase activity	5.05E-04
23	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	5.05E-04
24	GO:0004047: aminomethyltransferase activity	5.05E-04
25	GO:0102083: 7,8-dihydromonapterin aldolase activity	5.05E-04
26	GO:0004512: inositol-3-phosphate synthase activity	5.05E-04
27	GO:0048531: beta-1,3-galactosyltransferase activity	5.05E-04
28	GO:0019156: isoamylase activity	5.05E-04
29	GO:0004150: dihydroneopterin aldolase activity	5.05E-04
30	GO:0004802: transketolase activity	5.05E-04
31	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.05E-04
32	GO:0008728: GTP diphosphokinase activity	5.05E-04
33	GO:0016992: lipoate synthase activity	8.21E-04
34	GO:0005528: FK506 binding	9.67E-04
35	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.17E-03
36	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.17E-03
37	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.17E-03
38	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.17E-03
39	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.17E-03
40	GO:0022891: substrate-specific transmembrane transporter activity	1.38E-03
41	GO:0008891: glycolate oxidase activity	1.56E-03
42	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.56E-03
43	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.56E-03
44	GO:0004045: aminoacyl-tRNA hydrolase activity	1.56E-03
45	GO:0080032: methyl jasmonate esterase activity	1.56E-03
46	GO:0019199: transmembrane receptor protein kinase activity	1.56E-03
47	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.56E-03
48	GO:0042277: peptide binding	1.56E-03
49	GO:0008374: O-acyltransferase activity	1.99E-03
50	GO:0016615: malate dehydrogenase activity	2.45E-03
51	GO:0008200: ion channel inhibitor activity	2.45E-03
52	GO:0004605: phosphatidate cytidylyltransferase activity	2.45E-03
53	GO:0080030: methyl indole-3-acetate esterase activity	2.45E-03
54	GO:0004556: alpha-amylase activity	2.45E-03
55	GO:0004462: lactoylglutathione lyase activity	2.45E-03
56	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.94E-03
57	GO:0030060: L-malate dehydrogenase activity	2.94E-03
58	GO:0005261: cation channel activity	2.94E-03
59	GO:0008312: 7S RNA binding	4.02E-03
60	GO:0004033: aldo-keto reductase (NADP) activity	4.02E-03
61	GO:0030955: potassium ion binding	5.85E-03
62	GO:0004743: pyruvate kinase activity	5.85E-03
63	GO:0042802: identical protein binding	6.00E-03
64	GO:0008047: enzyme activator activity	6.51E-03
65	GO:0005509: calcium ion binding	6.96E-03
66	GO:0008378: galactosyltransferase activity	7.92E-03
67	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.34E-03
68	GO:0031072: heat shock protein binding	8.66E-03
69	GO:0008081: phosphoric diester hydrolase activity	8.66E-03
70	GO:0003824: catalytic activity	9.41E-03
71	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.42E-03
72	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	9.64E-03
73	GO:0003690: double-stranded DNA binding	9.98E-03
74	GO:0031409: pigment binding	1.10E-02
75	GO:0004857: enzyme inhibitor activity	1.19E-02
76	GO:0016746: transferase activity, transferring acyl groups	1.42E-02
77	GO:0030570: pectate lyase activity	1.54E-02
78	GO:0003727: single-stranded RNA binding	1.64E-02
79	GO:0047134: protein-disulfide reductase activity	1.73E-02
80	GO:0016829: lyase activity	1.87E-02
81	GO:0008080: N-acetyltransferase activity	1.93E-02
82	GO:0004791: thioredoxin-disulfide reductase activity	2.03E-02
83	GO:0016853: isomerase activity	2.03E-02
84	GO:0010181: FMN binding	2.03E-02
85	GO:0050662: coenzyme binding	2.03E-02
86	GO:0048038: quinone binding	2.24E-02
87	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.46E-02
88	GO:0008483: transaminase activity	2.68E-02
89	GO:0004721: phosphoprotein phosphatase activity	3.27E-02
90	GO:0008236: serine-type peptidase activity	3.40E-02
91	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.52E-02
92	GO:0015238: drug transmembrane transporter activity	3.65E-02
93	GO:0016788: hydrolase activity, acting on ester bonds	3.75E-02
94	GO:0030145: manganese ion binding	3.90E-02
95	GO:0003993: acid phosphatase activity	4.30E-02
96	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.43E-02
97	GO:0004185: serine-type carboxypeptidase activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	2.91E-28
3	GO:0009535: chloroplast thylakoid membrane	6.21E-15
4	GO:0009570: chloroplast stroma	6.20E-09
5	GO:0009543: chloroplast thylakoid lumen	1.09E-08
6	GO:0009654: photosystem II oxygen evolving complex	3.58E-08
7	GO:0009579: thylakoid	4.40E-07
8	GO:0080085: signal recognition particle, chloroplast targeting	2.41E-06
9	GO:0009941: chloroplast envelope	5.43E-06
10	GO:0031977: thylakoid lumen	6.00E-06
11	GO:0019898: extrinsic component of membrane	1.06E-05
12	GO:0042651: thylakoid membrane	7.03E-05
13	GO:0009344: nitrite reductase complex [NAD(P)H]	2.27E-04
14	GO:0009782: photosystem I antenna complex	2.27E-04
15	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.48E-04
16	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.00E-04
17	GO:0031969: chloroplast membrane	4.27E-04
18	GO:0030095: chloroplast photosystem II	7.06E-04
19	GO:0009512: cytochrome b6f complex	1.99E-03
20	GO:0009523: photosystem II	2.18E-03
21	GO:0009534: chloroplast thylakoid	3.25E-03
22	GO:0030529: intracellular ribonucleoprotein complex	3.36E-03
23	GO:0009539: photosystem II reaction center	4.60E-03
24	GO:0005680: anaphase-promoting complex	5.22E-03
25	GO:0016604: nuclear body	5.85E-03
26	GO:0032040: small-subunit processome	7.92E-03
27	GO:0030076: light-harvesting complex	1.02E-02
28	GO:0030176: integral component of endoplasmic reticulum membrane	1.02E-02
29	GO:0031225: anchored component of membrane	1.79E-02
30	GO:0009522: photosystem I	2.03E-02
31	GO:0010319: stromule	2.68E-02
32	GO:0046658: anchored component of plasma membrane	3.16E-02